2024-03-28 20:29:46, GGRNA : RefSeq release 60 (20130726)
LOCUS NR_047658 4994 bp RNA linear PRI 17-JUL-2013 DEFINITION Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3), transcript variant 7, non-coding RNA. ACCESSION NR_047658 VERSION NR_047658.1 GI:385275070 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4994) AUTHORS Cai,Y., Jin,J., Swanson,S.K., Cole,M.D., Choi,S.H., Florens,L., Washburn,M.P., Conaway,J.W. and Conaway,R.C. TITLE Subunit composition and substrate specificity of a MOF-containing histone acetyltransferase distinct from the male-specific lethal (MSL) complex JOURNAL J. Biol. Chem. 285 (7), 4268-4272 (2010) PUBMED 20018852 REFERENCE 2 (bases 1 to 4994) AUTHORS Rea,S., Xouri,G. and Akhtar,A. TITLE Males absent on the first (MOF): from flies to humans JOURNAL Oncogene 26 (37), 5385-5394 (2007) PUBMED 17694080 REMARK Review article REFERENCE 3 (bases 1 to 4994) AUTHORS Wang,A.G., Yoon,S.Y., Oh,J.H., Jeon,Y.J., Kim,M., Kim,J.M., Byun,S.S., Yang,J.O., Kim,J.H., Kim,D.G., Yeom,Y.I., Yoo,H.S., Kim,Y.S. and Kim,N.S. TITLE Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags JOURNAL Biochem. Biophys. Res. Commun. 345 (3), 1022-1032 (2006) PUBMED 16712791 REFERENCE 4 (bases 1 to 4994) AUTHORS Mendjan,S., Taipale,M., Kind,J., Holz,H., Gebhardt,P., Schelder,M., Vermeulen,M., Buscaino,A., Duncan,K., Mueller,J., Wilm,M., Stunnenberg,H.G., Saumweber,H. and Akhtar,A. TITLE Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila JOURNAL Mol. Cell 21 (6), 811-823 (2006) PUBMED 16543150 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BP310677.1, BC024276.1 and AA526958.1. Transcript Variant: This variant (7) lacks three internal exons and contains two alternate internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD). PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-40 BP310677.1 1-40 41-4977 BC024276.1 1-4937 4978-4994 AA526958.1 2-18 c FEATURES Location/Qualifiers source 1..4994 /organism="Homo sapiens" /mol_type="transcribed RNA" /db_xref="taxon:9606" /chromosome="2" /map="2q11.2" gene 1..4994 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /note="KAT8 regulatory NSL complex subunit 3" /db_xref="GeneID:55683" /db_xref="HGNC:25473" misc_RNA 1..4994 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /product="KAT8 regulatory NSL complex subunit 3, transcript variant 7" /db_xref="GeneID:55683" /db_xref="HGNC:25473" exon 1..112 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 113..377 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" misc_feature 163..627 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="COORDINATES: ab initio prediction:ORF Finder" /note="long (>35aa) upstream ORF has strong Kozak signal; nonsense-mediated decay (NMD) candidate" exon 378..548 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" variation 483 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /replace="c" /replace="t" /db_xref="dbSNP:35809433" exon 549..734 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 735..787 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 788..919 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" misc_feature 809..2389 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="COORDINATES: alignment:Blast2seq::RefSeq|NM_001115016.2" /note="primary ORF has stop codon >50 nucleotides from the terminal splice site; nonsense-mediated decay (NMD) candidate" exon 920..1036 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 1037..1138 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 1139..1210 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 1211..1285 