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2024-04-25 12:31:21, GGRNA : RefSeq release 60 (20130726)
LOCUS NR_075080 3950 bp RNA linear PRI 18-JUL-2013
DEFINITION Homo sapiens leucine zipper transcription factor-like 1 (LZTFL1),
transcript variant 4, non-coding RNA.
ACCESSION NR_075080
VERSION NR_075080.1 GI:444909180
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3950)
AUTHORS Marion,V., Stutzmann,F., Gerard,M., De Melo,C., Schaefer,E.,
Claussmann,A., Helle,S., Delague,V., Souied,E., Barrey,C.,
Verloes,A., Stoetzel,C. and Dollfus,H.
TITLE Exome sequencing identifies mutations in LZTFL1, a BBSome and
smoothened trafficking regulator, in a family with Bardet--Biedl
syndrome with situs inversus and insertional polydactyly
JOURNAL J. Med. Genet. 49 (5), 317-321 (2012)
PUBMED 22510444
REMARK GeneRIF: The absence of LZTFL1 leads to a BBS phenotype with
enhanced developmental abnormalities associated with cellular Shh
dysfunction. LZTFL1 is a novel BBS gene (BBS17).
REFERENCE 2 (bases 1 to 3950)
AUTHORS Seo,S., Zhang,Q., Bugge,K., Breslow,D.K., Searby,C.C., Nachury,M.V.
and Sheffield,V.C.
TITLE A novel protein LZTFL1 regulates ciliary trafficking of the BBSome
and Smoothened
JOURNAL PLoS Genet. 7 (11), E1002358 (2011)
PUBMED 22072986
REMARK GeneRIF: Our findings suggest that LZTFL1 is an important regulator
of BBSome ciliary trafficking and hedgehog signaling
REFERENCE 3 (bases 1 to 3950)
AUTHORS Wei,Q., Zhou,W., Wang,W., Gao,B., Wang,L., Cao,J. and Liu,Z.P.
TITLE Tumor-suppressive functions of leucine zipper transcription
factor-like 1
JOURNAL Cancer Res. 70 (7), 2942-2950 (2010)
PUBMED 20233871
REMARK GeneRIF: LZTFL1 may inhibit tumorigenesis by stabilizing
E-cadherin-mediated adherens junction formation and promoting
epithelial cell differentiation.
REFERENCE 4 (bases 1 to 3950)
AUTHORS Davila,S., Froeling,F.E., Tan,A., Bonnard,C., Boland,G.J.,
Snippe,H., Hibberd,M.L. and Seielstad,M.
TITLE New genetic associations detected in a host response study to
hepatitis B vaccine
JOURNAL Genes Immun. 11 (3), 232-238 (2010)
PUBMED 20237496
REMARK GeneRIF: Observational study of gene-disease association. (HuGE
Navigator)
REFERENCE 5 (bases 1 to 3950)
AUTHORS Kiss,H., Kedra,D., Kiss,C., Kost-Alimova,M., Yang,Y., Klein,G.,
Imreh,S. and Dumanski,J.P.
TITLE The LZTFL1 gene is a part of a transcriptional map covering 250 kb
within the common eliminated region 1 (C3CER1) in 3p21.3
JOURNAL Genomics 73 (1), 10-19 (2001)
PUBMED 11352561
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from HY159348.1, DA408809.1,
AJ297351.1, AC098476.2 and BX112707.1.
Summary: This gene encodes a ubiquitously expressed protein that
localizes to the cytoplasm. This protein interacts with
Bardet-Biedl Syndrome (BBS) proteins and, through its interaction
with BBS protein complexes, regulates protein trafficking to the
ciliary membrane. Nonsense mutations in this gene cause a form of
Bardet-Biedl Syndrome; a ciliopathy characterized in part by
polydactyly, obesity, cognitive impairment, hypogonadism, and
kidney failure. This gene may also function as a tumor suppressor;
possibly by interacting with E-cadherin and the actin cytoskeleton
and thereby regulating the transition of epithelial cells to
mesenchymal cells. Alternative splicing of this gene results in
multiple transcript variants. [provided by RefSeq, Feb 2013].
Transcript Variant: This variant (4) lacks an internal exon,
compared to variant 1. This variant is represented as non-coding
because the use of the 5'-most translational start codon, as used
in variant 1, renders the transcript a candidate for
nonsense-mediated mRNA decay (NMD).
Sequence Note: This RefSeq record was created from transcript and
genomic sequence data to make the sequence consistent with the
reference genome assembly. The genomic coordinates used for the
transcript record were based on transcript alignments.
