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2024-04-23 22:25:31, GGRNA : RefSeq release 60 (20130726)
LOCUS NR_002795 1628 bp RNA linear PRI 16-JUL-2013
DEFINITION Homo sapiens HOXA11 antisense RNA (HOXA11-AS), antisense RNA.
ACCESSION NR_002795
VERSION NR_002795.2 GI:197313738
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1628)
AUTHORS Chau,Y.M., Pando,S. and Taylor,H.S.
TITLE HOXA11 silencing and endogenous HOXA11 antisense ribonucleic acid
in the uterine endometrium
JOURNAL J. Clin. Endocrinol. Metab. 87 (6), 2674-2680 (2002)
PUBMED 12050232
REFERENCE 2 (bases 1 to 1628)
AUTHORS Potter,S.S. and Branford,W.W.
TITLE Evolutionary conservation and tissue-specific processing of Hoxa 11
antisense transcripts
JOURNAL Mamm. Genome 9 (10), 799-806 (1998)
PUBMED 9745033
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
BC025338.1, BI753022.1 and DA421792.1.
On Aug 28, 2008 this sequence version replaced gi:84872075.
##Evidence-Data-START##
Transcript exon combination :: BC025338.1, BM788987.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
ERS025084, ERS025088 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-531 BC025338.1 1-531
532-652 BI753022.1 501-621
653-1304 BC025338.1 653-1304
1305-1358 DA421792.1 1-54 c
1359-1628 BC025338.1 1358-1627
FEATURES Location/Qualifiers
source 1..1628
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="7"
/map="7p15.2"
gene 1..1628
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/note="HOXA11 antisense RNA"
/db_xref="GeneID:221883"
/db_xref="HGNC:24957"
/db_xref="MIM:607530"
ncRNA 1..1628
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/ncRNA_class="antisense_RNA"
/product="HOXA11 antisense RNA"
/db_xref="GeneID:221883"
/db_xref="HGNC:24957"
/db_xref="MIM:607530"
exon 1..856
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/inference="alignment:Splign:1.39.8"
variation 93..94
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace=""
/replace="gg"
/db_xref="dbSNP:71757806"
variation 114
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:17501125"
variation 173
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:1859167"
variation 191
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="t"
/db_xref="dbSNP:181739671"
variation 377
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:61741589"
variation 413
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:145975212"
variation 463
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:61744408"
variation 532
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="t"
/db_xref="dbSNP:17427875"
variation 589
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace=""
/replace="c"
/db_xref="dbSNP:34525417"
variation 593
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="c"
/replace="t"
/db_xref="dbSNP:189589409"
variation 599
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:183415294"
variation 603
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:139791828"
variation 707
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="c"
/db_xref="dbSNP:186258313"
variation 747
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="g"
/replace="t"
/db_xref="dbSNP:192066135"
variation 791
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="c"
/db_xref="dbSNP:141152665"
exon 857..1549
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/inference="alignment:Splign:1.39.8"
variation 860
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:17471611"
variation 865
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="c"
/db_xref="dbSNP:199819132"
variation 874
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="c"
/replace="t"
/db_xref="dbSNP:17437523"
variation 887
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:371430800"
variation 914
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:187946060"
variation 923
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="c"
/replace="t"
/db_xref="dbSNP:17472294"
variation 934
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:192834662"
variation 936
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace=""
/replace="c"
/db_xref="dbSNP:141075420"
variation 959
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="c"
/db_xref="dbSNP:370556593"
variation 972
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:79658629"
variation 1039
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:17472301"
variation 1055
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="c"
/db_xref="dbSNP:367716724"
variation 1122
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:17437530"
variation 1161
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="c"
/replace="t"
/db_xref="dbSNP:17501146"
variation 1176
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:376660543"
variation 1183
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="t"
/db_xref="dbSNP:371342582"
variation 1268
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="c"
/db_xref="dbSNP:112142694"
variation 1282
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="g"
/replace="t"
/db_xref="dbSNP:372251545"
variation 1300
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="c"
/replace="g"
/db_xref="dbSNP:113320315"
variation 1301
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="c"
/replace="g"
/db_xref="dbSNP:113338135"
variation 1302
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace=""
/replace="g"
/db_xref="dbSNP:200286450"
variation 1303
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace=""
/replace="c"
/db_xref="dbSNP:3214167"
variation 1379
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="a"
/replace="g"
/db_xref="dbSNP:188841102"
variation 1394
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="c"
/replace="t"
/db_xref="dbSNP:17501153"
variation 1467
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="c"
/replace="t"
/db_xref="dbSNP:1057459"
variation 1493
/gene="HOXA11-AS"
/gene_synonym="HOXA-AS5; HOXA11-AS1; HOXA11AS; HOXA11S;
NCRNA00076"
/replace="c"
/replace="t"
/db_xref="dbSNP:17501160"
ORIGIN
gccacctcaggggaagcaacagatcgtcactcggtgttctcaccgaaagcacgtaatcgccggtgtaactcatgttggctggggggcctcccggcgcgcgcggagaggctggggtgcgcccccatgcagcatgcttgtgctcaattgcagggtcctcgttctcgagtgtgcagagggcggtgagagctcaactctcgtccccacctcccacccgcagctccccgggtgggtgagggatgccctggactggggatagccaggtgggagtccgtcgctgtgtggcctgtggtctcggagtctgttctcctggagtctcgcatttgcacccccttcttcgcagtccccctcccatagacttgctctgggaagcgcctctgcctccgaccctagccggaaccccttcggggccagagtttgaagccgtggatgtgcctgcctggtggcttgtccgatttgcacggtgacttgattacactctctcattcatggtcacttccgaagcgctttagtgccttccgtccctaaaccgccaacagccagaacggcttctccccgcggtttgtcactgatccgcagggcccggaagggccttcgtcttacccgggatccacctctcccctcatcttccctgcctacctcttcatcccaccttctgtccttggagaaactccctcctcctcgctgcctgccgggcttcggagtgactcggcagagacagaggcacaggggctgccctgctgctcaccggtccacccatctgcctggtcttctggagctgaggactcgggaaaccatgcaattgaggcaagccttgggctgctttagaggcgctgacatccgaggagacttctcctgggaggtccaacagccgagcttagcccaccgggctctgggaaagacccgactgaggctaaagccgccccggaaggccaagtccgagttccatttcttgaagaggccggcgcgcgtaaggctgtgacattggccctggcgactggcttcccaggagctgttctttctcaggagctccacagcgcgggccatctccagaaaactgtcttcagagtgtatttccttttatcgtcaacccagagccccaccgcggctaatgcaagaggccaaaaaatgtttggaggaagaaaaacaaaggcaggaagtggcggcggcctgacggtgcgtgtgtgtctgcagagaagggagggagccggctcagtctcttcttgtttttccaaacttcaaggtccaggcagccctctgcagggccgggccccattgctccccgcgcggcattggaggtggccgcccggagaggagaaggccaacgcctgcgccaggcttgtcaggcggaaacggctaacaaggagatttggtcagcaaaacagacccagcctttccgaggcttcgtctgacttggcccgaaaggttggggagggggggcttgcgcagagcctcagggaccctcctctctggggactaccatccctgagccttacgcttctttccacagcctttgcaggcggaatatcggaataaagtgggtccaggcgccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
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