2024-03-28 21:15:49, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_198995 3353 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens coiled-coil domain containing 178 (CCDC178), transcript variant 2, mRNA. ACCESSION NM_198995 XM_351164 VERSION NM_198995.2 GI:157671916 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3353) AUTHORS Tao,S., Wang,Z., Feng,J., Hsu,F.C., Jin,G., Kim,S.T., Zhang,Z., Gronberg,H., Zheng,L.S., Isaacs,W.B., Xu,J. and Sun,J. TITLE A genome-wide search for loci interacting with known prostate cancer risk-associated genetic variants JOURNAL Carcinogenesis 33 (3), 598-603 (2012) PUBMED 22219177 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK126038.1, BC091517.1, AC104956.6, AC025888.8, BC130535.1 and AK000027.1. On Sep 26, 2007 this sequence version replaced gi:39752676. Transcript Variant: This variant (2) differs in the 5' UTR and lacks an alternate in-frame exon in the mid-coding region, compared to variant 1, resulting in a shorter protein (isoform 2), compared to isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK126038.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support ERS025084, ERS025088 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-150 AK126038.1 1-150 151-1604 BC091517.1 123-1576 1605-1605 AC104956.6 56342-56342 c 1606-2011 AK126038.1 1606-2011 2012-2012 AC025888.8 164652-164652 c 2013-2172 AK126038.1 2013-2172 2173-3040 BC130535.1 2155-3022 3041-3353 AK000027.1 607-919 FEATURES Location/Qualifiers source 1..3353 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="18" /map="18q12.1" gene 1..3353 /gene="CCDC178" /gene_synonym="C18orf34" /note="coiled-coil domain containing 178" /db_xref="GeneID:374864" /db_xref="HGNC:29588" exon 1..69 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 70..189 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 190..269 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" misc_feature 194..196 /gene="CCDC178" /gene_synonym="C18orf34" /note="upstream in-frame stop codon" CDS 212..2701 /gene="CCDC178" /gene_synonym="C18orf34" /note="isoform 2 is encoded by transcript variant 2; coiled-coil domain-containing protein 178" /codon_start=1 /product="coiled-coil domain-containing protein 178 isoform 2" /protein_id="NP_945346.2" /db_xref="GI:157671917" /db_xref="CCDS:CCDS11906.1" /db_xref="GeneID:374864" /db_xref="HGNC:29588" /translation="
MTENKTVSSSSTRDDQTNIGLTCQEVKALREKAWSRTNEGNAMSQSLVLYGASKENSEGFHESKMTNTEGVNKGIYFSYPCRRHSCAVVNIPAPCVNKMISHIQDVESKIQEHLKRFETSFEEWSRTSSTKDLKEDWSVTTPVKEVKPGEKRDEKCPELKQEMETLLSEAIRLIKSLETDRADAEEALKQQRSRKNMINMKIDSWSVWKLQELPLAVQKEHEAYLSDVIELQWHLEDKANQLQHFEKQKTELEEANAKIQADIDYMNEHGPLLDSKQNQELQDLKNHYKKKMEVMDLHRKVNEELEEALEACENARLKAQQIKEEIDKDIYQDEKTIEAYKREIYQLNSLFDHYSSSVINVNTNIEEKEEEVTEAIRETKSSKNELHSLSKMLEDLRRVYDQLTWKQKSHENQYLEAVNDFYAAKKTWDIELSDVAKDFSAISLACTKLTEDNKKLEIDINKITVKTNESIRKKSKYESEIKYLTIMKLKNDKHLKNIYKEAYRIGTLFHLTKHKTDEMEDKIAEVRRKFKGREEFLKKLTQGEVAAGMVLQKKLYSIYEVQALERKELIKNRAICAMSLAELQEPLLQLEDEAERIRSLDKEHSVSKRSAIFKDLEATKSKTMIFYAKINELNEELKAKEEEKKSFDQTLEILKNKFITMRFKREHAQTVFDHYMQEKKDCEERIFEEDQRFRVLLAVRQKTLQDTQKIIADSLEENLRLAQEYQQLQITFLKEKDNYFNIYDKQLSLDTSIRDKKQLCQLQRRMHTLWQEHFKLVVLFSQMRLANFQTDSQESIQKILAVQEESSNLMQHILGFFQTLTDGTCENDG
" exon 270..329 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 330..419 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 420..559 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 560..582 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 583..668 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 669..869 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 870..1090 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1091..1233 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1234..1387 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1388..1483 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1484..1620 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1621..1804 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1805..1867 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 