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2024-03-29 17:01:13, GGRNA : RefSeq release 60 (20130726)

LOCUS       XM_003960957            1269 bp    mRNA    linear   PRI 30-OCT-2012
DEFINITION  PREDICTED: Homo sapiens double homeobox 4 like 4 (DUX4L4), mRNA.
ACCESSION   XM_003960957
VERSION     XM_003960957.1  GI:410170258
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_001841145) annotated using gene prediction method: GNOMON.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider :: NCBI
            Annotation Status   :: Full annotation
            Annotation Version  :: Homo sapiens Annotation Release 104
            Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline
            Annotation Method   :: Best-placed RefSeq; Gnomon
            Features Annotated  :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1269
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="Unknown"
                     /sex="male"
                     /dev_stage="adult"
     gene            1..1269
                     /gene="DUX4L4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GNOMON. Supporting evidence
                     includes similarity to: 2 Proteins"
                     /db_xref="GeneID:441056"
                     /db_xref="HGNC:38686"
     CDS             1..1269
                     /gene="DUX4L4"
                     /codon_start=1
                     /transl_except=(pos:61..63,aa:OTHER)
                     /transl_except=(pos:331..333,aa:OTHER)
                     /transl_except=(pos:421..423,aa:OTHER)
                     /product="LOW QUALITY PROTEIN: double homeobox 4 like 4"
                     /protein_id="XP_003961006.1"
                     /db_xref="GI:410170259"
                     /db_xref="GeneID:441056"
                     /db_xref="HGNC:38686"
                     /translation="
MALPTSSDSTLPTEAQGRGRXRRLVWTPXQSEVLRTCFERNPYPGIATSDQLAQAIVIPEPRVQIWFQNERSRQLRQHQRDTRPGPRRRGPQEGRQKRTAVTVSQTALLLXAFEKDRFPGIIAREELARETGLPESRIQIXFQNRRARHPGQIGRANMQAGGLFNVAPGRYQPAPSWVDFAHTGAWGTVLHAPHVPCAPGDLPQGTFVSQAARAVPVLQPSQAAPAEGISQPTPACWDFAYTTPAPPEGALSHPQAPXWPPHPGKSREDRDPQCNGLLGPCTVGQPGPAQAGPQGQGVLAPLTSQGSPWWGWGRGPQVTRATWEPQAGTSPPPQPAPPEASPRQGHMQGIPAPSQVLQEPGHSSALPSGLLLDELLVSPEFLQQVQPFLEKEAPGELEALEETTSLEAPLREEECRALLEEL
"
     misc_feature    58..234
                     /gene="DUX4L4"
                     /note="Homeodomain;  DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:28970"
     misc_feature    order(58..72,76..78,127..129,145..147,184..186,190..195,
                     202..207,211..219,223..228)
                     /gene="DUX4L4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:28970"
     misc_feature    order(64..66,73..75,193..195,202..207,214..216)
                     /gene="DUX4L4"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:28970"
     misc_feature    295..447
                     /gene="DUX4L4"
                     /note="Homeodomain;  DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:28970"
     misc_feature    order(295..297,301..303,352..354,370..372,409..411,
                     415..420,427..432,436..444)
                     /gene="DUX4L4"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:28970"
     misc_feature    order(298..300,418..420,427..432,439..441)
                     /gene="DUX4L4"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:28970"
     variation       81
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:192034245"
     variation       88
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:181644038"
     variation       176
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:199875395"
     variation       217
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201176248"
     variation       308
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:202126523"
     variation       593
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:371128388"
     variation       671
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:374300878"
     variation       685
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377664900"
     variation       717
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:370872228"
     variation       737
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375389164"
     variation       744
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:368001385"
     variation       788
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:373672614"
     variation       800
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:367563801"
     variation       808
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:372231463"
     variation       821
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374471230"
     variation       833
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368371772"
     variation       840
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:371877388"
     variation       846
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376224108"
     variation       879
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:369280901"
     variation       900
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:371910220"
