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2024-03-28 20:29:46, GGRNA : RefSeq release 60 (20130726)

LOCUS       NR_047658               4994 bp    RNA     linear   PRI 17-JUL-2013
DEFINITION  Homo sapiens KAT8 regulatory NSL complex subunit 3 (KANSL3),
            transcript variant 7, non-coding RNA.
ACCESSION   NR_047658
VERSION     NR_047658.1  GI:385275070
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4994)
  AUTHORS   Cai,Y., Jin,J., Swanson,S.K., Cole,M.D., Choi,S.H., Florens,L.,
            Washburn,M.P., Conaway,J.W. and Conaway,R.C.
  TITLE     Subunit composition and substrate specificity of a MOF-containing
            histone acetyltransferase distinct from the male-specific lethal
            (MSL) complex
  JOURNAL   J. Biol. Chem. 285 (7), 4268-4272 (2010)
   PUBMED   20018852
REFERENCE   2  (bases 1 to 4994)
  AUTHORS   Rea,S., Xouri,G. and Akhtar,A.
  TITLE     Males absent on the first (MOF): from flies to humans
  JOURNAL   Oncogene 26 (37), 5385-5394 (2007)
   PUBMED   17694080
  REMARK    Review article
REFERENCE   3  (bases 1 to 4994)
  AUTHORS   Wang,A.G., Yoon,S.Y., Oh,J.H., Jeon,Y.J., Kim,M., Kim,J.M.,
            Byun,S.S., Yang,J.O., Kim,J.H., Kim,D.G., Yeom,Y.I., Yoo,H.S.,
            Kim,Y.S. and Kim,N.S.
  TITLE     Identification of intrahepatic cholangiocarcinoma related genes by
            comparison with normal liver tissues using expressed sequence tags
  JOURNAL   Biochem. Biophys. Res. Commun. 345 (3), 1022-1032 (2006)
   PUBMED   16712791
REFERENCE   4  (bases 1 to 4994)
  AUTHORS   Mendjan,S., Taipale,M., Kind,J., Holz,H., Gebhardt,P., Schelder,M.,
            Vermeulen,M., Buscaino,A., Duncan,K., Mueller,J., Wilm,M.,
            Stunnenberg,H.G., Saumweber,H. and Akhtar,A.
  TITLE     Nuclear pore components are involved in the transcriptional
            regulation of dosage compensation in Drosophila
  JOURNAL   Mol. Cell 21 (6), 811-823 (2006)
   PUBMED   16543150
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BP310677.1, BC024276.1 and AA526958.1.
            
            Transcript Variant: This variant (7) lacks three internal exons and
            contains two alternate internal exons, compared to variant 1. This
            variant is represented as non-coding because the use of the 5'-most
            expected translational start codon, as used in variant 1, renders
            the transcript a candidate for nonsense-mediated mRNA decay (NMD).
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-40                BP310677.1         1-40
            41-4977             BC024276.1         1-4937
            4978-4994           AA526958.1         2-18                c
FEATURES             Location/Qualifiers
     source          1..4994
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9606"
                     /chromosome="2"
                     /map="2q11.2"
     gene            1..4994
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /note="KAT8 regulatory NSL complex subunit 3"
                     /db_xref="GeneID:55683"
                     /db_xref="HGNC:25473"
     misc_RNA        1..4994
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /product="KAT8 regulatory NSL complex subunit 3,
                     transcript variant 7"
                     /db_xref="GeneID:55683"
                     /db_xref="HGNC:25473"
     exon            1..112
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            113..377
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    163..627
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="COORDINATES: ab initio prediction:ORF Finder"
                     /note="long (>35aa) upstream ORF has strong Kozak signal;
                     nonsense-mediated decay (NMD) candidate"
     exon            378..548
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     variation       483
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:35809433"
     exon            549..734
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            735..787
