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2024-04-16 13:27:05, GGRNA : RefSeq release 60 (20130726)
LOCUS NR_023380 4204 bp RNA linear PRI 16-JUL-2013
DEFINITION Homo sapiens coiled-coil domain containing 144C, pseudogene
(CCDC144CP), non-coding RNA.
ACCESSION NR_023380
VERSION NR_023380.1 GI:189571675
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4204)
AUTHORS Park,S.S., Stankiewicz,P., Bi,W., Shaw,C., Lehoczky,J., Dewar,K.,
Birren,B. and Lupski,J.R.
TITLE Structure and evolution of the Smith-Magenis syndrome repeat gene
clusters, SMS-REPs
JOURNAL Genome Res. 12 (5), 729-738 (2002)
PUBMED 11997339
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AL162090.1,
AC008088.8, AL162091.1, DV080283.1, DV080284.1, AC015818.32 and
DA321951.1.
Sequence Note: This RefSeq record was created from transcript and
genomic sequence data to make the sequence consistent with the
reference genome assembly. The genomic coordinates used for the
transcript record were based on alignments.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-282 AL162090.1 1-282
283-283 AC008088.8 65021-65021 c
284-664 AL162090.1 284-664
665-807 AC008088.8 50397-50539 c
808-881 AC008088.8 48247-48320 c
882-1616 AC008088.8 46263-46997 c
1617-1858 AL162091.1 335-576 c
1859-1892 AC008088.8 35506-35539 c
1893-2033 AC008088.8 35080-35220 c
2034-2546 DV080283.1 58-570
2547-2559 DV080284.1 33-45 c
2560-2622 DV080283.1 584-646
2623-3510 AC008088.8 20447-21334 c
3511-3687 AC015818.32 7494-7670
3688-4204 DA321951.1 1-517
FEATURES Location/Qualifiers
source 1..4204
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="17"
/map="17p11.2"
gene 1..4204
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/note="coiled-coil domain containing 144C, pseudogene"
/pseudo
/db_xref="GeneID:348254"
/db_xref="HGNC:29073"
misc_RNA 1..4204
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/product="coiled-coil domain containing 144C, pseudogene"
/pseudo
/db_xref="GeneID:348254"
/db_xref="HGNC:29073"
exon 1..487
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 12
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:4003634"
variation 66
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:2928659"
variation 148
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:2386427"
variation 178
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:200002403"
variation 196
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:200904643"
variation 218
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:4003651"
variation 223
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="g"
/db_xref="dbSNP:3955973"
variation 231
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:4003650"
variation 241
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:4003649"
variation 246
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="c"
/db_xref="dbSNP:188698031"
variation 265
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:370266367"
variation 283
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:181135422"
variation 291
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:3098964"
variation 367
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="t"
/db_xref="dbSNP:200224417"
variation 388
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:186187441"
exon 488..558
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 488
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="c"
/db_xref="dbSNP:202200804"
variation 522
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="c"
/db_xref="dbSNP:201640096"
exon 559..807
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 716
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:2543895"
variation 725
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="g"
/replace="t"
/db_xref="dbSNP:201532472"
variation 797
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="g"
/db_xref="dbSNP:199561206"
exon 808..881
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 820
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:2543883"
variation 845
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:200600676"
variation 863
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:201661650"
variation 881
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:2586593"
