LOCUS       NM_001140475            2065 bp    mRNA    linear   VRT 12-JAN-2022
DEFINITION  Salmo salar vimentin (vim), mRNA.
ACCESSION   NM_001140475
VERSION     NM_001140475.1
KEYWORDS    RefSeq.
SOURCE      Salmo salar (Atlantic salmon)
  ORGANISM  Salmo salar
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii;
            Salmoniformes; Salmonidae; Salmoninae; Salmo.
REFERENCE   1  (bases 1 to 2065)
  AUTHORS   Ramberg S, Hoyheim B, Ostbye TK and Andreassen R.
  TITLE     A de novo Full-Length mRNA Transcriptome Generated From
            Hybrid-Corrected PacBio Long-Reads Improves the Transcript
            Annotation and Identifies Thousands of Novel Splice Variants in
            Atlantic Salmon
  JOURNAL   Front Genet 12, 656334 (2021)
   PUBMED   33986770
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2065)
  AUTHORS   Sagstad A, Grotmol S, Kryvi H, Krossoy C, Totland GK, Malde K, Wang
            S, Hansen T and Wargelius A.
  TITLE     Identification of vimentin- and elastin-like transcripts
            specifically expressed in developing notochord of Atlantic salmon
            (Salmo salar L.)
  JOURNAL   Cell Tissue Res 346 (2), 191-202 (2011)
   PUBMED   22057848
  REMARK    GeneRIF: Vimentin- like transcript was expressed in both
            chordocytes and chordoblasts, whereas the elastin- like transcript
            was uniquely expressed in the chordoblasts lining the notochordal
            sheath.
REFERENCE   3  (bases 1 to 2065)
  AUTHORS   Leong JS, Jantzen SG, von Schalburg KR, Cooper GA, Messmer AM, Liao
            NY, Munro S, Moore R, Holt RA, Jones SJ, Davidson WS and Koop BF.
  TITLE     Salmo salar and Esox lucius full-length cDNA sequences reveal
            changes in evolutionary pressures on a post-tetraploidization
            genome
  JOURNAL   BMC Genomics 11, 279 (2010)
   PUBMED   20433749
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BT045932.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BT045932.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           SAMN00779696, SAMN02597923
                                           [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2065
                     /organism="Salmo salar"
                     /mol_type="mRNA"
                     /db_xref="taxon:8030"
                     /chromosome="ssa19"
                     /map="ssa19"
     gene            1..2065
                     /gene="vim"
                     /gene_synonym="vime"
                     /note="vimentin"
                     /db_xref="GeneID:100195446"
     exon            1..657
                     /gene="vim"
                     /gene_synonym="vime"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    83..85
                     /gene="vim"
                     /gene_synonym="vime"
                     /note="upstream in-frame stop codon"
     CDS             104..1492
                     /gene="vim"
                     /gene_synonym="vime"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="NP_001133947.1"
                     /db_xref="GeneID:100195446"
                     /translation="

MNRTTNRQTTSSSSYKRMFGGEGRPGVGMARSTLSSRQYSSPVRSSRMSYSVSSAPPSIYASKNIRLRSSAPMPRLSSETVDFALSDAINSEFKANRTNEKAEMQHLNDRFASYIDKVRFLEQQNKILLAELEQLKGKGASRIGDLYEDEMRDLRRQVDQLTNEKAHVEVDRDNLGEDIERLREKLQDEMIQKEEAEHNLQSFRQDVDNASLARLDLERKVESLQEEILFLRKLHDEEVAELQAQIQDHHVQIDMDVAKPDLTAALRDVRVQYETLASRNLQESEDWYKSKFADLSEAANRNTDAIRQAKQEANEYRRQVQALTCEVDSLKGTNESMERQMRELEESFGCEANNFQDTISRLEDDIRNMKDEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRITTPMPNFSSFNLRESMLEARPMIDNMSKKVVIKTIETRDGHVINESTQNHDDLE"

