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2024-04-20 02:11:04, GGRNA : RefSeq release 60 (20130726)
LOCUS NR_024608 2175 bp RNA linear PRI 16-JUL-2013
DEFINITION Homo sapiens X-ray repair complementing defective repair in Chinese
hamster cells 6 pseudogene 5 (XRCC6P5), non-coding RNA.
ACCESSION NR_024608 XM_001716243 XM_001726957 XM_001726964
VERSION NR_024608.1 GI:218749869
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2175)
AUTHORS Sakano,S., Hinoda,Y., Okayama,N., Kawai,Y., Korenaga,Y., Eguchi,S.,
Nagao,K., Ohmi,C. and Naito,K.
TITLE The association of DNA repair gene polymorphisms with the
development and progression of renal cell carcinoma
JOURNAL Ann. Oncol. 18 (11), 1817-1827 (2007)
PUBMED 17712032
REMARK GeneRIF: The association between DNA repair gene polymorphism and
the genetic susceptibility and progression of renal cell carcinoma
are not specific.
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL390027.11, AL137843.4, AL590293.3 and AL022148.1.
Sequence Note: The RefSeq transcript was derived from the reference
genome assembly. The genomic coordinates were determined from
alignments.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-451 AL390027.11 176887-177337 c
452-527 AL390027.11 85714-85789 c
528-535 AL390027.11 23344-23351 c
536-547 AL137843.4 3724-3735
548-563 AL137843.4 25697-25712
564-572 AL137843.4 32468-32476
573-860 AL137843.4 34922-35209
861-1867 AL137843.4 35466-36472
1868-1963 AL137843.4 99311-99406
1964-2072 AL590293.3 50242-50350 c
2073-2175 AL022148.1 31017-31119 c
FEATURES Location/Qualifiers
source 1..2175
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="X"
/map="Xq22.1"
gene 1..2175
/gene="XRCC6P5"
/note="X-ray repair complementing defective repair in
Chinese hamster cells 6 pseudogene 5"
/pseudo
/db_xref="GeneID:442459"
/db_xref="HGNC:45187"
misc_RNA 1..2175
/gene="XRCC6P5"
/product="X-ray repair complementing defective repair in
Chinese hamster cells 6 pseudogene 5"
/pseudo
/db_xref="GeneID:442459"
/db_xref="HGNC:45187"
exon 1..451
/gene="XRCC6P5"
/inference="alignment:Splign:1.39.8"
/pseudo
variation complement(17..18)
/gene="XRCC6P5"
/replace=""
/replace="g"
/db_xref="dbSNP:35143815"
variation complement(58)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:2884584"
variation complement(69)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:190706264"
variation complement(79)
/gene="XRCC6P5"
/replace="g"
/replace="t"
/db_xref="dbSNP:113728054"
variation complement(107)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/replace="t"
/db_xref="dbSNP:185412819"
variation complement(144)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:4026619"
variation complement(178)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:2884583"
variation complement(223..224)
/gene="XRCC6P5"
/replace=""
/replace="cc"
/db_xref="dbSNP:3050846"
variation complement(228)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:2358923"
variation complement(231)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:2358922"
variation complement(287)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:369383201"
variation complement(355)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:192722436"
variation complement(362)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:2884582"
variation complement(375)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:4026618"
variation complement(394)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:4026617"
variation complement(401)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:2884581"
variation complement(408..413)
/gene="XRCC6P5"
/replace=""
/replace="gtgcct"
/db_xref="dbSNP:4026616"
variation complement(419)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:16983262"
variation complement(425..427)
/gene="XRCC6P5"
/replace=""
/replace="cgc"
/db_xref="dbSNP:4026615"
variation complement(451)
/gene="XRCC6P5"
/replace="g"
/replace="t"
/db_xref="dbSNP:2884580"
exon 452..527
/gene="XRCC6P5"
/inference="alignment:Splign:1.39.8"
/pseudo
exon 528..535
/gene="XRCC6P5"
/inference="alignment:Splign:1.39.8"
/pseudo
exon 536..547
/gene="XRCC6P5"
/inference="alignment:Splign:1.39.8"
/pseudo
exon 548..563
/gene="XRCC6P5"
/inference="alignment:Splign:1.39.8"
/pseudo
variation complement(550)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:377567514"
exon 564..572
/gene="XRCC6P5"
/inference="alignment:Splign:1.39.8"
/pseudo
variation complement(571)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:146583915"
exon 573..860
/gene="XRCC6P5"
/inference="alignment:Splign:1.39.8"
/pseudo
variation complement(730)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:376894952"
exon 861..1867
/gene="XRCC6P5"
/inference="alignment:Splign:1.39.8"
/pseudo
