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2024-04-24 19:17:34, GGRNA : RefSeq release 60 (20130726)
LOCUS NR_034115 3082 bp RNA linear PRI 16-JUL-2013
DEFINITION Homo sapiens STXBP5 antisense RNA 1 (STXBP5-AS1), non-coding RNA.
ACCESSION NR_034115
VERSION NR_034115.1 GI:300796161
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3082)
AUTHORS Kimura,K., Wakamatsu,A., Suzuki,Y., Ota,T., Nishikawa,T.,
Yamashita,R., Yamamoto,J., Sekine,M., Tsuritani,K., Wakaguri,H.,
Ishii,S., Sugiyama,T., Saito,K., Isono,Y., Irie,R., Kushida,N.,
Yoneyama,T., Otsuka,R., Kanda,K., Yokoi,T., Kondo,H., Wagatsuma,M.,
Murakawa,K., Ishida,S., Ishibashi,T., Takahashi-Fujii,A.,
Tanase,T., Nagai,K., Kikuchi,H., Nakai,K., Isogai,T. and Sugano,S.
TITLE Diversification of transcriptional modulation: large-scale
identification and characterization of putative alternative
promoters of human genes
JOURNAL Genome Res. 16 (1), 55-65 (2006)
PUBMED 16344560
REFERENCE 2 (bases 1 to 3082)
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S., Watanabe,S.,
Yosida,M., Hotuta,T., Kusano,J., Kanehori,K., Takahashi-Fujii,A.,
Hara,H., Tanase,T.O., Nomura,Y., Togiya,S., Komai,F., Hara,R.,
Takeuchi,K., Arita,M., Imose,N., Musashino,K., Yuuki,H., Oshima,A.,
Sasaki,N., Aotsuka,S., Yoshikawa,Y., Matsunawa,H., Ichihara,T.,
Shiohata,N., Sano,S., Moriya,S., Momiyama,H., Satoh,N., Takami,S.,
Terashima,Y., Suzuki,O., Nakagawa,S., Senoh,A., Mizoguchi,H.,
Goto,Y., Shimizu,F., Wakebe,H., Hishigaki,H., Watanabe,T.,
Sugiyama,A., Takemoto,M., Kawakami,B., Yamazaki,M., Watanabe,K.,
Kumagai,A., Itakura,S., Fukuzumi,Y., Fujimori,Y., Komiyama,M.,
Tashiro,H., Tanigami,A., Fujiwara,T., Ono,T., Yamada,K., Fujii,Y.,
Ozaki,K., Hirao,M., Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N.,
Inagaki,H., Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T.,
Noguchi,S., Itoh,T., Shigeta,K., Senba,T., Matsumura,K.,
Nakajima,Y., Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T.,
Oyama,M., Hata,H., Watanabe,M., Komatsu,T., Mizushima-Sugano,J.,
Satoh,T., Shirai,Y., Takahashi,Y., Nakagawa,K., Okumura,K.,
Nagase,T., Nomura,N., Kikuchi,H., Masuho,Y., Yamashita,R.,
Nakai,K., Yada,T., Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36 (1), 40-45 (2004)
PUBMED 14702039
REFERENCE 3 (bases 1 to 3082)
AUTHORS Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AK091594.1, BC044307.1, BQ269903.1, DB318281.1 and BU078216.1.
##Evidence-Data-START##
Transcript exon combination :: BC044307.1 [ECO:0000332]
RNAseq introns :: mixed/partial sample support
ERS025081, ERS025084 [ECO:0000350]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-121 AK091594.1 1-121
122-425 BC044307.1 53-356
426-426 AK091594.1 497-497
427-1895 BC044307.1 358-1826
1896-2300 BQ269903.1 193-597
2301-2560 DB318281.1 1-260 c
2561-3082 BU078216.1 94-615
FEATURES Location/Qualifiers
source 1..3082
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="6"
/map="6q24.3"
gene 1..3082
/gene="STXBP5-AS1"
/note="STXBP5 antisense RNA 1"
/db_xref="GeneID:729178"
/db_xref="HGNC:44183"
misc_RNA 1..3082
/gene="STXBP5-AS1"
/product="STXBP5 antisense RNA 1"
/db_xref="GeneID:729178"
/db_xref="HGNC:44183"
exon 1..202
/gene="STXBP5-AS1"
/inference="alignment:Splign:1.39.8"
variation complement(2)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:201462341"
variation complement(88)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:3811106"
variation complement(96)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:11963039"
variation complement(117)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:376288379"
exon 203..336
/gene="STXBP5-AS1"
/inference="alignment:Splign:1.39.8"
variation complement(255)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:200624307"
exon 337..391
/gene="STXBP5-AS1"
/inference="alignment:Splign:1.39.8"
variation complement(374)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:373852391"
exon 392..452
/gene="STXBP5-AS1"
/inference="alignment:Splign:1.39.8"
variation complement(418)
/gene="STXBP5-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:371214735"
variation complement(426)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:6917323"
variation complement(441)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:146901246"
exon 453..495
/gene="STXBP5-AS1"
/inference="alignment:Splign:1.39.8"
exon 496..598
/gene="STXBP5-AS1"
/inference="alignment:Splign:1.39.8"
variation complement(505)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:145099412"
