LOCUS       NR_103546               6289 bp    RNA     linear   PRI 17-JUL-2013
DEFINITION  Homo sapiens SPECC1L-ADORA2A readthrough (SPECC1L-ADORA2A),
            non-coding RNA.
ACCESSION   NR_103546
VERSION     NR_103546.1  GI:511773003
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 6289)
  AUTHORS   Djebali,S., Lagarde,J., Kapranov,P., Lacroix,V., Borel,C.,
            Mudge,J.M., Howald,C., Foissac,S., Ucla,C., Chrast,J., Ribeca,P.,
            Martin,D., Murray,R.R., Yang,X., Ghamsari,L., Lin,C., Bell,I.,
            Dumais,E., Drenkow,J., Tress,M.L., Gelpi,J.L., Orozco,M.,
            Valencia,A., van Berkum,N.L., Lajoie,B.R., Vidal,M.,
            Stamatoyannopoulos,J., Batut,P., Dobin,A., Harrow,J., Hubbard,T.,
            Dekker,J., Frankish,A., Salehi-Ashtiani,K., Reymond,A.,
            Antonarakis,S.E., Guigo,R. and Gingeras,T.R.
  TITLE     Evidence for transcript networks composed of chimeric RNAs in human
            cells
  JOURNAL   PLoS ONE 7 (1), E28213 (2012)
   PUBMED   22238572
  REMARK    GeneRIF: The authors use rapid amplification of cDNA ends, tiling
            arrays, and deep RNA sequencing to identify chimeric transcripts on
            human chromosomes 21 and 22. They found that for 492 protein coding
            genes studied, 85% of these genes had boundaries that extended
            beyond the current annotated termini.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP000354.1, AB209022.1 and AP000355.1.
            
            Summary: This locus represents naturally occurring readthrough
            transcription between the neighboring SPECC1L (sperm antigen with
            calponin homology and coiled-coil domains 1-like) and ADORA2A
            (adenosine A2a receptor) genes on chromosome 22. The readthrough
            transcript is a candidate for nonsense-mediated mRNA decay (NMD)
            and is unlikely to produce a protein product. [provided by RefSeq,
            Jun 2013].
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##RefSeq-Attributes-START##
            readthrough transcript :: includes exons from GeneID 135, 23384
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-81                AP000354.1         49346-49426
            82-2815             AB209022.1         1-2734
            2816-2816           AP000354.1         113050-113050
            2817-4346           AB209022.1         2736-4265
            4347-4511           AP000355.1         70658-70822
            4512-6289           AP000355.1         77669-79446
FEATURES             Location/Qualifiers
     source          1..6289
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9606"
                     /chromosome="22"
                     /map="22q11.23"
     gene            1..6289
                     /gene="SPECC1L-ADORA2A"
                     /note="SPECC1L-ADORA2A readthrough"
                     /db_xref="GeneID:101730217"
     misc_RNA        1..6289
                     /gene="SPECC1L-ADORA2A"
                     /product="SPECC1L-ADORA2A readthrough"
                     /db_xref="GeneID:101730217"
     exon            1..167
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            168..271
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            272..461
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            462..615
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            616..2246
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            2247..2454
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            2455..2528
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            2529..2704
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            2705..2868