     variation       920
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:74554690"
     variation       929
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:199891345"
     variation       932
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:200997204"
     variation       933
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:79557605"
     variation       936
                     /gene="DUX4L4"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:77750740"
     variation       938
                     /gene="DUX4L4"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:201426413"
     variation       939
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:202166276"
     variation       943
                     /gene="DUX4L4"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:74372639"
     variation       947
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:200466727"
     variation       949
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:201390942"
     variation       954
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:199597415"
     variation       963
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:75415706"
     variation       965
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200506495"
     variation       966
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200991186"
     variation       968
                     /gene="DUX4L4"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:201445448"
     variation       969
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:75825492"
     variation       980
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:200921186"
     variation       981
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:76157822"
     variation       990
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:72499998"
     variation       1001
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:74328744"
     variation       1002
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:199879627"
     variation       1003
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:78088357"
     variation       1006
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:75108513"
     variation       1007
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:78443540"
     variation       1009
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:79196034"
     variation       1012
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:75800627"
     variation       1017
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:77213040"
     variation       1023
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:74688914"
     variation       1027
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:77310966"
     variation       1052
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374952787"
     variation       1103
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:368730197"
     variation       1130
                     /gene="DUX4L4"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:372827166"
     variation       1141
                     /gene="DUX4L4"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:374525453"
     variation       1154
                     /gene="DUX4L4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:377716962"
ORIGIN      
atggccctcccgacatcttcagacagcaccctccccacagaagcccagggacggggacggtgaaggagactcgtttggaccccgnagcaaagtgaggtcctgcgaacctgctttgagcggaacccgtacccgggcatcgccaccagtgatcagctggcccaggccattgtgattccggagcccagggtccagatttggtttcagaatgagaggtcacgccagctgaggcagcaccagcgggatactcggcccgggcccaggagacgtggtccgcaagaaggcaggcaaaagcggaccgccgtcactgtatcccagactgccctgctactctgagcctttgagaaggatcgctttccaggcatcatcgccagggaagagctggccagagagacaggcctccctgagtccaggattcagatctgatttcagaatcgaagggccaggcacccgggacagattggcagggcgaacatgcaagcaggtggcctgttcaacgtggctcccggccggtatcaacctgctccctcgtgggtcgactttgcccacaccggcgcctggggaacagttcttcacgcaccccatgtgccctgcgcacctggggatctcccacaggggactttcgtgagccaggcagcgagggccgtccccgtgctccagccaagccaggccgcaccggcagaggggatctcccaacctaccccagcatgctgggattttgcctacaccactccggctcctccggaaggtgcgctctcccaccctcaggctccgnggtggcctccgcacccgggcaaaagccgggaggaccgggacccgcagtgcaacggcctgctgggcccttgcactgtgggacagcctgggcccgctcaagcggggccacagggccaaggtgtgcttgcgccactcacgtcccagggtagtccgtggtggggctggggccggggtccccaggtcaccagggcgacgtgggaaccccaagccgggacatctcctcctccccagcctgcacccccggaggcctccccgcggcaggggcacatgcaaggcatcccggcgccctcccaggtgctccaggagccggggcattcatctgcacttccctctggcctgctgctggatgagctcctggtgagcccggagtttctgcagcaggtgcaacctttcctagaaaaagaggccccgggagagctggaggccttggaagagaccacctcgctagaagcaccccttagagaggaagaatgccgggctctgctggaggagctttag
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:441056 -> Molecular function: GO:0000976 [transcription regulatory region sequence-specific DNA binding] evidence: IEA
            GeneID:441056 -> Molecular function: GO:0003700 [sequence-specific DNA binding transcription factor activity] evidence: IEA
            GeneID:441056 -> Biological process: GO:0006351 [transcription, DNA-dependent] evidence: IEA
            GeneID:441056 -> Cellular component: GO:0005634 [nucleus] evidence: IEA

by @meso_cacase at DBCLS
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