LOCUS       NM_001088863             933 bp    mRNA    linear   VRT 19-AUG-2024
DEFINITION  Xenopus laevis claudin 6, gene 2 L homeolog (cldn6.2.L), mRNA.
ACCESSION   NM_001088863 NM_001088864
VERSION     NM_001088863.1
KEYWORDS    RefSeq.
SOURCE      Xenopus laevis (African clawed frog)
  ORGANISM  Xenopus laevis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Xenopus.
REFERENCE   1  (bases 1 to 933)
  AUTHORS   Klein,S.L., Strausberg,R.L., Wagner,L., Pontius,J., Clifton,S.W.
            and Richardson,P.
  TITLE     Genetic and genomic tools for Xenopus research: The NIH Xenopus
            initiative
  JOURNAL   Dev Dyn 225 (4), 384-391 (2002)
   PUBMED   12454917
REFERENCE   2  (bases 1 to 933)
  AUTHORS   Kollmar,R., Nakamura,S.K., Kappler,J.A. and Hudspeth,A.J.
  TITLE     Expression and phylogeny of claudins in vertebrate primordia
  JOURNAL   Proc Natl Acad Sci U S A 98 (18), 10196-10201 (2001)
   PUBMED   11517306
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC068813.1.
            
            On Jul 25, 2007 this sequence version replaced NM_001088864.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC068813.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN13872681, SAMN16655532
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..933
                     /organism="Xenopus laevis"
                     /mol_type="mRNA"
                     /db_xref="taxon:8355"
                     /chromosome="9_10L"
                     /map="9_10L"
     gene            1..933
                     /gene="cldn6.2.L"
                     /gene_synonym="claudin A; cldn4L1; cldn6.2; cldna; Xcla;
                     XclnA"
                     /note="claudin 6, gene 2 L homeolog"
                     /db_xref="GeneID:398409"
                     /db_xref="Xenbase:XB-GENE-1009651"
     exon            1..17
                     /gene="cldn6.2.L"
                     /gene_synonym="claudin A; cldn4L1; cldn6.2; cldna; Xcla;
                     XclnA"
                     /inference="alignment:Splign:2.1.0"
     exon            18..918
                     /gene="cldn6.2.L"
                     /gene_synonym="claudin A; cldn4L1; cldn6.2; cldna; Xcla;
                     XclnA"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    46..48
                     /gene="cldn6.2.L"
                     /gene_synonym="claudin A; cldn4L1; cldn6.2; cldna; Xcla;
                     XclnA"
                     /note="upstream in-frame stop codon"
     CDS             52..696
                     /gene="cldn6.2.L"
                     /gene_synonym="claudin A; cldn4L1; cldn6.2; cldna; Xcla;
                     XclnA"
                     /note="claudin4L1"
                     /codon_start=1
                     /product="claudin 6, gene 2 L homeolog"
                     /protein_id="NP_001082332.1"
                     /db_xref="GeneID:398409"
                     /db_xref="Xenbase:XB-GENE-1009651"
                     /translation="

MASTGLQVLGMAMSIIGWVGCIITCAMPMWRVTAFIGNNIVVAQIIWEGLWMNCVVQSTGQMQCKVYDSMLALPQDLQAARALTVICILVALLAMLVGIVGAKCTNCIEDENTKAKVSMVSGVVFLVAGILMLIPVCWSANSIIRDFYNPLVVEAQKRELGAAIYIGWASSALMLLGGGLLCCSCPKKNDAPYSARYTAPSGPARSDYPSKNYV"

     misc_feature    61..567
                     /gene="cldn6.2.L"
                     /gene_synonym="claudin A; cldn4L1; cldn6.2; cldna; Xcla;
                     XclnA"
                     /note="PMP-22/EMP/MP20/Claudin family; Region:
                     PMP22_Claudin; cl21598"
                     /db_xref="CDD:473919"
ORIGIN      

gctggacattgctgcagatctctccaccttgaccactctccactgtaaaagatggcttctactggtctccaagtccttggcatggcaatgtccatcattggctgggtgggatgtataatcacctgtgccatgcccatgtggagggtgactgccttcattgggaacaacatagtggtggcacagatcatctgggaaggactgtggatgaattgcgttgtgcagagtactggacagatgcagtgcaaggtctacgactccatgttggctcttcctcaggatttgcaggctgcccgtgcccttactgtcatctgtatactggtagccctgctggccatgcttgttggtattgtgggagccaagtgcaccaactgcatagaagatgagaacaccaaggccaaagtcagcatggtatcgggtgtggtcttcctggtggctggtatcctcatgctcatccctgtctgctggtctgcaaacagcatcatccgtgacttctacaatcccctggtggtggaggctcagaagagagaactgggagctgccatatacatagggtgggcttcctctgctctgatgctcctgggtggaggcctcctgtgctgctcttgccccaagaagaacgacgctccctactctgcaagatacactgccccttcaggcccagcacggagtgactaccccagcaagaactatgtctaagggcataactagctggcttggacaattgcattcactctttatatacagtatgggacatatttatccgttccttcagcagatgtctggactgcatgtattgtgtgtttgttggggggggggcgcatttgtggagacttgtctgtttcttggatttttttttagctgcctcagaccttttttatatataactttgtaaacttttaaataaaactttctccattaaaaaaaaaaaaaaaa

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