     misc_feature    131..397
                     /gene="vim"
                     /gene_synonym="vime"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:461414"
     misc_feature    398..1324
                     /gene="vim"
                     /gene_synonym="vime"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:459643"
     exon            658..718
                     /gene="vim"
                     /gene_synonym="vime"
                     /inference="alignment:Splign:2.1.0"
     exon            719..814
                     /gene="vim"
                     /gene_synonym="vime"
                     /inference="alignment:Splign:2.1.0"
     exon            815..976
                     /gene="vim"
                     /gene_synonym="vime"
                     /inference="alignment:Splign:2.1.0"
     exon            977..1102
                     /gene="vim"
                     /gene_synonym="vime"
                     /inference="alignment:Splign:2.1.0"
     exon            1103..1323
                     /gene="vim"
                     /gene_synonym="vime"
                     /inference="alignment:Splign:2.1.0"
     exon            1324..1367
                     /gene="vim"
                     /gene_synonym="vime"
                     /inference="alignment:Splign:2.1.0"
     exon            1368..1450
                     /gene="vim"
                     /gene_synonym="vime"
                     /inference="alignment:Splign:2.1.0"
     exon            1451..2048
                     /gene="vim"
                     /gene_synonym="vime"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cagaggttttatcacacactgaagtggaagtccagtttgagagaaggcatttacaccactttttttaagaaagaagaaaccttagggaccaaaggattacaatatgaaccggacaaccaacaggcaaaccacctcttcatcttcttacaagaggatgttcggcggcgaaggacggcccggtgtcgggatggctcggtccaccttgtctagccgccagtactcgagcccggtgcgctcctctcggatgtcctacagcgtctcctccgctccgccgagcatctacgcctccaagaatatccgtcttcgcagcagcgccccgatgccccggctctcgtcggaaacggtggatttcgccctgtccgatgccatcaactcggagttcaaagccaaccggaccaacgagaaggcggagatgcagcacctcaatgaccggttcgccagctacatcgacaaagtgcgctttctggagcagcaaaacaagatcctgttagcagagctggagcagctaaagggcaaaggcgcgtcccgtatcggtgatctgtacgaggatgagatgagggatctgcggaggcaggtggaccagctcaccaatgagaaagcccatgtcgaagtggaccgggacaacctgggagaggacatcgagaggctcagagagaagcttcaagatgagatgatccagaaagaggaagcggagcacaacctgcagagcttcagacaggatgtggacaatgcctcccttgctcgtctcgacctggagaggaaggtggagtctcttcaggaggaaatcctcttcctcaggaagctgcatgacgaggaggttgctgagctgcaggcacagatccaggatcaccatgtccagatcgatatggatgtggctaagcctgatctgacagctgccctgagggacgtgcgtgtgcagtacgagaccctggccagcaggaacctccaggagtctgaagactggtacaagtccaagtttgctgacctgtcggaggctgcgaaccgtaacaccgatgccatccggcaggccaagcaggaggctaacgagtacaggcgtcaggtacaggccctaacctgtgaggtggactctctcaaaggaactaatgagtccatggagcgtcagatgagggagctggaggagagctttggctgcgaggctaataacttccaggacaccatctctcgcctggaggacgacatcaggaacatgaaggatgagatggcccgtcacctcagagagtaccaggaccttctcaatgtcaagatggccctggacatagagatcgccacctacaggaagctgctggagggagaggagagcagaatcaccactcccatgcccaacttctcatcatttaacctgagagaatccatgcttgaggcaagaccaatgattgacaacatgtcaaagaaggttgtgatcaagaccattgaaactagagatggtcatgtgatcaatgagtccacccagaaccatgatgacttggagtgaacatcacatagcatgtctctattgagaagagaaaatagttagcagcagcatactgggggaaaaatacactgttgggggatgagaaggcaaaatgggatatttctgttgtgagtaaaactaaacaaaaacagctttaaaagtgcctttttgacacgttagggtacttgctgatctggtagggttgttgctaggtaggctagacactgtttagaggagatgaaaccagctttactgaatgtttctgtttgaccacagacactgggcaagtctcaaatgacactttttctgttatagcgctgtactttttatagggctctagtgaaagtagtgcactaagggaatagggtgtcatttgtgatgcaaccacactgagtctctagtttacacttgagctgttagacttagaccatagcaacactttgagcaatggctgtttttctattctaatttaccaaaatcatggaaaggattgaagcactgtttcatgtacacaaacaagaccaacaccaaactgtcaacgcttctgtaagtcaataaagctttgaggaaaataaaaaaaaaaaaaaaaaaaga

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