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2024-04-20 09:10:01, GGRNA : RefSeq release 60 (20130726)
LOCUS NR_029385 2440 bp RNA linear PRI 16-JUL-2013
DEFINITION Homo sapiens OTX2 antisense RNA 1 (head to head) (OTX2-AS1),
non-coding RNA.
ACCESSION NR_029385
VERSION NR_029385.1 GI:261245011
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2440)
AUTHORS Alfano,G., Vitiello,C., Caccioppoli,C., Caramico,T., Carola,A.,
Szego,M.J., McInnes,R.R., Auricchio,A. and Banfi,S.
TITLE Natural antisense transcripts associated with genes involved in eye
development
JOURNAL Hum. Mol. Genet. 14 (7), 913-923 (2005)
PUBMED 15703187
COMMENT PREDICTED REFSEQ: This record has not been reviewed and the
function is unknown. The reference sequence was derived from
BC041486.2 and AL161757.4.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-103 BC041486.2 1-103
104-104 AL161757.4 52291-52291 c
105-1734 BC041486.2 104-1733
1735-2440 BC041486.2 1742-2447
FEATURES Location/Qualifiers
source 1..2440
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="14"
/map="14"
gene 1..2440
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/note="OTX2 antisense RNA 1 (head to head)"
/db_xref="GeneID:100309464"
/db_xref="HGNC:43906"
misc_RNA 1..2440
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/product="OTX2 antisense RNA 1 (head to head)"
/db_xref="GeneID:100309464"
/db_xref="HGNC:43906"
exon 1..287
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/inference="alignment:Splign:1.39.8"
variation 35
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:142674291"
variation 93
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:201605583"
variation 93
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="g"
/db_xref="dbSNP:33968082"
variation 99
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:1958531"
variation 105
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="t"
/db_xref="dbSNP:375495685"
variation 146
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:61997667"
exon 288..396
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/inference="alignment:Splign:1.39.8"
variation 329
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:375247895"
variation 362
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:149717521"
variation 375
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:181335837"
variation 387
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:207474870"
exon 397..474
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/inference="alignment:Splign:1.39.8"
exon 475..2427
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/inference="alignment:Splign:1.39.8"
variation 486
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:138383315"
variation 488
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:143882017"
variation 507
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:147239115"
variation 521
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:74563914"
variation 772
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="t"
/db_xref="dbSNP:201877910"
variation 855
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:2146859"
variation 905
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:148806200"
variation 920
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:141583823"
variation 1000
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:189299963"
variation 1028
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:181975536"
variation 1138
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="c"
/db_xref="dbSNP:377615000"
variation 1227..1230
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="ttct"
/db_xref="dbSNP:146687951"
variation 1229..1232
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="cttt"
/db_xref="dbSNP:78522986"
variation 1292
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:75931450"
variation 1311
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:375349222"
variation 1693
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:116627134"
variation 1699..1702
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="cttc"
/db_xref="dbSNP:376225864"
variation 1705..1707
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="cttccttc"
/db_xref="dbSNP:140270484"
variation 1734..1735
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:862070"
variation 1734..1735
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="cttccttc"
/db_xref="dbSNP:71104526"
variation 1735
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:199531630"
variation 1739
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:186352723"
variation 1743
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:12893311"
variation 1750
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:12894513"
variation 1766..1769
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="tttc"
/db_xref="dbSNP:150682540"
variation 1769..1772
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="cttt"
/db_xref="dbSNP:140145663"
variation 1773..1774
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="cttccttcctttctttctctctctctt"
/replace="tctctctctttttctttc"
/db_xref="dbSNP:71410654"
