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2024-03-28 21:15:49, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_198995               3353 bp    mRNA    linear   PRI 17-APR-2013
DEFINITION  Homo sapiens coiled-coil domain containing 178 (CCDC178),
            transcript variant 2, mRNA.
ACCESSION   NM_198995 XM_351164
VERSION     NM_198995.2  GI:157671916
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Tao,S., Wang,Z., Feng,J., Hsu,F.C., Jin,G., Kim,S.T., Zhang,Z.,
            Gronberg,H., Zheng,L.S., Isaacs,W.B., Xu,J. and Sun,J.
  TITLE     A genome-wide search for loci interacting with known prostate
            cancer risk-associated genetic variants
  JOURNAL   Carcinogenesis 33 (3), 598-603 (2012)
   PUBMED   22219177
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK126038.1, BC091517.1, AC104956.6, AC025888.8, BC130535.1 and
            AK000027.1.
            On Sep 26, 2007 this sequence version replaced gi:39752676.
            
            Transcript Variant: This variant (2) differs in the 5' UTR and
            lacks an alternate in-frame exon in the mid-coding region, compared
            to variant 1, resulting in a shorter protein (isoform 2), compared
            to isoform 1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK126038.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           ERS025084, ERS025088 [ECO:0000350]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-150               AK126038.1         1-150
            151-1604            BC091517.1         123-1576
            1605-1605           AC104956.6         56342-56342         c
            1606-2011           AK126038.1         1606-2011
            2012-2012           AC025888.8         164652-164652       c
            2013-2172           AK126038.1         2013-2172
            2173-3040           BC130535.1         2155-3022
            3041-3353           AK000027.1         607-919
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="18"
                     /map="18q12.1"
     gene            1..3353
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /note="coiled-coil domain containing 178"
                     /db_xref="GeneID:374864"
                     /db_xref="HGNC:29588"
     exon            1..69
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            70..189
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            190..269
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    194..196
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /note="upstream in-frame stop codon"
     CDS             212..2701
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /note="isoform 2 is encoded by transcript variant 2;
                     coiled-coil domain-containing protein 178"
                     /codon_start=1
                     /product="coiled-coil domain-containing protein 178
                     isoform 2"
                     /protein_id="NP_945346.2"
                     /db_xref="GI:157671917"
                     /db_xref="CCDS:CCDS11906.1"
                     /db_xref="GeneID:374864"
                     /db_xref="HGNC:29588"
                     /translation="
MTENKTVSSSSTRDDQTNIGLTCQEVKALREKAWSRTNEGNAMSQSLVLYGASKENSEGFHESKMTNTEGVNKGIYFSYPCRRHSCAVVNIPAPCVNKMISHIQDVESKIQEHLKRFETSFEEWSRTSSTKDLKEDWSVTTPVKEVKPGEKRDEKCPELKQEMETLLSEAIRLIKSLETDRADAEEALKQQRSRKNMINMKIDSWSVWKLQELPLAVQKEHEAYLSDVIELQWHLEDKANQLQHFEKQKTELEEANAKIQADIDYMNEHGPLLDSKQNQELQDLKNHYKKKMEVMDLHRKVNEELEEALEACENARLKAQQIKEEIDKDIYQDEKTIEAYKREIYQLNSLFDHYSSSVINVNTNIEEKEEEVTEAIRETKSSKNELHSLSKMLEDLRRVYDQLTWKQKSHENQYLEAVNDFYAAKKTWDIELSDVAKDFSAISLACTKLTEDNKKLEIDINKITVKTNESIRKKSKYESEIKYLTIMKLKNDKHLKNIYKEAYRIGTLFHLTKHKTDEMEDKIAEVRRKFKGREEFLKKLTQGEVAAGMVLQKKLYSIYEVQALERKELIKNRAICAMSLAELQEPLLQLEDEAERIRSLDKEHSVSKRSAIFKDLEATKSKTMIFYAKINELNEELKAKEEEKKSFDQTLEILKNKFITMRFKREHAQTVFDHYMQEKKDCEERIFEEDQRFRVLLAVRQKTLQDTQKIIADSLEENLRLAQEYQQLQITFLKEKDNYFNIYDKQLSLDTSIRDKKQLCQLQRRMHTLWQEHFKLVVLFSQMRLANFQTDSQESIQKILAVQEESSNLMQHILGFFQTLTDGTCENDG
"
     exon            270..329
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            330..419
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            420..559
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            560..582
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            583..668
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            669..869
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            870..1090
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            1091..1233
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            1234..1387
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            1388..1483