variation complement(869..887)
/gene="XRCC6P5"
/replace=""
/replace="ttcactttgaggaatccag"
/db_xref="dbSNP:199712912"
variation complement(889)
/gene="XRCC6P5"
/replace="a"
/replace="t"
/db_xref="dbSNP:143875649"
variation complement(922)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:113231409"
variation complement(1089)
/gene="XRCC6P5"
/replace="a"
/replace="t"
/db_xref="dbSNP:192639669"
variation complement(1119)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:188110507"
variation complement(1129)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:376455082"
variation complement(1130)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:138097687"
variation complement(1163)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:150342783"
variation complement(1172)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:73560306"
variation complement(1204)
/gene="XRCC6P5"
/replace="a"
/replace="c"
/db_xref="dbSNP:183324267"
variation complement(1262)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:113441076"
variation complement(1281)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:191065655"
variation complement(1285)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:187365141"
variation complement(1299)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:182732259"
variation complement(1353)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:375165042"
variation complement(1400..1401)
/gene="XRCC6P5"
/replace=""
/replace="c"
/db_xref="dbSNP:35871454"
variation complement(1477)
/gene="XRCC6P5"
/replace="a"
/replace="c"
/db_xref="dbSNP:191040188"
variation complement(1657)
/gene="XRCC6P5"
/replace="a"
/replace="t"
/db_xref="dbSNP:145685469"
variation complement(1678)
/gene="XRCC6P5"
/replace="c"
/replace="g"
/db_xref="dbSNP:186180467"
exon 1868..1963
/gene="XRCC6P5"
/inference="alignment:Splign:1.39.8"
/pseudo
variation complement(1868)
/gene="XRCC6P5"
/replace="a"
/replace="g"
/db_xref="dbSNP:140289709"
variation complement(1886)
/gene="XRCC6P5"
/replace="c"
/replace="t"
/db_xref="dbSNP:372248971"
variation complement(1916)
/gene="XRCC6P5"
/replace="g"
/replace="t"
/db_xref="dbSNP:113353198"
exon 1964..2072
/gene="XRCC6P5"
/inference="alignment:Splign:1.39.8"
/pseudo
variation complement(2002)
/gene="XRCC6P5"
/replace="a"
/replace="c"
/db_xref="dbSNP:187105918"
exon 2073..2175
/gene="XRCC6P5"
/inference="alignment:Splign:1.39.8"
/pseudo
variation complement(2149)
/gene="XRCC6P5"
/replace="a"
/replace="c"
/db_xref="dbSNP:11797236"
ORIGIN
atggtggaaccatggggacttgggggtggggcagaggtgggaacatttgtatcagttaagtcagcttcgtggctccctgtggagccagggctgagccttgtgacgcgcactcgccaattagagattgatcagccagcagtcaaatgcattctccagtccttgcaagaaggatcagccttttctgtgccagcctcgatcgccttgtgctttggtctctttttctcccctgcttggatcctgcctcgcgcgggccgtcctgttgctgagactcggggtaccgttctgctgacccagctccctttagtcacgtttgcttggctctggtaccaaatagttgggattaccgaagagtccccttcctcgcgtgtcagcacagatgctgtgactgccacccgcgtccccgtcaagtgcctgtgcccgagctcgccgccgccgtgtgtgctgcgctgatagtttccagttgttctttctgggtgatggtgatatagatgtacagtactacatggcactaatatataggtaagtttgatgttgattttgatggacagtacttcatgccccttatacttaggggctatgtttgaatctcagagcgaaggtgagttgactccttttgacatgagcatccagtgtatccaaagtgtgtacatgagtaagatcataagcagtgatcgagatctttatgatactgagaaagacaaaaattcagtgaattttaaaaatatttacgtcttacaggagttggaaaatccaggtgcaaaacaaattctaaagcttgaccagtttaaggggcagcagggacaaaaatgtttcgaagacctgatgggccatggatctgactactcattcagtgaagttctgaatccagttcactttgaggaatccagcaatctagaagacctgttgcagaaggttcgtgccaaggagaccaggaaatgggcactcagcaggttaaagctgaagctcaacaaagacatagtgatctctgtgggcatttacagtctcgtccagaaggctctcaagcctccttcaataaaactctatcggaaaacaaatgaaccagtgaaaaccaagtcccggaaatttaatattaataccggcagtttgcttctgcctagcgataccaagcggtctcagatctatgggagtcatcagattatactggagaaagaggaaacagaagagctaaaatggtttgatgaaccagctttgatgctcatggttttcaagcccttggtaatgctgaaggagcaccattacccgaggccctccttgttcacgtaccctgaggagtcgccggtgaatgggagttcaaccctgttcagtgctctgctcattaagtgtctggagaaggtggtcatagcattgtgcagatacacaccccgcaggaacatccccccttatttggtggctttggtgtcacaggaagaggagttggatgaccagaaaattcaggtgactactccaggtttccagctggtctttttaccctttgctgatgataaaaggaaggtgccctttactgaaaaagtcatggcaactccagagcaggtggacaacatgaaggctatcattcagaagctctgcttcacatacagaagtgacagctttgagaaccccgtgctgcagcagcacttcgggaacctggagcccttgatcttgtatttgatggaggaacaagcagtggaccttatattacccaaggttgaagaaatgaataaaagactgggctccatggtgaatgagtttaaggaacttgtctactcaccagattataatcctgaagggaaaattaccaagagaaaatgcaataatgaaggttccagaagcaaaaggcccaagcggagtattcagaagaggagctgaaatgcacaggctcttccaccaggtggaatcttgcctgcagcatctctcctgccatcaaaggtgctgccaaagtggcaaagatcctttaaagactgatgcacttctaaaggaggggtttctcgtggttggcactacagcctcaggcatttgtaccacactactggaggttcccaattattcttatgatcagacccttgcagcttgagtcattgtgtttcaaagtatttcaataacatgtaaatcagcagcctctgtggttggttcttttctgttgtcactcttcctactagcttctttgatttggcatcc
//
by
@meso_cacase at
DBCLS
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