variation 1773
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:12893327"
variation 1781..1782
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="t"
/db_xref="dbSNP:200823721"
variation 1785
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:143047901"
variation 1786
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:199660427"
variation 1789
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="cttttctttctttctctctctctcttt"
/replace="tctttctttctctctctttctctctcc"
/db_xref="dbSNP:71410655"
variation 1796..1797
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="tctc"
/db_xref="dbSNP:144697204"
variation 1796
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:28595791"
variation 1800
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:850267"
variation 1802
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:28535561"
variation 1803..1806
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="tctt"
/db_xref="dbSNP:139034297"
variation 1806..1809
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="ttct"
/db_xref="dbSNP:368248849"
variation 1806
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:850268"
variation 1808..1815
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="ctctctcc"
/db_xref="dbSNP:199530016"
variation 1814
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:12893352"
variation 1815..1816
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="cc"
/replace="tt"
/db_xref="dbSNP:369494309"
variation 1815
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:12893354"
variation 1840..1841
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="tctt"
/db_xref="dbSNP:143164523"
variation 1841..1842
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="tctt"
/db_xref="dbSNP:371382384"
variation 1842..1849
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="ctttcttt"
/db_xref="dbSNP:372497236"
variation 1957
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:190758648"
variation 1979..1980
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="c"
/db_xref="dbSNP:35531184"
variation 1984
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="g"
/db_xref="dbSNP:144391320"
variation 2029
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="a"
/replace="t"
/db_xref="dbSNP:7140833"
variation 2034
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace=""
/replace="t"
/db_xref="dbSNP:33939228"
variation 2279
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="g"
/db_xref="dbSNP:709975"
variation 2361
/gene="OTX2-AS1"
/gene_synonym="OTX2OS1"
/replace="c"
/replace="t"
/db_xref="dbSNP:709976"
ORIGIN
agcaatgtgctgaagctcttaaaagattggatctgagagagagagacagagaggagaaagagaactagagacagagagaggcagacaaggaaggggggggggggtgaaagactttctttttctttctagaggaattctgcccagactctgcagcagttggtagcaggcaagctttctcctgggtgtcgccttgaaaagttgcaaaattgctcttcacctgtaagaacatgctctttatcttccagtctcttcttgtcaatttggaaattgcagactgcccggctcaggctgaagggcagtggcacaatctcggctcaccgaagcctccacctcccagattcaagcgattctcatgcctcagcttcccaagtagctgggattacaggcttgtcaaagaaaatttcttaatgaaagcgatgatgatgtcgaccttaacctccagaatgaagatacttcaggacttagtctgagaaggctaccaagtcatgatggagaaaaacgtgaaaccactgattcagttcattgcaaattcattctaccaaaccttacctggctcttgttgctgcttggtagtccttttattaatctcttggagactcactgattagtttcctccattgatcatctaaaagcttttttcatatttttgaaactcactgtttgatctccccttccccttgtactcggaagatgatcttgctttctgctttactgagaagttcaaggttatctgcaatctccttcaacttttcactcctatcctattttctattttccttcatctcttgcttcctctgctcttttgttttagggaaagaaacagtccctttatttctaggttgaactcaacttctgcaggacttttgtctgtaaattgtacttctttttttttgagacagagtctcgctctgtcacccaggctggagtgcagtggcatgatctcaggtcactgcaacctctacctcccaggttaaagcaattctcctgcctcagcttcctgagtagctgggattacaggcgccactcccggctaaatttttgtatttttagtagagacggggtttggctatgttggccaggctggtctcaaattcctgacttcaggtgatgcacccacctccgcccgcctcggcctcccaaagtgctggcattacagatgtgagccaccgtgcccagctaaattgtaccttctgttccttaaaaatcctaaaatcccttgttgtaggttctttaattttgagaaagtaataaataaagcacagagattaataagacaaatatgcttgtttgcaaaacccagaattgactgttaatattatcatacactggcttatcctttttctaataaaaaagtttcagataaagttgaagttccccttgacctaccttttcagtcctgttgcctgcattccctccctcaaagcaaccctatataatatcggcatgtattctttgaggtcattaaagaatacatttatgtgcccatatacataataatgtgtgtgattgtttagtgggtaatttaagaatttacatatttaatattcacagtctattttgtgatgtttctgtcttctatccatgctagtatatgtagagctatttgtaagttccctgagggcagggactttgtcttgctcattgctgaatctccagcacctagaatagcatttggcatatagcaaacattcaatctttcttccttccttccttccttccttccttccttccttctttccttccttcctttctttctctctctctttttctttctttctttctttcttttctttctttctctctctttctctctccctctctccctctctcctttcctttctctttctttctttctttattcttcctttttttttgttgacaggatctcactctgtctcccaggctggagtgcattggcaccatcactgctcactgcaacctcctccttccaggctcaagcaatcctcccatttcagcctcccaagtggctgggactacaggagtgcaccaccttgcctggataattttttgtattttttttttggagagacagggtttcagcatgttgcccagactggtctcaaactcctttgctcaagtgttcctcctgccttggcctcccaaagtgctgggactatagatgtgagccactatgccagccaatatatgtatatatttcttaagtgagttaatatcattcatttttaactgctgtgtagtaatcaactgtatgaatattccacatatcacattttatttattcattctcccaccagtagacaatgtgtgctttcctaatttccatgcttcttattacaaatattgttgtggaacagccttgtacaagtctcctgtgcctatgtttgagttgtatcagagttggaattgctgcttgtcacaaataaactttaaactagatttagccaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
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