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            1484..1620
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            1621..1804
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            1805..1867
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            1868..2029
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     variation       2010
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:457896"
     variation       2012
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:466113"
     exon            2030..2175
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            2176..2335
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            2336..2485
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            2486..2620
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     exon            2621..3310
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /inference="alignment:Splign:1.39.8"
     STS             2891..3068
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /standard_name="RH92259"
                     /db_xref="UniSTS:88116"
     variation       3008
                     /gene="CCDC178"
                     /gene_synonym="C18orf34"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:1052411"
ORIGIN      
gaccgcagcagagccggaggggtgggcaggcgcgggtccgggagacgcgcggggaaacgcgcggagccgtgtctgctcaatcaagtcaaatactgaacaacttcctggcggagaggctgagaattttatacttgcttgctcgaaagcaccccaaataagatgatccacgccaacacctcccctttacaggttttaaaatattcttataactatgactgaaaacaagacagtttcctcttcttccactagagatgatcaaaccaatataggtttaacatgtcaggaagtaaaggctctcagagagaaggcatggtcaaggacaaatgaaggcaatgccatgtctcaaagtttggttctatatggagcctctaaggagaacagtgaaggttttcatgaaagtaaaatgacaaatactgaaggggtgaataaaggcatttactttagctacccatgtcgacgtcacagctgtgccgtagtaaatattccagcaccttgtgtcaacaaaatgatttcacacatccaagatgtggagtccaaaatacaggagcatttgaaaaggtttgaaacttcttttgaagaatggagcagaacttcttccacaaaagacctgaaagaagattggagtgtaactacaccagtgaaagaggtcaaaccaggagaaaagagagatgaaaagtgtccagagttaaagcaggaaatggaaacattgctctcagaggccattcgtctcattaaaagtctagaaactgaccgggcagacgctgaagaagctttaaaacaacagagatcaagaaagaatatgattaacatgaaaattgactcttggtcagtctggaaacttcaagaactcccattggctgtgcagaaagaacatgaggcctatttgagtgatgttatagaattacaatggcatcttgaagataaagctaatcaactacaacattttgaaaaacaaaagacagagttagaagaagcaaatgcaaagattcaagcagacatagactacatgaatgaacatggccctctactggactctaagcagaatcaggaacttcaagatctgaagaaccattataaaaaaaaaatggaggtaatggacctacacagaaaagttaatgaagaacttgaagaagctttagaagcctgtgaaaatgccagattgaaggctcagcaaattaaagaagagattgataaggatatttaccaggatgaaaaaaccatagaggcctacaagagagagatatatcaacttaacagtctatttgatcattactcttcatcagtgataaatgttaatactaatattgaggagaaggaagaggaagtgactgaagcaataagggaaacaaagtcatcaaaaaatgaattacattctctatcaaaaatgctggaagatttgagaagagtttatgaccaactaacctggaagcaaaaaagtcatgaaaatcagtatctggaagcagttaatgatttttatgctgcaaaaaaaacatgggatattgagctttctgatgttgcaaaagatttttcagctatttctttggcatgtacaaaactgacggaagacaataaaaaacttgagattgatattaacaaaataacagtaaaaaccaatgaaagcatacggaaaaaatcaaaatacgaatctgaaataaaatatttgacaataatgaagttaaagaatgataaacatctcaagaacatctataaggaggcttatcgcattggtactcttttccacctaaccaaacacaagacagatgaaatggaagataaaatagcagaagtgagaagaaagttcaagggtagagaagaattcctgaaaaaactcactcaaggtgaagtggctgctggaatggtgcttcagaaaaaactatattccatttacgaagtccaggcacttgagcggaaagagcttataaaaaatagagcaatatgtgccatgtcactggcagaactacaggaacctctgcttcaactagaagatgaagctgaaagaatcagaagtctcgacaaagaacattctgttagtaaacgctcagcaatttttaaagacctagaagcaactaaaagtaagacaatgattttttatgcaaaaataaatgaattgaatgaggaattaaaagcaaaagaagaagaaaagaaaagttttgatcagacacttgaaatattaaagaacaaatttataactatgagatttaaaagggaacatgcacaaactgtgtttgatcattatatgcaagagaaaaaagactgtgaagagagaatctttgaggaagatcagagatttagagtgctccttgctgtaagacaaaaaactcttcaagatacccaaaaaataatagctgattcacttgaagaaaatctgcgtttagctcaagagtatcaacagctacagattacattcttaaaagaaaaggacaattatttcaatatatatgataaacagctatcacttgatacttcaattagagataagaaacagctctgtcagctgcagagaaggatgcacacactgtggcaggagcacttcaaactggtggtcctcttcagccagatgaggctggccaacttccagacagactctcaggagagtattcagaaaatattagctgtgcaggaggaatcttcaaatttaatgcaacacatcttaggtttcttccagactttgacagatggcacatgcgaaaacgatggttaagcaaacaaccaatgtatcttggatgctgaaataaaagacaagaaaagtcacacagttcagataacagtgtaattggacattcacctgtttgccatttcacacttccatgaacgaaaaactcactcacctcccagcatgctttgccactcttttactcacagcaaatccataacaatgaaacaggtgactttcatgctgctgtcaggaacgatctaatttcagctctgggtgactgattgcaattggctttgcctcatctgataattaatctatgtcaccattaattggaagagagaataattactggcggtgttgacagtgactgttcgcttccccagatttccctatcgtcttggcccaaataaaggctttgccattcagtacttaaagtttgtgtaaactgtaacaatatctatgcccatgtgacactttgagacactctgtctaatgtacttttgtttttgtgtttaccagtcttttttagctcactgagagctgtctctctcaatcactcctcaatgttctatcttaattttgtggaagtttaaagttttcaatgagctggagatgaatgattaatgaataaatttaaatgcttcattttgtccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
//

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