LOCUS       NM_001418626            1713 bp    mRNA    linear   PLN 15-JUL-2024
DEFINITION  Oryza sativa Japonica Group homeobox protein knotted-1-like 7
            (LOC4333975), mRNA.
ACCESSION   NM_001418626 XM_015773336
VERSION     NM_001418626.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1713)
  AUTHORS   Ito,Y., Eiguchi,M. and Kurata,N.
  TITLE     Expression of novel homeobox genes in early embryogenesis in rice
  JOURNAL   Biochim Biophys Acta 1444 (3), 445-450 (1999)
   PUBMED   10095070
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AB071663.1.
            
            On Mar 22, 2023 this sequence version replaced XM_015773336.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB071663.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN37494773 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1713              AB071663.1         1-1713
FEATURES             Location/Qualifiers
     source          1..1713
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..1713
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /note="homeobox protein knotted-1-like 7"
                     /db_xref="GeneID:4333975"
     exon            1..745
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    410..412
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /note="upstream in-frame stop codon"
     CDS             461..1558
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /note="transcription factor OSH3; Homeobox protein HOS13;
                     Homeobox protein OSH3; LOC_Os03g51710; OSJNBa0013A09.3"
                     /codon_start=1
                     /product="homeobox protein knotted-1-like 7"
                     /protein_id="NP_001405555.1"
                     /db_xref="GeneID:4333975"
                     /translation="

MEELEGHRGEGRLPPPPPLLPFPKVSVQVYTVPSSSTAASAAAAGGARQAVAPATRDGGDGGGRAAGVLDDPVKARIVSHPRYHRLLAAFLDCHKVGCPAEAAEEIAAAARVREARQRAAAAASRMPPAPEDPELDQFMEDYCKLLVECKEELSRPLQEAEEFLRTVESELNSINSGPPLTALISESKAGLDSSDDDEHEDGSGMEMMEAAEDEDLGIIDPRSDDKALKRHLLRKYSGYLGGLRKELSKKRKKGKLPKEARQKLLTWWELHYRWPNPSEMEKIALAESTGLEQKQINNCFINQRKRHWKPTEEMEFAVMEAYHHQSTDAAAAFYVDVDARLVGATAAAPASAVYTARPDHGVWRA"

     misc_feature    461..520
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /note="propagated from UniProtKB/Swiss-Prot (Q948L5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    677..>757
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /note="KNOX1 domain; Region: KNOX1; pfam03790"
                     /db_xref="CDD:461051"
     misc_feature    851..982
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /note="KNOX2 domain; Region: KNOX2; pfam03791"
                     /db_xref="CDD:427506"
     misc_feature    1142..1204
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /note="ELK domain; Region: ELK; pfam03789"
                     /db_xref="CDD:427504"
     misc_feature    1262..1378
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     exon            746..877
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /inference="alignment:Splign:2.1.0"
     exon            878..1016
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /inference="alignment:Splign:2.1.0"
     exon            1017..1713
                     /gene="LOC4333975"
                     /gene_synonym="HOS13; OSH3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ataaaaacaagccattcaaaattattacaccagccattacaccagctgcggccggctgcttttatctgatttgacaatggacgtgacggccacccgacctctcttttcctactagctctcccctaccctacccctctttccttctagcagtagcctctactacagtctacacaccctctctatgcaaaacgcaatctcatctctgtgcagccactcatccgatatttccccccatttcttttcctctccactgtttccctcctcctttaattattcccccccacttcgcctagctttacaaacccccacaaatcgtcattctaaccaaaagaaatcagcaggattagccctagctaagtactcccaatagctgtgataaactgataattagccttctcttcttccttgctgagctggtcggtgtcgtgtaccaagaaaccctcatcaagcacatacgctaatggaggagcttgaaggccaccggggtgaaggccggctgcctcctcctcctccgttgctgccgtttcccaaggtctccgtgcaagtctacaccgttcctagctcgtccaccgccgcctccgccgccgctgcaggcggagctcgtcaggctgttgcaccggcgacgcgggacggcggcgacggcggcggccgcgccgccggagttcttgacgaccctgtcaaggccaggatcgtctcccaccctcgctaccaccgcctcctcgccgccttcctcgactgccacaaggttggctgcccggcggaggcggccgaggagatcgcggcggcggcgcgggtgcgggaggcgcggcagcgggcggccgcggcggcgagccgcatgccgccggcgccggaggacccggagctcgaccagttcatggaggattactgcaagctgctcgtggagtgtaaggaggagctcagccggccgctccaggaggccgaggagttcctcaggacggtggagtcagagctcaactccatcaattctgggccaccccttacagctctaatctcagaatccaaagccggcctcgattcgtcggacgacgacgaacacgaagacggcagcggcatggagatgatggaggccgcggaagacgaggacctcggcatcatcgaccctcgctccgacgacaaagcgctgaagaggcacctgctgaggaagtacagcggttacctgggaggcctgaggaaggagctgtcgaagaagaggaagaaagggaagctccccaaggaggcgaggcagaagctgctcacctggtgggagctccattaccggtggccgaacccgtcggagatggagaagatcgccctcgccgagtcgacggggctggagcagaagcagatcaacaactgtttcatcaaccagcggaagcgccactggaagcccacggaggagatggagttcgccgtcatggaggcctaccaccaccagagcaccgatgccgcggcggcgttctacgtcgacgtcgacgcccgcctcgtcggagcgacggcggcggctccggcatcggccgtgtacaccgccaggccggatcatggcgtgtggcgcgcatagccgttgctcgattcgcccgttgccgccatctggaattaatctgaactgcccttgcctgttacatatagtagggttgttgatgatggtttcatatgtttttccccaaagggaaagtcagcttggacattggaccaatcaagaaatgaaatctcagc

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