GGRNA Home | Help | Advanced search

2019-03-23 03:29:54, GGRNA : RefSeq release 60 (20130726)

LOCUS       NR_038947               2083 bp    RNA     linear   PRI 16-JUL-2013
DEFINITION  Homo sapiens uncharacterized LOC100506025 (LOC100506025),
            transcript variant 2, non-coding RNA.
ACCESSION   NR_038947
VERSION     NR_038947.1  GI:336595213
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
            Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
            B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
            Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
            GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
            Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
            Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
            SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
            Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
            Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
            Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
            Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
            Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
            Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
            Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DB462496.1, BX115602.1 and BC034288.1.
            
            Transcript Variant: This variant (2) lacks an exon, includes an
            alternate exon and uses an alternate splice site, compared to
            variant 1.
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-62                DB462496.1         4-65
            63-675              BX115602.1         5-617
            676-2083            BC034288.1         850-2257
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Homo sapiens"
                     /mol_type="transcribed RNA"
                     /db_xref="taxon:9606"
                     /chromosome="7"
                     /map="7"
     gene            1..2083
                     /gene="LOC100506025"
                     /note="uncharacterized LOC100506025"
                     /db_xref="GeneID:100506025"
     misc_RNA        1..2083
                     /gene="LOC100506025"
                     /product="uncharacterized LOC100506025, transcript variant
                     2"
                     /db_xref="GeneID:100506025"
     exon            1..118
                     /gene="LOC100506025"
                     /inference="alignment:Splign:1.39.8"
     variation       11
                     /gene="LOC100506025"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:190844192"
     exon            119..196
                     /gene="LOC100506025"
                     /inference="alignment:Splign:1.39.8"
     variation       123
                     /gene="LOC100506025"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:146284032"
     exon            197..240
                     /gene="LOC100506025"
                     /inference="alignment:Splign:1.39.8"
     variation       209
                     /gene="LOC100506025"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:142348903"
     exon            241..325
                     /gene="LOC100506025"
                     /inference="alignment:Splign:1.39.8"
     variation       280
                     /gene="LOC100506025"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:138058220"
     exon            326..2073
                     /gene="LOC100506025"
                     /inference="alignment:Splign:1.39.8"
     variation       427
                     /gene="LOC100506025"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:1295136"
     variation       428
                     /gene="LOC100506025"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:370087847"
     variation       500
                     /gene="LOC100506025"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:141917557"
     variation       700
                     /gene="LOC100506025"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:190856604"
     variation       729
                     /gene="LOC100506025"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:139920241"
     variation       770
                     /gene="LOC100506025"
                     /replace=""
                     /replace="a"
                     /db_xref="dbSNP:35621017"
     variation       779
                     /gene="LOC100506025"
                     /replace=""
                     /replace="aa"
                     /db_xref="dbSNP:79288522"
     variation       873
                     /gene="LOC100506025"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:57031097"
     variation       1006
                     /gene="LOC100506025"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:183191945"
     variation       1022
                     /gene="LOC100506025"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:73294861"
     variation       1046
                     /gene="LOC100506025"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:115267306"
     variation       1047
                     /gene="LOC100506025"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:186502100"
     variation       1406
                     /gene="LOC100506025"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:190468371"
     variation       1530
                     /gene="LOC100506025"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:183059327"
     variation       1537
                     /gene="LOC100506025"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:1295135"
     variation       1634
                     /gene="LOC100506025"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:147922811"
     variation       1692
                     /gene="LOC100506025"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:370926880"
     variation       1801
                     /gene="LOC100506025"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374301819"
     variation       1839..1840
                     /gene="LOC100506025"
                     /replace=""
                     /replace="a"
                     /db_xref="dbSNP:375123344"
     variation       1903..1904
                     /gene="LOC100506025"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:35771284"
     variation       1904
                     /gene="LOC100506025"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:6951432"
     variation       1953
                     /gene="LOC100506025"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:187393233"
     variation       2052..2053
                     /gene="LOC100506025"
                     /replace=""
                     /replace="a"
                     /db_xref="dbSNP:34229743"
ORIGIN      


tgtttccagacactctgtgcaaagaacagaggcaagcctccagccaggagctcatgaaatcatgaactgaggcctcagtgcaatagctcatgaggaaatgaattatttcaacagccagggttgctctgaagactaaagccctgggatcattcattttaaaagaaaagaacggtgactcatcatttcaagcttttcattctggaagttggaagtacaagatcagattgccagcatcatcagatttgatatcaaagtaatgtcaagtgcttctgacccactgcattaaacgtgtgctgagcagttggtggtagaagacattattgtgaaggctgctcaccaccaatttcatcactgttgctaactccagctcatctaatctctgcaacatctgctaccagcaccttctcttgcctccttttgtgaacatagttttttcttctggttagaaaatcagttcgaacttcttgagttttgtgttttaaactcttctcaactgttccgatgattgatggatggcccagaggcgacctctttatctccagcaacatatttggctgttggcccggtagagaggtactccagaagcttgctggttcatcatgctctcatctttaaccacaactatttatctgactccttccatctccacagcactgtgtgagggatcagtgataagagacggtgaaagacatgcgcaaatggataaataataagcaggatatgtagaatgacacaacaattgatgagtaatttaggagatccaataactaaaaaaaaaaagactggggacaagttcatggaaagagtaatcaactaagccttataacataaaattgacaaatagagaaggcatgcaatccagtagaatagagtgcaaaagaggtagaagactaatcgtttcaagacatgttgagccacaacagcaataacattgtgacaaaaaacgtcggtgtagactgcagaagatcttcaatgacggatcaagctgtatagacttttttttaccctcatatactgaatagtcatttaaggtatacagtgccaacgtaagagagaaaggtaaactttttttaacacaagttgtaggccttggaaagaagttttccagtaacaagataacacgataatgtactgtggttataagctcaaagtggtatatttgattcagtgttcccagaaccaccaaaaccttggaaccattgtttagctaaagctactagaacaacagaataacctactctgtggcattgtaaagtaaaattatactacacacaaatacttgacataaaatacatttccaaactcaattattagggataacataagcacaaaatgatgctttgcaaacatcatgtatcctataactggagaaaaaaaattaatgacatgaagtgaaatgactgagttctgaagctacatctcaatttaaatagcataagcaatttagtatacaacattcttcaaaatcaattgttgaaggttaactataatctacatacaaaaacaactttgtcaactttttgtacggattttccttctaaacatatttactttatgtgtaaaatcaaaaaatttcctgagttaaaggctaagacttgactttatgaatacatgcccaaaaattggtggtggctggtttctgtttttattttgtaagcttagtataatggttgtccagaacttgtaagcaatgacctcatttctaagcggacaagatgcaaaagaccatttttacagattaaccatctggttcctttaggaagagtaatatttcaacaggttcctgtatttcaagaatataaataattaaaaagatgaagatatgtgaaatacacaaagaaaaaaatagagaaaatagcatttaaagcaaattatcctagctccctcaattaatattttaaaaccatgacaatcagttattaatataaattgttaattttatttaatacaacatcaatataattcataccatcttcttcaactaggtggtctatcattttggagtttctttccacctctggagaattgctcaggaaatctggctaacataccaaataaatcaaatggatttaaaaaaaaaaaa
//

Annotations:



by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 2.1 Japan License.