exon 882..1721
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 1117
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:375047935"
variation 1142
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:199727113"
variation 1203
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="g"
/replace="t"
/db_xref="dbSNP:200311247"
variation 1274
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:201152751"
variation 1280
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:2543861"
variation 1323
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:2543860"
exon 1722..1858
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
exon 1859..1892
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 1867..1868
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace=""
/replace="t"
/db_xref="dbSNP:368024222"
variation 1869
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="c"
/db_xref="dbSNP:149532100"
variation 1875
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="g"
/replace="t"
/db_xref="dbSNP:2656468"
variation 1890
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:2649251"
variation 1890
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:201588554"
exon 1893..2034
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 1901
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="c"
/db_xref="dbSNP:371324523"
variation 1921
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:143042302"
variation 1924
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="t"
/db_xref="dbSNP:200813224"
variation 1950
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:201988690"
exon 2035..2252
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
exon 2253..2436
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
exon 2437..2565
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 2439
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:375136344"
variation 2546
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:2694280"
variation 2547
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:2586668"
variation 2555
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="c"
/db_xref="dbSNP:2694279"
variation 2560
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:2694278"
exon 2566..3510
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 2727
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:192724828"
variation 2753
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:201964683"
variation 2762
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:145028674"
variation 2768
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="g"
/replace="t"
/db_xref="dbSNP:377515149"
variation 2921
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:149074404"
variation 3229..3230
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace=""
/replace="a"
/db_xref="dbSNP:201142988"
variation 3287
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:2120285"
variation 3314
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:2120284"
variation 3334
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="g"
/db_xref="dbSNP:189254683"
variation 3410
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:201853630"
exon 3511..3804
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 3547
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:202156910"
exon 3805..4025
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 3814
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="g"
/replace="t"
/db_xref="dbSNP:188508865"
variation 3917
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="g"
/db_xref="dbSNP:199643662"
variation 3936
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="c"
/replace="t"
/db_xref="dbSNP:145016780"
variation 3937
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:370969623"
variation 3952
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:2656406"
exon 4026..4068
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
exon 4069..4204
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/inference="alignment:Splign:1.39.8"
/pseudo
variation 4165
/gene="CCDC144CP"
/gene_synonym="CCDC144C"
/replace="a"
/replace="g"
/db_xref="dbSNP:185616265"
ORIGIN