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            788..919
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    809..2389
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="COORDINATES:
                     alignment:Blast2seq::RefSeq|NM_001115016.2"
                     /note="primary ORF has stop codon >50 nucleotides from the
                     terminal splice site; nonsense-mediated decay (NMD)
                     candidate"
     exon            920..1036
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            1037..1138
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            1139..1210
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            1211..1285
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            1286..1443
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            1444..1507
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            1508..1708
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            1709..1865
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            1866..2057
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     variation       2024
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:35715176"
     exon            2058..2142
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            2143..2273
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     variation       2165
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:34406082"
     exon            2274..2383
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            2384..2517
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     exon            2518..4994
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /inference="alignment:Splign:1.39.8"
     variation       3097
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:11541470"
     variation       3478
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:28362544"
     variation       3619
                     /gene="KANSL3"
                     /gene_synonym="KIAA1310; NSL3; Rcd1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:11541469"
ORIGIN      


agggagcgggaggcgggaggcgggggccaggcggctcctcctcgtcgcgaactctggatgaccttggccaaatcgcttcagttccccgagctggcgacttcgtctgtaaaatgtgactagcatgcagatacccatgctctgactttctgcccctccactgacatggcccaccggggtggggagagggacttccagacttcagctcgacgcatgggcacctcgctgctcttccagctttcagtgcatgaacgggagctggacctggtttttctggatcatagctatgccaagccttggagtgcccacccagatgccagtagtgcccgccccacccgcatgctctttgtcactccccggcggcagcacgaaagtaccattgaatcagacgtcccaatagatgtggagacggtcacatcaacgcctatgccactctatgacaatcagaaggcacgcagcgtgatgaatgagtgtgaacggcatgtcatctttgccaggactgatgcagatgcccctcctccaccagaggactgggaggagcatgtcaacaggcttgtaatgagccagtgctgcgccgtgttgctgtggacaagtgtgcaaggagagtgcggcaggctctggcaagtgtgagctgggataccaagctgatccagtggctgcacaccacccttgtggagaccttgagtctgcccatgctggcagcctacctggatgctttgcagacgctgaaggggaaggtcattttgaccttttgtgggtagcatggaattcgcagatatttcttctcagtatcccaaccttgattgaccggatgcttgtgtcatccaacacaaagactggggctgcaggagctgaggccttgtctctcctactgaagaggccctgggaccctgctgtgggtgtgctttctcataacaaaccaagcaaactccctggctctccgctgattctcatcgcctcctctggtccctccagctctgtgtttcccacttcacgccgccaccgcttctggcaatctcagctgtcctgcttgggcaaggtcatccctgtagccacccatctgctgaacaatggcagtggggtaggagttctacagtgtctcgagcatatgattggggcagtgagaagcaaagtgctggagattcacagccatttcccacacaaacccattatcttgattggctggaacacaggagctttggtggcctgtcatgtgtcagtaatggagtatgtcactgcagttgtctgccttgggtttcctctgcttactgtggatggccccagaggggatgtagatgatcccctcttggatatgaagactccagtcctctttgtcattggtcagaattcccttcaatgtcaccctgaagccatggaggacttccgggagaagattcgagctgagaacagcttggtggtggttgggggagctgatgacaatctcagaataagcaaagcaaagaagaaatcagaagggttgactcagagcatggtggacagatgtattcaggatgagattgtggactttctgactggagtgctcactcgtgctgagggtcacatgggctctgaacctcgggatcaggatgctgagaagaagaagaagccccgcgatgtggcccgcagagacttggcctttgaagtccctgagcggggcagtcgacctgcctccccagctgccaagctgcccgcctcaccctcaggctcagaggatctctccagtgtgtccagcagccccacctccagtcccaagaccaaagtgaccacagtgacctctgcccagaagtccagtcagattggaagttctcagctgctgaagagacatgtgcagcggacagaagctgtgctgacccacaaacaagctcaagttcccatttcatcagaaccaccagaggaaggagagaaagaggatcttagggttcagctgaagcgacaccatccctcgagtccccttcctggcagtaagacctccaaacgaccgaagatcaaggtgtcccttatctcccaaggggacacagctggagggccttgtgctccttcccaaggaagtgctccagaagctgcaggtgggaagcccatcaccatgacactggggcaggcttcagcaggggccaaggagctcacaggacttctcaccacagccaagtccagttcttctgaaggtggagtctcagccagcccagtcccttcagtggtctccagcagcactgcacccagtgccttgcacacactgcagagccgcctggtggccacatctcctggcagctccctcccaggggccacatcagccagcagcctcctccaaggcctcagcttcagcttgcaggatatcagcagcaagacctctggccttccagcaaatccctccccaggaccagccccacaggcttgaaggtccccaccaccattactctgacacttcgtggccagccgagcaggatcactacactgagccctatgggctcaggagcagccccatccgaggagtcctcttcccaggtgctgccctccagctcacagcgcctgcctccagcaccctgaagatgctgtgtgatatgtcctccttaccaagttggtgatggctgcctcatggtgggccctggacaggtgtgtggtcctgctgagctgtccacgtgtcggaagacctgtttaagacagtcatttttgcctctccgccaactgtcttcagagaaaccattaggttaggtgatacggtgccagcaagggaagcaccatcgtccaggatctgcaaatctggttcctgggaaccccagactcctcagcagatctggctgtacatggatcagaaccacttcttcccccgcttaagctgtggtttgacccaagggtcagcatataggactgcctgctgcatttaatgaaggtgtttccttttggaagtctgtgctaccctctgcgcctagttgggaggagacatccatctggtctgggatttcgggagttagaatggaaagctctttgctaaagactggagtcatcctggcctgccaactggtggttcagagccggacgggcttgttttggacatcactgttgccttcactcagcagccacgggagagtgctccccatgcaactccaccttagaaaccacgtcagatactgagtagcttgctgactcctggaaacttctggtttttgttagtatcataatgaaggcaaagagaactaggctgtcatctttcagcctctttgacttactctagatgttgggagcagtggttgccaggtgaaacctgggccctttgtctttttcaccatgctttgggcagtttctgtatccagagagtccgcaggttcagataagctgaagaagagtaatagaacagcaaaggaagtggcttgaaggatgtgctagtaagccctgtggtttgtgcttaggtctctgctctgctacccaaggaactggtggttcagctggagataaaaagaagaatttgccaagtcagagaagaaaccccaaccccggaaaatcctctgtctccagtctctggaggtgaagcagggacaataagctaaggtagtatcttggccatcccaggaaacttgtggcattaggacgatgaaggccatgcttcagtgttttcgtttctatttcatgagactttttgtcttcctgcttacaagtgggaagatgattgacagtgactctactatgcagggctgttggtaccaacctgagccctataggtggcagtccctggagaagtggtcacagaagatggagctctgatcccctgcttacctcttcacaacacttgtgtgcaaagatagttttagatttggtttagaagctatcctccagaacaggctcccatacttagaatgtttctagttaaggtaataaattaggcaacccaagtgtgactccactcaagtgtccttttctgtaggcaggaagggcccacaacatggcttaaaatgtagtccatggttctggcccacagtacagtgtgtatctataccaggtcacctgtgttcaatctgggagccttcctggccagtctgagtggcagccagaagggagctcatagtgtctaggagtctcaggcaaggtaggtcagggtactgtgggcaggggggatgtgtgtgataggagagggtaccctaaaccccataccttccctccctgacctgaaaagctgatctcaacagggattcacacagaattaggctgtgtttttgcattagctggtaggtgactttctcaaaattcttaaattcagaaagtatttagtaaacttgaggaaggtatgaaatctggaggaggcatccaggacccaggggtttgatagctttacaggtaggatcataccacaccaaaagagcagtggacaataagactatatgagctatatgaagcttttaggaatcatttaggacagacagagccctaaacaacccattcatgacttaagttgttggctcagtgtatgctggggacaaagaaaaactaacaagccgacctgcctttatgataaattctagtgtgcttacaagggatgacttcctgaggtgtgatctgtccaccttgaagaactccacaactgaagaaggggagctgtgagaacgtggattgttctacaacttgcacagggtaacagaggaagtggctgaggcctagagtcacgttttccagttcccttcgcaaactatatttcttggaacgcgaaaggaagctttacctatttcatagaagacctggaatccataacctcagaaggcaatattattgatagaaaatgtggaaggatcaggaagttcttagattcttggatgacagatgcatgttgatgccctatggagatgtccttgtgttttgaggtcactgaggtaggaagacctgtctactcttggtttcaccactagaacagtcttgggctggatgggttatagagctgagcggctgtgatggttctgtttttacattaacaaaaacaattaaaaacaccaaaaacaacatttggattgcttcag
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:55683 -> Molecular function: GO:0043995 [histone acetyltransferase activity (H4-K5 specific)] evidence: IDA
            GeneID:55683 -> Molecular function: GO:0043996 [histone acetyltransferase activity (H4-K8 specific)] evidence: IDA
            GeneID:55683 -> Molecular function: GO:0046972 [histone acetyltransferase activity (H4-K16 specific)] evidence: IDA
            GeneID:55683 -> Biological process: GO:0043981 [histone H4-K5 acetylation] evidence: IDA
            GeneID:55683 -> Biological process: GO:0043982 [histone H4-K8 acetylation] evidence: IDA
            GeneID:55683 -> Biological process: GO:0043984 [histone H4-K16 acetylation] evidence: IDA
            GeneID:55683 -> Cellular component: GO:0000123 [histone acetyltransferase complex] evidence: IDA

by @meso_cacase at DBCLS
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