exon 599..624
/gene="STXBP5-AS1"
/inference="alignment:Splign:1.39.8"
exon 625..750
/gene="STXBP5-AS1"
/inference="alignment:Splign:1.39.8"
variation complement(694)
/gene="STXBP5-AS1"
/replace="a"
/replace="t"
/db_xref="dbSNP:59529717"
variation complement(736)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:17076383"
exon 751..1257
/gene="STXBP5-AS1"
/inference="alignment:Splign:1.39.8"
variation complement(787)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:79456185"
variation complement(799)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:62434424"
variation complement(1007)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:186506191"
variation complement(1008..1009)
/gene="STXBP5-AS1"
/replace=""
/replace="g"
/db_xref="dbSNP:35141692"
variation complement(1034)
/gene="STXBP5-AS1"
/replace=""
/replace="t"
/db_xref="dbSNP:61594403"
variation complement(1107)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:56338114"
variation complement(1152)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:371662652"
variation complement(1159)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:143791777"
variation complement(1173)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:138404993"
variation complement(1181)
/gene="STXBP5-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:180691298"
variation complement(1184)
/gene="STXBP5-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:6929822"
variation complement(1186)
/gene="STXBP5-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:371956769"
variation complement(1232)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:9497649"
exon 1258..1651
/gene="STXBP5-AS1"
/inference="alignment:Splign:1.39.8"
variation complement(1286)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:141133461"
variation complement(1347)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:187513413"
variation complement(1405)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:183141097"
variation complement(1434)
/gene="STXBP5-AS1"
/replace="a"
/replace="t"
/db_xref="dbSNP:7770567"
variation complement(1463)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:191838007"
variation complement(1468)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:376560870"
variation complement(1479)
/gene="STXBP5-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:12206612"
variation complement(1500)
/gene="STXBP5-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:148225479"
variation complement(1568)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:145896102"
variation complement(1581)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:187505197"
exon 1652..3073
/gene="STXBP5-AS1"
/inference="alignment:Splign:1.39.8"
variation complement(1682)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:75389761"
variation complement(1756)
/gene="STXBP5-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:12213086"
variation complement(1795)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:377629419"
variation complement(1803)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:151032395"
variation complement(1843)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:192172614"
variation complement(1898)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:373969459"
variation complement(1942)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:369161847"
variation complement(1943)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:186766943"
variation complement(1955)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:41285877"
variation complement(2016)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:77361245"
variation complement(2017)
/gene="STXBP5-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:144339141"
variation complement(2067)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:139620990"
variation complement(2144)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:12664782"
variation complement(2158)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:183970447"
variation complement(2189)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:191708154"
variation complement(2212..2213)
/gene="STXBP5-AS1"
/replace=""
/replace="a"
/db_xref="dbSNP:34145370"
variation complement(2235)
/gene="STXBP5-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:369915272"
variation complement(2357)
/gene="STXBP5-AS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:17076360"
