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2024-04-20 01:41:05, GGRNA : RefSeq release 60 (20130726)
LOCUS NR_002763 2306 bp RNA linear PRI 16-JUL-2013
DEFINITION Homo sapiens CPS1 intronic transcript 1 (non-protein coding)
(CPS1-IT1), non-coding RNA.
ACCESSION NR_002763 XR_001024 XR_001224
VERSION NR_002763.2 GI:192807280
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2306)
AUTHORS Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD,
Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, Zeeberg
B, Buetow KH, Schaefer CF, Bhat NK, Hopkins RF, Jordan H, Moore T,
Max SI, Wang J, Hsieh F, Diatchenko L, Marusina K, Farmer AA, Rubin
GM, Hong L, Stapleton M, Soares MB, Bonaldo MF, Casavant TL,
Scheetz TE, Brownstein MJ, Usdin TB, Toshiyuki S, Carninci P,
Prange C, Raha SS, Loquellano NA, Peters GJ, Abramson RD, Mullahy
SJ, Bosak SA, McEwan PJ, McKernan KJ, Malek JA, Gunaratne PH,
Richards S, Worley KC, Hale S, Garcia AM, Gay LJ, Hulyk SW,
Villalon DK, Muzny DM, Sodergren EJ, Lu X, Gibbs RA, Fahey J,
Helton E, Ketteman M, Madan A, Rodrigues S, Sanchez A, Whiting M,
Madan A, Young AC, Shevchenko Y, Bouffard GG, Blakesley RW,
Touchman JW, Green ED, Dickson MC, Rodriguez AC, Grimwood J,
Schmutz J, Myers RM, Butterfield YS, Krzywinski MI, Skalska U,
Smailus DE, Schnerch A, Schein JE, Jones SJ and Marra MA.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AC008172.2.
On Jun 25, 2008 this sequence version replaced gi:84872040.
Summary: This gene does not encode a protein, and it is located
within an intron of the gene encoding carbamoyl-phosphate
synthetase 1. [provided by RefSeq, Jul 2008].
Sequence Note: The RefSeq transcript was derived from genomic
sequence to make the sequence consistent with the reference genome
assembly. The genomic coordinates used for the transcript record
were based on alignments.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-2306 AC008172.2 86617-88922 c
FEATURES Location/Qualifiers
source 1..2306
/organism="Homo sapiens"
/mol_type="transcribed RNA"
/db_xref="taxon:9606"
/chromosome="2"
/map="2q34"
gene 1..2306
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/note="CPS1 intronic transcript 1 (non-protein coding)"
/db_xref="GeneID:29034"
/db_xref="HGNC:30102"
misc_RNA 1..2306
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/product="CPS1 intronic transcript 1 (non-protein coding)"
/db_xref="GeneID:29034"
/db_xref="HGNC:30102"
exon 1..2306
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/inference="alignment:Splign:1.39.8"
variation 2
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="g"
/replace="t"
/db_xref="dbSNP:3770684"
variation 16
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="t"
/db_xref="dbSNP:190044776"
variation 106
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="g"
/db_xref="dbSNP:3770683"
variation 138
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="t"
/db_xref="dbSNP:181695139"
variation 204
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="t"
/db_xref="dbSNP:370500605"
variation 345
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:370968228"
variation 355
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="t"
/db_xref="dbSNP:148371292"
variation 512
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:141602082"
variation 526
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:186655963"
variation 651
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="g"
/db_xref="dbSNP:189981705"
variation 653
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="t"
/db_xref="dbSNP:150875886"
variation 677..678
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace=""
/replace="c"
/db_xref="dbSNP:35804978"
variation 903
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="t"
/db_xref="dbSNP:181215111"
variation 916
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="g"
/db_xref="dbSNP:113259035"
variation 963
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="t"
/db_xref="dbSNP:185488558"
variation 1048
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:375761436"
variation 1087
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="t"
/db_xref="dbSNP:368936000"
variation 1128
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="g"
