LOCUS       NM_001025355            1453 bp    mRNA    linear   VRT 02-JUN-2024
DEFINITION  Gallus gallus homeobox B5 (HOXB5), mRNA.
ACCESSION   NM_001025355 XM_422888
VERSION     NM_001025355.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 1453)
  AUTHORS   Tang,H., Finn,R.D. and Thomas,P.D.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 1453)
  AUTHORS   Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C.,
            Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S.
  TITLE     Manual GO annotation of predictive protein signatures: the InterPro
            approach to GO curation
  JOURNAL   Database (Oxford) 2012, bar068 (2012)
   PUBMED   22301074
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 1453)
  AUTHORS   Wedden,S.E., Pang,K. and Eichele,G.
  TITLE     Expression pattern of homeobox-containing genes during chick
            embryogenesis
  JOURNAL   Development 105 (3), 639-650 (1989)
   PUBMED   2575515
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY875647.1.
            
            On Jul 14, 2005 this sequence version replaced XM_422888.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY875647.1, AB193110.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA103992290, SAMEA103992323
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1453
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="27"
                     /map="27"
     gene            1..1453
                     /gene="HOXB5"
                     /gene_synonym="Ghox-2.1; Hoxb-5"
                     /note="homeobox B5"
                     /db_xref="CGNC:52343"
                     /db_xref="GeneID:425096"
     exon            1..607
                     /gene="HOXB5"
                     /gene_synonym="Ghox-2.1; Hoxb-5"
                     /inference="alignment:Splign:2.1.0"
     CDS             61..855
                     /gene="HOXB5"
                     /gene_synonym="Ghox-2.1; Hoxb-5"
                     /note="homeo box B5; homeobox protein Hox-2.1"
                     /codon_start=1
                     /product="homeobox protein Hox-B5"
                     /protein_id="NP_001020526.1"
                     /db_xref="CGNC:52343"
                     /db_xref="GeneID:425096"
                     /translation="

MSSYFVNSFSGRYPNGPDYQLLNYGTSSSMNGSYRDSSTMHSSSYGYNYNGMDLSINRSASSSHFGAVGESSRGFPSPAQESRFRQASSCSLSSPDSLPCSNSESHGGKPAPSPSDQATSASTNTNFTELDETSASSGADEGTPISSSIPRAQAEPIATSTAATEGQAPQIFPWMRKLHISHDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLASAGSAFQP"

     misc_feature    625..804
                     /gene="HOXB5"
                     /gene_synonym="Ghox-2.1; Hoxb-5"
                     /note="Region: homeobox"
     misc_feature    628..798
                     /gene="HOXB5"
                     /gene_synonym="Ghox-2.1; Hoxb-5"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     exon            608..1453
                     /gene="HOXB5"
                     /gene_synonym="Ghox-2.1; Hoxb-5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cgtcaagcacagggttataacgaccacgagccacaaatcaagccctccaaaataacccaaatgagctcttactttgtaaactcgttctcagggcgctacccaaatggccccgactatcagttactaaattatgggaccagcagttccatgaacggttcttacagagattcaagcaccatgcattccagctcttatggctacaactacaatgggatggaccttagcatcaaccgctcagcctcctctagtcactttggggctgtgggggagagctcccgcggtttcccttctccagctcaggagagcaggtttagacaggcgtctagctgctccttatcttctcccgactcccttccctgctccaacagcgagagccatggaggcaagcccgccccgtccccctccgaccaagctacttctgccagcaccaacacaaatttcacagaactagacgagaccagcgcgtcctcgggagccgacgagggcactccaataagcagcagcatcccccgagcgcaggcagagcccatcgcaacctccacggcagcaacagaagggcaggcacctcagatattcccttggatgaggaaacttcacattagtcatgacatgactggaccagacgggaagagggcgaggacagcgtacactcgctaccagaccctggagttggaaaaggaattccacttcaatagatatctcacccgcaggaggagaatagagatcgctcacgctctgtgcctctccgagaggcagatcaaaatctggttccagaacaggaggatgaaatggaagaaggataataaactgaaaagcatgagcttagcttctgcgggcagcgcctttcagccataaattatagaggaaggaatatcgaggaaagaagaggaaacattaaataaatccgtaaataaataaagcgcagcagatcttagttttggagtactgtacagtgaggcaccttcttttcggcatgttgttgctattcgaaaccgacgcgtatggtacctttatcccaggactgagttcatgtcgtggttttttcttttttgggttgatttattaatttttttcctattatttttttttaattattattaaattttatttccagatgctccccatgctctcgttgtttttataaatgtacgtgtccgtgctatcttgatgctttctggaaagccagcatgttttatgtgagccctataaatgttataacttatttatgagatggtaacagataacgattgtttgtttatttgttgctttttccccttcctgagtttactgctttgggggtgagtttttctctgcctgagctaaaatcgggggttcctgcactacagtcgcagtaaaaaataataataagcaagaaaaaaaaacataaaaaagagggggaaaaaagagaaaaaaaagggggaaaaagattaaaaaaatttaaaaaggggaaaaa

//