variation complement(2401)
/gene="STXBP5-AS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:375761134"
variation complement(2450)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:143760539"
variation complement(2540)
/gene="STXBP5-AS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:115257064"
variation complement(2578..2579)
/gene="STXBP5-AS1"
/replace=""
/replace="a"
/db_xref="dbSNP:5880690"
variation complement(2579..2580)
/gene="STXBP5-AS1"
/replace=""
/replace="a"
/db_xref="dbSNP:372187822"
variation complement(2611)
/gene="STXBP5-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:368417933"
variation complement(2636)
/gene="STXBP5-AS1"
/replace="g"
/replace="t"
/db_xref="dbSNP:62434421"
variation complement(2736)
/gene="STXBP5-AS1"
/replace="a"
/replace="t"
/db_xref="dbSNP:367943415"
variation complement(2777)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:148802118"
variation complement(2797)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:9373512"
variation complement(2983)
/gene="STXBP5-AS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:144374296"
variation complement(3014..3015)
/gene="STXBP5-AS1"
/replace=""
/replace="c"
/db_xref="dbSNP:35487516"
ORIGIN
gctgctgctgttgctgctgcgacgccgaggacgagccggcggtcaggccgtccagcaccttcctgatgttgaatttcctcatggtctcggaggggctcccccgcagcccgggaggggaggcacagggggtccccgggcgggggagaccacccggggccgaaggcagcttcgaccgcggaaacggaggagtgggagtgtgaggagaaatatgcaatgatgacatttccaagaagtgatggcatctggcgctaaggacaaagaatgggattttgccacagggatcttattctcccacatgttctgtctgaaggagaaagttatctgaggccttatatgatgcaaaactttggactcaaagaaattaaatcacttgcccaaggttacatagctgcccctggcaaacaccattctactttccgtctctatgaatttgactactcgaagtacctcatgtgaaatgttggtgccaaatgaacttttctggttcttctgaatatgccactgttgctggagaaatgtcactgctagagaacagaagactattattccaaagggtatttgagactgactgaatcaggtctggaacattattgaaatgagacccacaaaagaagagatactgaggtggtgaccagatggatataaacgggctgtggaaaaagagaatgcatggccaaaaatggtggtgctctctgtccaaaaactgaggccctatgaccatgaatgaagccagagggcaggtaggaatagatcatttgctccagaagaagctggttgccatgtcttgaggacagtaaaccctctggggaggttcctgtggtaaggaacaagggctcctggcaatagcctctgagtgagccaccttgaaaatggattgtccagccccagtcaagctttcagatgactgtagctcctgccaatgtcttcaccacaacctcatgagatcccaagctacaaccactcagttaagttatgccaaaattcctgattcacagaaattgacatacaggagaggtcacagttaagatcttgatgttctatcttgacccataatataggaacttcatcttttgggaagcaccagggagagctgcctgtgcctggcagaagctgcccatgccccactgataccccacagtacttcctgttctgcttagtactcctgcttctttctacaaacaactgtgattctctacctgggagcttcctctggccacaggagcctgctcacctgattgggacaccctagcagtactggctcatagatggaagggacttgccttgtcgctgatgagactttcgacttggacttttgagtcaatgctggaatgagttaagactttggggaactgttggaagggtgtgattgtgttttgaattgtgaggacatgagattttgaagaggctaatggcagcgtccccacctaaatctcttcttgaattgtagttcccataatccccacgtgtcgtggggtggagccggtggagataattgaatcatgggaacactttcccccatgctgttattgtgattgtgaattctcacgagatctgatggttgtataaacgccttccctcttcgctgggcactcatttttctccttcctgccaccatgtgaagaaggatatgcttgcttcttgtgccatgattacaagaacacactcagaaattttctcaacacagtttctatgcagagaagagatgtgggacagatttgaactgctgtcatatttgtatgaacccaagacattttccaagaccaagagggataaagacagcaatttctatgactggcattttacgtgcatgcactgtttccaagtgttcttgtgttctgtgccttaaacattctgtgttgcaactttatgaattgaattaaagataatcccaagcccccaattgtctcaaaaagtgaaaaagtaaatgttatagaaagaaaagcgggaaaaactttaagcatgaaataaaagatgggttgtgataaaagaggactgaagaaggaaaaggaatgaaaggttctgccatccttcatggcagcccactccacttggtatgagatactgctcccttggctgaaagttaactgctgtactccctccactttctataaatgactccctgtgcctttccttcaccacacaactcacactctcttccttcctagtgagtccactaaggcttcactgcattattacatttatttcatttaggaaaaactgactttattttccttcaaattgttttttattgtttatatgagcttggttttattgtcattctatttttctccatgaaaatagagaaaaatagggtcgaaaggttaggttgggtggaaaggaattatattttttctcactaaaattgatgtaaatatcgttttcaattgaatgattttacacagtggcacagtttcaggtatgttgctaagcaggaaagttgttaaccaaagcatgaatgtattaaggagatgtatgcagaatgacatgcaaggttatctatgattgctgagtgagaaagagcaagttgctgagtattatataagtatgatctcacttttgtaaaaaaaaaaaaaaaaaaaggcctggactgatctgaaatgaccctattaataacaattatgtccaggtctgtattgcatacttgtcattcattacaggatcttgagacacaatgcaaaggatcacatcgcagctctgtaacttgttaactataagattttgagtaacataacaccttactccttaaaattgcttaaaaaaaatctgaacatcaggaatattctacttcacagggtcgttgtgataattaaatgtagtaatcaatgacaatagtgccagatacagtagatagcctacactttgcagctactatttctatctatcatccatctattaatatatatcatctatctttaacttatcatctatcttgttccagttttttaaaatgaacatgtattaactttgtaaaaaattaaggctataagatgtgctgagcttttggaatagattttcctgtactatatatgactgccagtgggagaatttgaataaatgtgtaaatttgactaaaaaaaaaaaa
//
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@meso_cacase at
DBCLS
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