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-29 HY159348.1 2-30
30-675 DA408809.1 1-646
676-3302 AJ297351.1 758-3384
3303-3930 AC098476.2 173999-174626 c
3931-3950 BX112707.1 1-20 c
FEATURES Location/Qualifiers
source 1..3950
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="3"
/map="3p21.3"
gene 1..3950
/gene="LZTFL1"
/gene_synonym="BBS17"
/note="leucine zipper transcription factor-like 1"
/db_xref="GeneID:54585"
/db_xref="HGNC:6741"
/db_xref="MIM:606568"
misc_RNA 1..3950
/gene="LZTFL1"
/gene_synonym="BBS17"
/product="leucine zipper transcription factor-like 1,
transcript variant 4"
/db_xref="GeneID:54585"
/db_xref="HGNC:6741"
/db_xref="MIM:606568"
exon 1..170
/gene="LZTFL1"
/gene_synonym="BBS17"
/inference="alignment:Splign:1.39.8"
exon 171..365
/gene="LZTFL1"
/gene_synonym="BBS17"
/inference="alignment:Splign:1.39.8"
exon 366..426
/gene="LZTFL1"
/gene_synonym="BBS17"
/inference="alignment:Splign:1.39.8"
exon 427..498
/gene="LZTFL1"
/gene_synonym="BBS17"
/inference="alignment:Splign:1.39.8"
exon 499..564
/gene="LZTFL1"
/gene_synonym="BBS17"
/inference="alignment:Splign:1.39.8"
exon 565..642
/gene="LZTFL1"
/gene_synonym="BBS17"
/inference="alignment:Splign:1.39.8"
exon 643..819
/gene="LZTFL1"
/gene_synonym="BBS17"
/inference="alignment:Splign:1.39.8"
variation 778
/gene="LZTFL1"
/gene_synonym="BBS17"
/replace="a"
/replace="g"
/db_xref="dbSNP:1129183"
exon 820..923
/gene="LZTFL1"
/gene_synonym="BBS17"
/inference="alignment:Splign:1.39.8"
exon 924..3940
/gene="LZTFL1"
/gene_synonym="BBS17"
/inference="alignment:Splign:1.39.8"
polyA_signal 1272..1277
/gene="LZTFL1"
/gene_synonym="BBS17"
polyA_signal 1327..1332
/gene="LZTFL1"
/gene_synonym="BBS17"
polyA_signal 1382..1387
/gene="LZTFL1"
/gene_synonym="BBS17"
polyA_signal 1684..1689
/gene="LZTFL1"
/gene_synonym="BBS17"
polyA_signal 2323..2328
/gene="LZTFL1"
/gene_synonym="BBS17"
polyA_signal 2727..2732
/gene="LZTFL1"
/gene_synonym="BBS17"
variation 2890..2891
/gene="LZTFL1"
/gene_synonym="BBS17"
/replace=""
/replace="gtt"
/db_xref="dbSNP:3834206"
polyA_signal 3166..3171
/gene="LZTFL1"
/gene_synonym="BBS17"
polyA_signal 3242..3247
/gene="LZTFL1"
/gene_synonym="BBS17"
polyA_signal 3246..3251
/gene="LZTFL1"
/gene_synonym="BBS17"
polyA_site 3265
/gene="LZTFL1"
/gene_synonym="BBS17"
variation 3742
/gene="LZTFL1"
/gene_synonym="BBS17"
/replace="a"
/replace="g"
/db_xref="dbSNP:1058961"
polyA_signal 3911..3916
/gene="LZTFL1"
/gene_synonym="BBS17"
polyA_site 3940
/gene="LZTFL1"
/gene_synonym="BBS17"
ORIGIN
ataattgcagtccacgtgcctcggtttccgttagcaaccagaggcttctaaacaacctaccctccttccccattttctgtggtccaactaccctcggcgatcccaggcttggcggggcaccgcctggcctctcccgttcctttaggctgccgccgctgcctgccgccatggctggtggaggacaccttcaccatagatgaagtctctgaagtcctcaatggattacaagctgtggttcatagtgaggtggaatctgagctcatcaacactgcctataccaatgtgttacttctgcgacagctgtttgcacaagctgagaagtggtatcttaagctacagacagacatctctgaacttgaaaaccgagaattattagaacaagttgcagaatttgaaaaagcagagattacatcttcaaacaaaaagcccatcttagatgtcacaaagccaaaacttgctccacttaatgaaggtggaacagcagaactcctaaacaaggaaattttaagacttcaagaagagaatgagaaattgaagtcaaggttgaagaccattgaaatacaggctacaaatgcactggatgaaaagtcaaaactagaaaaagcactgcaagatttacagcttgatcaaggaaatcaaaaggattttataaaggcccaagacttaagtaacttagaaaacactgtcgctgccttaaagagtgagtttcagaagacacttaatgacaagacagaaaaccagaagtcactggaggagaatctggcgacagccaagcacgatctactcagggttcaggagcagctgcacatggctgaaaaggaattagaaaagaaatttcagcaaacagcagcttatcgaaacatgaaagagattcttaccaagaagaatgaccaaatcaaagatctgaggaaaagactggcacaatatgaacctgaagattaaaactgaagatttcctctggaagctaccacatgcaaacatacaagcagtctcacctcaggcatgtattttgaaaagcattttgtcatatcccctctccttatttttctaatatttagactttgaatatttagaactagagttcctattttcagctagttgaaaacagagaaaacctagtgattctgtctggtcatcccacacacctctctactgagtgctccagagtcttagctcacatgcactgagaattctttacagcaaagaagagatttttagagtgggaagaagaggcttatccttctgcattagtataaagagtctgtatttttaataaatgttaaataagctaacaatgtttgtacttatgcattccccatgggtaaaaataaataatagcattgttaaagatagttattaccaaaaaaagagagttattacaaataaatatgtctctttatttttaaaaatgaaatcttaattcatttactctatttgatgataaactataaattcattgaaaatgtgaattctattatgggtagcctttttaccaattataaggaaaatttacagcagtgaacatgaacattcacttagcttcctcagtctctccatcttaaagatcatttatcagaggaggttcagcattttttgcagcataacttttcatgagtctgtattactaatggataagtcaaatccatcctgcacttctacagtttagaaagtatctggactcagaataaatgtaatatttatacttgtttccagaatgttattttacattttatgttcaataagaacactttttaaaagacgtatattcaacataaaatcagctatcagacttcagattagactttatttatgtgggtctataataattgtattttcaagaggttttcactatatttgtattggcctggttttctcagacgattttggacaaatcattagaaactgggcatcatatccacagttatgtaaggcagtgatatactataaggataaacaaagtcaagtccataaagcaataatccctcagaaggaaagtccttacttttcacatattaatatttagtaatttttcctgcttctaaaagtgagagtatcacaccctaaatgaacactgtctactaagagacatcattccatttccacaaatgaagattttattccaagaaacgagtttactgattggagcatagggcttgttgttatttttattcaagcttttagtaatagccttgaatttattatttttcttataggctttttgttaaaatagtgaaggaacaaatgttaaagggtaagataatttccctgcaaaaggacacagaaggcagtcttaagaagatgaatggatgagagaagggagagaataaaatgcaataacgagccagcatttactatgtattttctcctcacctgtctctccatatttaggtcacttaccagtttctgtgcccttttggagcttttgttgagggcttcattctcaccctgtatttctttagccctaaattgacactctctccaaaaatccattccattgtctgtggaccaagatgttctatgtaattcagaagcagaactcttggctaaagggctagtgtggccttcagaaaccattcaattattttctccctacacctttgtcagtttgaaaccagtgaggaaaaaaggtatgttgataagaaacctatattgctaggtagaatttgtacttgttttcttggtagcagttttgaaatattctgtacagtacgttcctattgtttaataataaattcaaaaatatttctaaaaccttaaaaccaactatgccaagcattaagataaacaaatatgatgttctttgacgtaaatcaacgtgatgattctttcacatgtaaacacattttagtgtttctggtttgtcatttttgttgttgttgttgttgttgttatttactctataccctttagcaaaatacagttttaaatttttattgtttttagtagtttcccaactttaagacttatctaatttaactgagaaagaaagcctttttcatatatatatatattggatttctaaggatggtggtttgagccttgattagacttttgatgtgctaagccagacaggcagtctgtacattgatggccatcacaatgcagctttggtttaatttaattcaggcctgctgctgagttatgcacagactttttgttgaccaaaataaaatataaagggttttcttctgtttgacatttgtgttcattttttctctttatgtattacattttaacctatattaaataaatgtttaaatgataatttgcttatgtcttataaaactcagcataagaaaaatactgccctaccttgactgtgtaatcttatttgataaagcctttgctattcattatttccattctgattaactgaaagagatttatagagatgctcaaattttaagcccttggtgcttttagatatatattggttgcaaaagtttggcattaatgatttccctctgcttatgtgtaaatgcctatgttccaaagctttgccactagatattcaaatcataaattgtcatgtaagccagtcttccagaaagaaaagctatttcagcaaaatgatatttcacatttagacaaaacagtagtatttagacaataatattttgacaaaaccattttcaaaactgcttaggaaaaaggggaaatattatacttaaaggtaatgacctctgtcttgaatagaggtgagtgggttggtgacaactggtttggaggcttttgtgggggactgtggtgtcttttggattgtgtcatcagctccttcatcaagtaagcgtgtagctgttattgcctattgtaaaacatgaattgatgtgaacagtactcaatctcttacattatatgaagtataacttcctctcttttttgcctataatacatcctttaacttttacagattaaaaaaccactgttagacaaagcaaaaaaaaaaaaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:54585 -> Molecular function: GO:0005515 [protein binding] evidence: IPI
GeneID:54585 -> Molecular function: GO:0042802 [identical protein binding] evidence: IPI
GeneID:54585 -> Biological process: GO:0072594 [establishment of protein localization to organelle] evidence: IEA
GeneID:54585 -> Cellular component: GO:0005737 [cytoplasm] evidence: IEA
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