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 1286..1443 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 1444..1507 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 1508..1708 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 1709..1865 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 1866..2057 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" variation 2024 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /replace="c" /replace="t" /db_xref="dbSNP:35715176" exon 2058..2142 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 2143..2273 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" variation 2165 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /replace="a" /replace="g" /db_xref="dbSNP:34406082" exon 2274..2383 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 2384..2517 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" exon 2518..4994 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /inference="alignment:Splign:1.39.8" variation 3097 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /replace="c" /replace="t" /db_xref="dbSNP:11541470" variation 3478 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /replace="c" /replace="t" /db_xref="dbSNP:28362544" variation 3619 /gene="KANSL3" /gene_synonym="KIAA1310; NSL3; Rcd1" /replace="a" /replace="g" /db_xref="dbSNP:11541469" ORIGIN
agggagcgggaggcgggaggcgggggccaggcggctcctcctcgtcgcgaactctggatgaccttggccaaatcgcttcagttccccgagctggcgacttcgtctgtaaaatgtgactagcatgcagatacccatgctctgactttctgcccctccactgacatggcccaccggggtggggagagggacttccagacttcagctcgacgcatgggcacctcgctgctcttccagctttcagtgcatgaacgggagctggacctggtttttctggatcatagctatgccaagccttggagtgcccacccagatgccagtagtgcccgccccacccgcatgctctttgtcactccccggcggcagcacgaaagtaccattgaatcagacgtcccaatagatgtggagacggtcacatcaacgcctatgccactctatgacaatcagaaggcacgcagcgtgatgaatgagtgtgaacggcatgtcatctttgccaggactgatgcagatgcccctcctccaccagaggactgggaggagcatgtcaacaggcttgtaatgagccagtgctgcgccgtgttgctgtggacaagtgtgcaaggagagtgcggcaggctctggcaagtgtgagctgggataccaagctgatccagtggctgcacaccacccttgtggagaccttgagtctgcccatgctggcagcctacctggatgctttgcagacgctgaaggggaaggtcattttgaccttttgtgggtagcatggaattcgcagatatttcttctcagtatcccaaccttgattgaccggatgcttgtgtcatccaacacaaagactggggctgcaggagctgaggccttgtctctcctactgaagaggccctgggaccctgctgtgggtgtgctttctcataacaaaccaagcaaactccctggctctccgctgattctcatcgcctcctctggtccctccagctctgtgtttcccacttcacgccgccaccgcttctggcaatctcagctgtcctgcttgggcaaggtcatccctgtagccacccatctgctgaacaatggcagtggggtaggagttctacagtgtctcgagcatatgattggggcagtgagaagcaaagtgctggagattcacagccatttcccacacaaacccattatcttgattggctggaacacaggagctttggtggcctgtcatgtgtcagtaatggagtatgtcactgcagttgtctgccttgggtttcctctgcttactgtggatggccccagaggggatgtagatgatcccctcttggatatgaagactccagtcctctttgtcattggtcagaattcccttcaatgtcaccctgaagccatggaggacttccgggagaagattcgagctgagaacagcttggtggtggttgggggagctgatgacaatctcagaataagcaaagcaaagaagaaatcagaagggttgactcagagcatggtggacagatgtattcaggatgagattgtggactttctgactggagtgctcactcgtgctgagggtcacatgggctctgaacctcgggatcaggatgctgagaagaagaagaagccccgcgatgtggcccgcagagacttggcctttgaagtccctgagcggggcagtcgacctgcctccccagctgccaagctgcccgcctcaccctcaggctcagaggatctctccagtgtgtccagcagccccacctccagtcccaagaccaaagtgaccacagtgacctctgcccagaagtccagtcagattggaagttctcagctgctgaagagacatgtgcagcggacagaagctgtgctgacccacaaacaagctcaagttcccatttcatcagaaccaccagaggaaggagagaaagaggatcttagggttcagctgaagcgacaccatccctcgagtccccttcctggcagtaagacctccaaacgaccgaagatcaaggtgtcccttatctcccaaggggacacagctggagggccttgtgctccttcccaaggaagtgctccagaagctgcaggtgggaagcccatcaccatgacactggggcaggcttcagcaggggccaaggagctcacaggacttctcaccacagccaagtccagttcttctgaaggtggagtctcagccagcccagtcccttcagtggtctccagcagcactgcacccagtgccttgcacacactgcagagccgcctggtggccacatctcctggcagctccctcccaggggccacatcagccagcagcctcctccaaggcctcagcttcagcttgcaggatatcagcagcaagacctctggccttccagcaaatccctccccaggaccagccccacaggcttgaaggtccccaccaccattactctgacacttcgtggccagccgagcaggatcactacactgagccctatgggctcaggagcagccccatccgaggagtcctcttcccaggtgctgccctccagctcacagcgcctgcctccagcaccctgaagatgctgtgtgatatgtcctccttaccaagttggtgatggctgcctcatggtgggccctggacaggtgtgtggtcctgctgagctgtccacgtgtcggaagacctgtttaagacagtcatttttgcctctccgccaactgtcttcagagaaaccattaggttaggtgatacggtgccagcaagggaagcaccatcgtccaggatctgcaaatctggttcctgggaaccccagactcctcagcagatctggctgtacatggatcagaaccacttcttcccccgcttaagctgtggtttgacccaagggtcagcatataggactgcctgctgcatttaatgaaggtgtttccttttggaagtctgtgctaccctctgcgcctagttgggaggagacatccatctggtctgggatttcgggagttagaatggaaagctctttgctaaagactggagtcatcctggcctgccaactggtggttcagagccggacgggcttgttttggacatcactgttgccttcactcagcagccacgggagagtgctccccatgcaactccaccttagaaaccacgtcagatactgagtagcttgctgactcctggaaacttctggtttttgttagtatcataatgaaggcaaagagaactaggctgtcatctttcagcctctttgacttactctagatgttgggagcagtggttgccaggtgaaacctgggccctttgtctttttcaccatgctttgggcagtttctgtatccagagagtccgcaggttcagataagctgaagaagagtaatagaacagcaaaggaagtggcttgaaggatgtgctagtaagccctgtggtttgtgcttaggtctctgctctgctacccaaggaactggtggttcagctggagataaaaagaagaatttgccaagtcagagaagaaaccccaaccccggaaaatcctctgtctccagtctctggaggtgaagcagggacaataagctaaggtagtatcttggccatcccaggaaacttgtggcattaggacgatgaaggccatgcttcagtgttttcgtttctatttcatgagactttttgtcttcctgcttacaagtgggaagatgattgacagtgactctactatgcagggctgttggtaccaacctgagccctataggtggcagtccctggagaagtggtcacagaagatggagctctgatcccctgcttacctcttcacaacacttgtgtgcaaagatagttttagatttggtttagaagctatcctccagaacaggctcccatacttagaatgtttctagttaaggtaataaattaggcaacccaagtgtgactccactcaagtgtccttttctgtaggcaggaagggcccacaacatggcttaaaatgtagtccatggttctggcccacagtacagtgtgtatctataccaggtcacctgtgttcaatctgggagccttcctggccagtctgagtggcagccagaagggagctcatagtgtctaggagtctcaggcaaggtaggtcagggtactgtgggcaggggggatgtgtgtgataggagagggtaccctaaaccccataccttccctccctgacctgaaaagctgatctcaacagggattcacacagaattaggctgtgtttttgcattagctggtaggtgactttctcaaaattcttaaattcagaaagtatttagtaaacttgaggaaggtatgaaatctggaggaggcatccaggacccaggggtttgatagctttacaggtaggatcataccacaccaaaagagcagtggacaataagactatatgagctatatgaagcttttaggaatcatttaggacagacagagccctaaacaacccattcatgacttaagttgttggctcagtgtatgctggggacaaagaaaaactaacaagccgacctgcctttatgataaattctagtgtgcttacaagggatgacttcctgaggtgtgatctgtccaccttgaagaactccacaactgaagaaggggagctgtgagaacgtggattgttctacaacttgcacagggtaacagaggaagtggctgaggcctagagtcacgttttccagttcccttcgcaaactatatttcttggaacgcgaaaggaagctttacctatttcatagaagacctggaatccataacctcagaaggcaatattattgatagaaaatgtggaaggatcaggaagttcttagattcttggatgacagatgcatgttgatgccctatggagatgtccttgtgttttgaggtcactgaggtaggaagacctgtctactcttggtttcaccactagaacagtcttgggctggatgggttatagagctgagcggctgtgatggttctgtttttacattaacaaaaacaattaaaaacaccaaaaacaacatttggattgcttcag
//
ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:55683 -> Molecular function: GO:0043995 [histone acetyltransferase activity (H4-K5 specific)] evidence: IDA GeneID:55683 -> Molecular function: GO:0043996 [histone acetyltransferase activity (H4-K8 specific)] evidence: IDA GeneID:55683 -> Molecular function: GO:0046972 [histone acetyltransferase activity (H4-K16 specific)] evidence: IDA GeneID:55683 -> Biological process: GO:0043981 [histone H4-K5 acetylation] evidence: IDA GeneID:55683 -> Biological process: GO:0043982 [histone H4-K8 acetylation] evidence: IDA GeneID:55683 -> Biological process: GO:0043984 [histone H4-K16 acetylation] evidence: IDA GeneID:55683 -> Cellular component: GO:0000123 [histone acetyltransferase complex] evidence: IDA
by
@meso_cacase at
DBCLS
This page is licensed under a Creative Commons Attribution 2.1 Japan License.