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            2869..2960
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            2961..3082
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            3083..3173
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            3174..3257
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            3258..3414
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            3415..3517
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            3518..3634
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            3635..3694
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            3695..3905
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            3906..4511
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     exon            4512..6289
                     /gene="SPECC1L-ADORA2A"
                     /inference="alignment:Splign:1.39.8"
     polyA_signal    6245..6250
                     /gene="SPECC1L-ADORA2A"
     polyA_site      6272
                     /gene="SPECC1L-ADORA2A"
     polyA_site      6289
                     /gene="SPECC1L-ADORA2A"
ORIGIN      

tggccaagggcggggcccgcgagggaggccgggcggcccggcaagcggcgctgcggggtaggctgctttcctgaggccggactcaacgggtctcggctgagccaccgggtgagctcaccgcccagcccaaaccaggagattgcgagggagcgatgcggtgcagcgcgtgttcttggggaagatcccgactaagccattttccagtggcacctcttccatcatgagttcctgaggcagtccgatggggctactttattccagaacaatcacaatttgcttgtaaatgcatcacgaagaggcagcccagaatgaagaaagcaagcaggagtgttggctcagtgcctaaagtgtctgcaataagtaaaacgcaaacagcagaaaaaattaaacctgaaaacagctcttcagcatctacgggaggcaaacttgtaaaacctggaacagcagcatcattgtcaaagaccaagagcagtgatgaccttttagctggaatggccggaggggtaacggtgactaatggtgttaaaggaaagaaaagcacctgcccatctgcagcaccttcagcatctgcccctgccatgaccaccgtggagaacaaatccaagattagcacaggcacagcttcttcaaccaagcggagcacttctacaggtaataaagaatccagttctactagagaaagattacgtgaacgtacccgattaaaccagagcaaaaaactaccttctgcaggtcagggagctaatgacatggcattggccaaacgttcccgcagtcgaactgctacagaatgtgacgttcgtatgagcaagtctaagtcagacaatcagatcagtgacagagctgctttggaggccaaagtgaaggatcttctcacgctggcaaaaaccaaagacgtagaaattttacatttgagaaatgaactgcgagacatgcgtgcccagctgggcattaatgaggatcattctgagggtgatgaaaaatctgagaaggaaactattatggctcaccagccgactgatgtggagtccactttattgcagttgcaggaacagaatactgccatccgtgaagaactcaaccagctgaaaaatgaaaacagaatgttaaaggacaggttgaatgcattgggcttttccctagagcagaggttagacaattctgaaaaactgtttggctatcagtccctgagcccagaaatcacccctggtaaccagagcgatggaggaggaactctgacttcttcagtggaaggctctgcccctggctcagtggaggatctcttgagtcaggatgaaaatacactaatggaccatcagcacagtaactccatggacaatttagacagtgagtgcagtgaggtctaccagcccctcacatcgagcgatgatgcgctggatgcaccatcctcctcagagtcggaaggcatccccagcatagagcgctcccggaaggggagcagcgggaatgccagtgaagtgtccgtggcttgcctgactgaacggatacaccagatggaagagaaccaacacagtacaagtgaggaactccaggcaaccctgcaagagctagctgatttacagcagattacccaggaactgaatagtgaaaacgaaaggcttggagaagagaaggttattctgatggagtctttatgtcagcagagcgataagttggaacactttagtcgacagattgaatacttccgctctcttctagatgagcatcacatttcttatgtcatagatgaagatgtaaaaagtgggcgctatatggaattagagcaacgttacatggacctcgctgagaatgcccgttttgaacgggagcagcttcttggtgtccagcagcatttaagcaatactttgaaaatggcagaacaagacaataaggaagctcaagaaatgataggggcactcaaagaacgcagtcaccatatggagcgaattattgagtctgagcagaaaggaaaagcagccttggcagccacgttagaggaatacaaagccacagtggccagtgaccagatagagatgaatcgcctgaaggctcagctggagaatgaaaagcagaaagtggcagagctgtattctatccataactctggagacaaatctgatattcaggacctcctggagagtgtcaggctggacaaagaaaaagcagagactttggctagtagcttgcaggaagatctggctcatacccgaaatgatgccaatcgattacaggatgccattgctaaggtagaggatgaataccgagccttccaagaagaagctaagaaacaaattgaagatttgaatatgacgttagaaaaattaagatcagacctggatgaaaaagaaacagaaaggagtgacatgaaagaaaccatctttgaacttgaagatgaagtagaacaacatcgtgctgtgaaacttcatgacaacctcattatttctgatctagagaatacagttaaaaaactccaggaccaaaagcacgacatggaaagagaaataaagacactccacagaagacttcgggaagaatctgcggaatggcggcagtttcaggctgatctccagactgcagtagtcattgcaaatgacattaaatctgaagcccaagaggagattggtgatctaaagcgccggttacatgaggctcaagaaaaaaatgagaaactcacaaaagaattggaggaaataaagtcacgcaagcaagaggaggagcgaggccgggtatacaattacatgaatgccgttgagagagatttggcagccttaaggcagggaatgggactgagtagaaggtcctcgacttcctcagagccaactcctacagtaaaaaccctcatcaagtcctttgacagtgcatctcaagtaccaaaccctgctgcagctgcaattcctcgaacgcccctgagcccaagtcctatgaaaacccctcctgcagcagctgtgtcccctatgcagatggagtctagttctgtcgcccacgctggaatgcagtggcgtgaccttggctcactgcaacctctgcctcctgggttcaagtgattctcctgcctcagccccctgagtagctgggactacagagacattccataagtggaccaatctcaacatccaaacccctgacagccctgtcagataagagaccaaactatggggaaatccctgttcaagagcatctgttaagaacatcttcagccagccggcctgcttccctgccaagagtgcctgcgatggaaagtgccaagaccctctcagtgtctcgacgaagtagtgaagaaatgaaacgggacatttctgcacaggagggagcgtcgccagcctctctgatggctatgggaaccacgtctccacagctttccctgtcctcttctccaacggcatctgtgactcccaccacccgaagccgaataagagaagaaaggaaagaccctctctcagcattggccagagaatatggaggatcaaagaggaacgccttgctgaagtggtgtcagaagaaaacagaaggctatcagaatattgacattacaaacttcagcagcagctggaatgatgggctggccttctgtgccctcctgcatacatatctccctgcccacattccatatcaagaactgaacagccaggataagagaaggaacttcatgctggctttccaggcagctgaaagtgtcggcatcaaatccacactggacattaatgaaatggtacggactgaacgacccgactggcagaacgtgatgctgtatgtgacggcgatctacaagtactttgagacctgagcatgccgggaggagccgccccaatagcgggggtacccctccacagcgaccgagcgacaccgacgccattagctacgcacccctgtaaagcttccagcaactctgggctgccccacagcgtgtgcctcaggaaccctgaagctgggctgagccatgatgctgctgccagaacccctgcagagggcctggtttcaggagactcagagtcctctgtgaaaaagcccttggagagcgccccagcagggctgcacttggctcctgtgaggaaggggctcaggggtctgggcccctccgcctgggccgggctgggagccaggcgggcggctgggctgcagcaatggaccgtgagctggcccagcccgcgtccgtgctgagcctgcctgtcgtctgtggccatgcccatcatgggctcctcggtgtacatcacggtggagctggccattgctgtgctggccatcctgggcaatgtgctggtgtgctgggccgtgtggctcaacagcaacctgcagaacgtcaccaactactttgtggtgtcactggcggcggccgacatcgcagtgggtgtgctcgccatcccctttgccatcaccatcagcaccgggttctgcgctgcctgccacggctgcctcttcattgcctgcttcgtcctggtcctcacgcagagctccatcttcagtctcctggccatcgccattgaccgctacattgccatccgcatcccgctccggtacaatggcttggtgaccggcacgagggctaagggcatcattgccatctgctgggtgctgtcgtttgccatcggcctgactcccatgctaggttggaacaactgcggtcagccaaaggagggcaagaaccactcccagggctgcggggagggccaagtggcctgtctctttgaggatgtggtccccatgaactacatggtgtacttcaacttctttgcctgtgtgctggtgcccctgctgctcatgctgggtgtctatttgcggatcttcctggcggcgcgacgacagctgaagcagatggagagccagcctctgccgggggagcgggcacggtccacactgcagaaggaggtccatgctgccaagtcactggccatcattgtggggctctttgccctctgctggctgcccctacacatcatcaactgcttcactttcttctgccccgactgcagccacgcccctctctggctcatgtacctggccatcgtcctctcccacaccaattcggttgtgaatcccttcatctacgcctaccgtatccgcgagttccgccagaccttccgcaagatcattcgcagccacgtcctgaggcagcaagaacctttcaaggcagctggcaccagtgcccgggtcttggcagctcatggcagtgacggagagcaggtcagcctccgtctcaacggccacccgccaggagtgtgggccaacggcagtgctccccaccctgagcggaggcccaatggctatgccctggggctggtgagtggagggagtgcccaagagtcccaggggaacacgggcctcccagacgtggagctccttagccatgagctcaagggagtgtgcccagagccccctggcctagatgaccccctggcccaggatggagcaggagtgtcctgatgattcatggagtttgccccttcctaagggaaggagatctttatctttctggttggcttgaccagtcacgttgggagaagagagagagtgccaggagaccctgagggcagccggttcctactttggactgagagaagggagccccaggctggagcagcatgaggcccagcaagaagggcttgggttctgaggaagcagatgtttcatgctgtgaggccttgcaccaggtgggggccacagcaccagcagcatctttgctgggcagggcccagccctccactgcagaagcatctggaagcaccaccttgtctccacagagcagcttgggcacagcagactggcctggccctgagactggggagtggctccaacagcctcctgccacccacacaccactctccctagactctcctagggttcaggagctgctgggcccagaggtgacatttgacttttttccaggaaaaatgtaagtgtgaggaaaccctttttattttattacctttcactctctggctgctgggtctgccgtcggtcctgctgctaacctggcaccagagcctctgcccggggagcctcaggcagtcctctcctgctgtcacagctgccatccacttctcagtcccagggccatctcttggagtgacaaagctgggatcaaggacagggagttgtaacagagcagtgccagagcatgggcccaggtcccaggggagaggttggggctggcaggccactggcatgtgctgagtagcgcagagctacccagtgagaggccttgtctaactgcctttccttctaaagggaatgtttttttctgagataaaataaaaacgagccacatcgtgttttaagcttgtccaaatgagaa

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