cttggcttggcagtggtcgcttggcttggcgtggcagtgatcgcttggcttggcatttctggcttagcggtcctcctttcgcagattggaaaccgcgggctatcctgctgggaggttgtggccgaggcagtagctcgctactgatggtctcctggggtggagaaaagcggggaggggctgaggggtctccgaagccggcagtctacgccacgaggaaaaccggtagcgtcaggagccaggaggaccagtggtacttgggctacccgggggaccagtggtcctcgggcttctcctacagctggtggaaaaacagcgtcggcagcgagagcaagcacggtgagggcgccttagaccagccccagcacgatgtccgcctggaagatcttggcgagctccacagagctgcccggtcgggcgacgtccctggggtggagcacgtcttggttcctggagacactggcgtggacaagagggataggaagaagagcattcagcaactagttcctgaatataaggaaaaacagacacctgaaagtcttcctcaaaataacaatccagattggcatcctactaatttgacccttagtgatgagacttgtcagagatccaagaatctgaaagttgatgataaatgtccatctgtatcaccatcaatgcctgaaaatcagtcagcaaccaaagaactgggacagatgaacttaacagaacgagaaaagatggacactggggttgtacttctctcagggaatgatactctccatgacctgtgccaatcacagctaccagaaaacaaagagagcaaagaagcagaacaagacttggagctgacatcagaggaagagcaagaaagacttaaaggatgcgaaaataagcagccacaaaaaacgtctcaagaaccagaaatggctaaggattgtgatagagaggatatacctatatatccagtacttcctcatgtgcaaaaatctgaggaaatgcggattgaacaaggcaaattagagtggaaaaaccaattaaaactcgtcataaatgagttaaagcagaggtttggtgaaatttatgaaaaatacaaaattccggcttgtcctgaggaagagccactacttgataactctacaagaggaacagatgtgaaggatattccctttaatttgacaaataacatacctggttgtgaggaagaagatgcatctgaaatatctgtctcagtggtattcgagacatttcctgaacaaaaagaacccagtctcaaaaatatcatccattcatactaccatccgtactctgggtcccaggaacatgtttgccagtcatcttctaagcttcatttacatgaaaataaattagactgcgacaatgataacaaaccaggcattggacatatttttagtacagataagaactttcataatgatgcaagcactaagaaagcaaggaacccagaagtggttacggttgaaatgaaagaagaccaagagtttgatttgcaaatgacaaaaaatatgaaccaaaatagtgacagtggcagtacaaataactataaaagcctgaaacctaaattagaaaatctgagttctttaccaccagattctgacagaacatcagaagtatatctacatgaagaattacagcaagacatgcaaaagtttaagaatgaggtcaacacattagaagaagagttcctggctttgaagaaagaaaatgttcaacttcataaagaggttgaagaagaaatggagaagcacagaagtaatagcacagaattatcaggaaccctaactgatggtactactgttggcaatgatgatgatggactaaatcagcagattcctaggaaggaaaatggagagcatgacaggcctgcagataaaacatctaatgaaaagaacgaggtcaaaaaccaaatatatcctgaggctgactttgctgactcaatggagccatctgaaatagcctcggaggattgtgaattgtctcactctgtttatgagaattttatgttgctgattgaacaacttagaatggagtataaagattctgctagcctaccaagaatccaagaaagacacattttgtttgtgtgaacacttactgaaacttaagaataatcactgtgaccaacttacagtaaaacttaaacaaatggaaaatatggtcagtgtactacaaaatgagctatctgaaacaaaaaagacaaaattacagttagaacttcaaaaaattgaatgggagaaagagctgtacgatttgagacttgccttaaaacaagaaaatgaggagaaaagaaatgccgatatgttgtataataaagatagtgaacagttaagaataaaagaagaggagtgtgggaaagtggttgaaacaaagcaacaacttaaatggaatctgagaagacttgttaaggaattgaggacagtaagaaataacttggatctggttgtgcaggagagaaacgatgcccagaagcaactttctgaagaacaggatgccagaatattacaagatcagattctgacgagtaaacaaaaggaactagaaatggctcagaagaaaaggaatcctgagatttctcataggcatcagaaagaaaaggatctctttcatgaaaattgcatgttgcaggaagaaattgccttgctgagactggaaatagatacaataaaaaatcagaacaagcaaaaggaaaagaaatattttgaggacattgaggttgtgaaagaaaagaatgataaccttcaaaaaattataaaacgaaatgaggaaacattaacagaaacaatactccagtacagtggacagctgaacaatctgacagctgagaacaaaatgctcaattctgaactggagaatgggaaagagaaccaagaaagactagaaatagaaatggaatcataccgttgtagactggctgctgctgtacatgactgtgatcaaagtcagacagcaagagacctaaaacttgatttccagagaacaagacaagagtgggttcgtttacatgacaaaatgaaggttgatatgtctggcctacaagctaagaatgagattctttctgaaaaactttctaatgctgaaagtaaaattaacagcctacaaattcagctccataacacaagagatgctcttggaagagagagtttgattttggaacgtgtgcaaagagacctcagccaaacacagtgtcagaagaaagaaactgaacaaatgtaccaaagcaaactgaagaaatacattgccaagcaggaatctgtagaggagagattatctcaactacaaagtgaaaatatgttgcttcgacagcaactggatgatgttcacaagaaagctaacagtcaagaaaagacaatcagtactatccaagaccagtttcattctgctgccaaaaatcttcaagctgagagtgaaaagcagattctttcactacaagagaagaacaaggagctgatggatgaatataatcatttaaaagaaagaatggatcaatgtgagaaagagaaagcaggaagaaaaattgaccttacagaagcacaggaaactgtaccttcacgatgtctacatctggatgcagagaatgaagttcttcaacttcaacagacattattctctatgaaagcaatacaaaagcaatgtgaaacactacagaagaataagaagcagctgaaacaagaagtagtaaacctcaaaagttatatggaaagaaatatgttagaacgtggtgaagctgaatggcataaactgttgattgaagaaagagcaaggaaggagatagaagaaaaattaaacgaagccattctcaccttgcagaaacaagcagcagtatctcatgaacagttagcacagttaagggaggataatactacttcaataaaaactcagatggaactcacagtcatagatctggaatctgaaatctccagaataaaaacttcgcaagccgactttaataaaaccaaattggaaagatataaggaactctacctagaagaagtgaaagttagagaatccttgtcaaatgaactcagtagatgcagcagaagttgcaaaatgacctaactgcagaagtagcagctgctactaaatatgaacctggatcctatatagcttctcctctaggatttacacacaaggaaaatctgaatcaagatccagttttggaagtagcaaaagaatatgcacagattttaagaagaaaatacatactctg
//
by
@meso_cacase at
DBCLS
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