/replace="t"
/db_xref="dbSNP:10932345"
variation 1218
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:112033125"
variation 1259
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="t"
/db_xref="dbSNP:371934076"
variation 1268
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:73984652"
variation 1414
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="g"
/replace="t"
/db_xref="dbSNP:117714391"
variation 1517
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="t"
/db_xref="dbSNP:117065979"
variation 1622
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="t"
/db_xref="dbSNP:139364817"
variation 1623
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:114030723"
variation 1642
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="t"
/db_xref="dbSNP:142412131"
variation 1645
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="t"
/db_xref="dbSNP:183395816"
variation 1665
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="g"
/db_xref="dbSNP:372723984"
variation 1773
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="t"
/db_xref="dbSNP:374948149"
variation 1792
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="g"
/replace="t"
/db_xref="dbSNP:112758705"
variation 1796
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:145976847"
variation 1802
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:368851694"
variation 1885
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:139882581"
variation 2061
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="c"
/replace="t"
/db_xref="dbSNP:187248748"
variation 2088
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:143139688"
variation 2177
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:73076005"
variation 2196
/gene="CPS1-IT1"
/gene_synonym="CPS1-IT; CPS1IT; CPS1IT1; PRO0132"
/replace="a"
/replace="g"
/db_xref="dbSNP:146678638"
ORIGIN
aataaaacacttgcttttctttttgagaaaaattaggttctttttcatctatttaattattgcccatgtcaaatgcttggttttgaaaactgaggaattctatctgacaaagatgaaaccagctatagttgcttgtaaatcatcctttctagtgatcacataaaatgaacagtagacagcaaataatttaggaattgaacctatacatttatcttataattttgctgacttaagtttccctttcttggtttatgatgccagcagaacttctgtgtaaaattatagtctgttctactgttctcagtttcaggcaactgatttcaaatgcctatgaaaccactccaattaagccacatgggggtgctagaaacttatagtatgccagtcacagcagtggaaaagacctggggtggaaaatagcagatgttattgtgatttaaatttccacttgacatacgttctgatttttggacaaattcaatgttttaattgaatagttttcgttacaaccagaaggcaggttgagattctaactaagcataaataagggtatattgatagtgaaaaaggtccttggaggattaaaacaacacactgttacagatcatttataatatttttctgacttccacattctgttgcatttatttgccgacaatttgacattttcaatctccattttctggcataaatatatttgtaaatagggatattttctattgttcataatgatctacatttaaaactctttatgtaaagctttatatcatttcaaaaatttcaaaaacttacacttaaaatcatctctactgtataaatttgtttttgatccagggaggttgaagtgtctattatatagcaaaagctaaagtaaacctgaagtggaactcacagatgatccacggcgttagcaaacctaaaccctgaactcattatctgagtgtcactttatggtttaattcctttctttttgaagtgtcattgatgcacgcatagcaatttgataatgattgttatttagcggtattagataaataacaagaatagatggccactaaagctacctgtctccatcattttgtggcacataggggtctgaagttgaaagaatacgacagctgatggaatgaatgttaagtatgtaaggccttgagtttccttgccctattttaattatactcaccattagtctgggtctgagtcctctgctttttctcggcccctcaatatccagggaggcttagtcatcaaggtacgtactgctccaacagtaacaagagctccctattaatgacctatagctgacttacatattgcgagtttggagagaggctgagaagattagttgttctttttcatttgtatttatttatggtttactttgaagatctcaactgcttctgtgttagaatggctgtctttagctgtaggcctaggagctagcgatttatttggtgtgcgttcagagaactccaaaattctcctgcctcaacatctatctctgctgccaatgtaccgcactccctttgtacttttcatagagatccttgagaagacaggcagtggggctctcacttgggaaaagagaagtaaattaagagaaaaaatatagaatgctagacgtgggttttctggttccacccttgtgcattggaaggagcagactatggagccagagattggtgcgcagtcctccccactgtagaatcagacgtacatcacctctttcatttctccagattcatgttctttctcttaatctctgcttctagtttttttgtgaagcttaatttatataagtataaatgacatctgacatattgtgagggcccaagaaaatttttcctcttttcccctgaaaataaaaatgctacttgttgtaataaaggttactttatgattttagatatgtattatatattatgattttagatatgtagatatgatagttaaatatttaaagattcattttcagactcacaatttttatttgcttttatattttgcaatgtatcatttcttaatttcctttatgatgcatcacttattttaatatcagacctattttttaaaggaagcaattgatagctacgatgcaaatgctattcttattaaaagataaatagctttcccttatgctaatgaataaaaattcctactctacagttgttaatcaatctcgagttctaaagtccgataaacacatttaatagcagaggatgagcatatcattaaattgatggtcagtctctgacttgtgtttacatatagtcatctgaaatgaagttcagaatttgagtcccaaa
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