LOCUS       NM_001246413            2174 bp    mRNA    linear   PRI 24-JUL-2024
DEFINITION  Pan troglodytes claudin 11 (CLDN11), mRNA.
ACCESSION   NM_001246413 XM_003310097 XM_516873
VERSION     NM_001246413.1
KEYWORDS    RefSeq.
SOURCE      Pan troglodytes (chimpanzee)
  ORGANISM  Pan troglodytes
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Pan.
REFERENCE   1  (bases 1 to 2174)
  AUTHORS   Kim,R.N., Kim,D.W., Choi,S.H., Chae,S.H., Nam,S.H., Kim,D.W.,
            Kim,A., Kang,A., Park,K.H., Lee,Y.S., Hirai,M., Suzuki,Y.,
            Sugano,S., Hashimoto,K., Kim,D.S. and Park,H.S.
  TITLE     Major chimpanzee-specific structural changes in sperm
            development-associated genes
  JOURNAL   Funct Integr Genomics 11 (3), 507-517 (2011)
   PUBMED   21484476
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK306887.1.
            
            On or before Oct 10, 2011 this sequence version replaced
            XM_516873.3, XM_003310097.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK306887.1, GABC01004101.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN01120800, SAMN01120804
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2174
                     /organism="Pan troglodytes"
                     /mol_type="mRNA"
                     /db_xref="taxon:9598"
                     /chromosome="2"
                     /map="2"
     gene            1..2174
                     /gene="CLDN11"
                     /gene_synonym="claudin-11"
                     /note="claudin 11"
                     /db_xref="GeneID:460846"
                     /db_xref="VGNC:VGNC:1780"
     exon            1..425
                     /gene="CLDN11"
                     /gene_synonym="claudin-11"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    164..166
                     /gene="CLDN11"
                     /gene_synonym="claudin-11"
                     /note="upstream in-frame stop codon"
     CDS             200..823
                     /gene="CLDN11"
                     /gene_synonym="claudin-11"
                     /note="claudin 11 (oligodendrocyte transmembrane protein)"
                     /codon_start=1
                     /product="claudin-11"
                     /protein_id="NP_001233342.1"
                     /db_xref="GeneID:460846"
                     /db_xref="VGNC:VGNC:1780"
                     /translation="

MVATFLQVVGFVTSFVGWIGVIVTTSTNDWVVTCGYTIPTCRKLDELGSKGLWADCVMATGLYHCKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQLAGVLLILLALCALVATIWFPVCAHRETTIVSFGYSLYAGWIGAVLCLVGGCVILCCAGDAQAFGENRFYYTAGSSSPTHAKSAHV"

     misc_feature    215..715
                     /gene="CLDN11"
                     /gene_synonym="claudin-11"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
     exon            426..590
                     /gene="CLDN11"
                     /gene_synonym="claudin-11"
                     /inference="alignment:Splign:2.1.0"
     exon            591..2160
                     /gene="CLDN11"
                     /gene_synonym="claudin-11"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

agcgctgctgtcgccgccgtgcgcccttcgccgctgagctcgcagcctccggcgcccacctccacctccagtgtcccgcctcgggccgtcgccctccagcggctcgcgagcgtgggagacgtacctgggcaggcactgtccagcccaggcccaggcacagccgtgaggggcgaggcacggggacatcctggcggccaccatggtggccacgtttctgcaggtggtgggcttcgtcacgagcttcgtgggctggatcggcgtcatcgtgaccacctccaccaatgactgggtggtgacctgcggctacaccatccccacctgccgcaagctggatgagctgggctccaaggggctgtgggccgactgcgtcatggccacggggctgtaccactgcaagcccctggtggacatcctcatcctgccgggctacgtgcaggcctgccgcgccctgatgattgctgcctcggtcctgggtctgccggccattttactgctgctgactgttcttccctgcatccggatgggccaggagcccggtgtggctaagtacaggcgggcccagctggctggtgttttgctcattctgctggctctctgcgcccttgttgccaccatctggttccctgtgtgcgcccaccgtgagaccaccatcgtgagctttggctactccctgtatgcaggctggattggtgctgtgctgtgcctcgtgggtggctgtgtcatcctctgctgtgctggagatgcccaggcctttggtgaaaaccgtttctactacactgcgggctctagctccccgactcatgcgaagagtgcccacgtataagagggctgcccggctgcccacagaggtgctgtagatgctgggcccagggccctaggtttgctcgtcacagtgtggggaagcccattcctctgccaggctctaaagccaaaggtctagaaaagcatcctgtctggcattttgtagtcttaacttctccccatttcccccatcttttggttgccttaaaagaaatctctagctcagataatgcccagacatttttttcccatggtgttgccactattagctcttttcttgggcattcttttgctgtttattaaaaatatattatatatattttgtttctttaaatttcaaatgttttgcaaacatcactgagttaggtgggggtggggaagagaaatacaagacacttttttttttttttttttttttttaaatagggccttactctgttgctcaggctggagtgcggtggtgtgatctcggctcatgtagcctcaacctccctggctcaagtgatcctcctgcctcagcctcccaagtagctgggactacaggcgttcactactacacccagctaatttttaagttttttgtagagatgagggctccctatgttgcccaggttggtctggaactcctggactcaaagtatcctcccgcctcggcctcccaaagtgttgggattataggagtgagccaccacaccggccaagatgcttttcaaactgatacagatgacaatgggagcctcataaagatggcttttgtttcttcccttcaaggtcatttacttgtacgagacagaaaaagatagcattggggacatgggatgagggagggagggcaatagtggaacgaactttccatgggaaactttcccttttgtaagttgagggccaggggtagggatattttttagtttgtgattttgcatttatctgtacatactttttcaagattgatcatttttataaccatggttttcctgaaatcctcagttcatcaatatgaaggaaatgaaccacatagactttatgcaataaataacagtgcaagtgagtataactttaactgatgttccacaaaacatttttgatttcaggtttatatgatgtagtttttaatcgtacattttcatatgcttcaaactaacacatttttaaagctttcccccacttttctctctatttgcattgttagccatcttgaagtgatgttgtttaacataagttgtactgttgaatttggctttacgggtgtaaacactgatggtatatcagtatctgagaccccagactctccaaatactgatggtgcattttattcttgaagtgaaatctgtgcaataaaataacagactgtctgcaaaaaaaaaaaaaaaaaa

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