1868..2029 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" variation 2010 /gene="CCDC178" /gene_synonym="C18orf34" /replace="g" /replace="t" /db_xref="dbSNP:457896" variation 2012 /gene="CCDC178" /gene_synonym="C18orf34" /replace="a" /replace="g" /db_xref="dbSNP:466113" exon 2030..2175 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 2176..2335 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 2336..2485 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 2486..2620 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" exon 2621..3310 /gene="CCDC178" /gene_synonym="C18orf34" /inference="alignment:Splign:1.39.8" STS 2891..3068 /gene="CCDC178" /gene_synonym="C18orf34" /standard_name="RH92259" /db_xref="UniSTS:88116" variation 3008 /gene="CCDC178" /gene_synonym="C18orf34" /replace="g" /replace="t" /db_xref="dbSNP:1052411" ORIGIN
gaccgcagcagagccggaggggtgggcaggcgcgggtccgggagacgcgcggggaaacgcgcggagccgtgtctgctcaatcaagtcaaatactgaacaacttcctggcggagaggctgagaattttatacttgcttgctcgaaagcaccccaaataagatgatccacgccaacacctcccctttacaggttttaaaatattcttataactatgactgaaaacaagacagtttcctcttcttccactagagatgatcaaaccaatataggtttaacatgtcaggaagtaaaggctctcagagagaaggcatggtcaaggacaaatgaaggcaatgccatgtctcaaagtttggttctatatggagcctctaaggagaacagtgaaggttttcatgaaagtaaaatgacaaatactgaaggggtgaataaaggcatttactttagctacccatgtcgacgtcacagctgtgccgtagtaaatattccagcaccttgtgtcaacaaaatgatttcacacatccaagatgtggagtccaaaatacaggagcatttgaaaaggtttgaaacttcttttgaagaatggagcagaacttcttccacaaaagacctgaaagaagattggagtgtaactacaccagtgaaagaggtcaaaccaggagaaaagagagatgaaaagtgtccagagttaaagcaggaaatggaaacattgctctcagaggccattcgtctcattaaaagtctagaaactgaccgggcagacgctgaagaagctttaaaacaacagagatcaagaaagaatatgattaacatgaaaattgactcttggtcagtctggaaacttcaagaactcccattggctgtgcagaaagaacatgaggcctatttgagtgatgttatagaattacaatggcatcttgaagataaagctaatcaactacaacattttgaaaaacaaaagacagagttagaagaagcaaatgcaaagattcaagcagacatagactacatgaatgaacatggccctctactggactctaagcagaatcaggaacttcaagatctgaagaaccattataaaaaaaaaatggaggtaatggacctacacagaaaagttaatgaagaacttgaagaagctttagaagcctgtgaaaatgccagattgaaggctcagcaaattaaagaagagattgataaggatatttaccaggatgaaaaaaccatagaggcctacaagagagagatatatcaacttaacagtctatttgatcattactcttcatcagtgataaatgttaatactaatattgaggagaaggaagaggaagtgactgaagcaataagggaaacaaagtcatcaaaaaatgaattacattctctatcaaaaatgctggaagatttgagaagagtttatgaccaactaacctggaagcaaaaaagtcatgaaaatcagtatctggaagcagttaatgatttttatgctgcaaaaaaaacatgggatattgagctttctgatgttgcaaaagatttttcagctatttctttggcatgtacaaaactgacggaagacaataaaaaacttgagattgatattaacaaaataacagtaaaaaccaatgaaagcatacggaaaaaatcaaaatacgaatctgaaataaaatatttgacaataatgaagttaaagaatgataaacatctcaagaacatctataaggaggcttatcgcattggtactcttttccacctaaccaaacacaagacagatgaaatggaagataaaatagcagaagtgagaagaaagttcaagggtagagaagaattcctgaaaaaactcactcaaggtgaagtggctgctggaatggtgcttcagaaaaaactatattccatttacgaagtccaggcacttgagcggaaagagcttataaaaaatagagcaatatgtgccatgtcactggcagaactacaggaacctctgcttcaactagaagatgaagctgaaagaatcagaagtctcgacaaagaacattctgttagtaaacgctcagcaatttttaaagacctagaagcaactaaaagtaagacaatgattttttatgcaaaaataaatgaattgaatgaggaattaaaagcaaaagaagaagaaaagaaaagttttgatcagacacttgaaatattaaagaacaaatttataactatgagatttaaaagggaacatgcacaaactgtgtttgatcattatatgcaagagaaaaaagactgtgaagagagaatctttgaggaagatcagagatttagagtgctccttgctgtaagacaaaaaactcttcaagatacccaaaaaataatagctgattcacttgaagaaaatctgcgtttagctcaagagtatcaacagctacagattacattcttaaaagaaaaggacaattatttcaatatatatgataaacagctatcacttgatacttcaattagagataagaaacagctctgtcagctgcagagaaggatgcacacactgtggcaggagcacttcaaactggtggtcctcttcagccagatgaggctggccaacttccagacagactctcaggagagtattcagaaaatattagctgtgcaggaggaatcttcaaatttaatgcaacacatcttaggtttcttccagactttgacagatggcacatgcgaaaacgatggttaagcaaacaaccaatgtatcttggatgctgaaataaaagacaagaaaagtcacacagttcagataacagtgtaattggacattcacctgtttgccatttcacacttccatgaacgaaaaactcactcacctcccagcatgctttgccactcttttactcacagcaaatccataacaatgaaacaggtgactttcatgctgctgtcaggaacgatctaatttcagctctgggtgactgattgcaattggctttgcctcatctgataattaatctatgtcaccattaattggaagagagaataattactggcggtgttgacagtgactgttcgcttccccagatttccctatcgtcttggcccaaataaaggctttgccattcagtacttaaagtttgtgtaaactgtaacaatatctatgcccatgtgacactttgagacactctgtctaatgtacttttgtttttgtgtttaccagtcttttttagctcactgagagctgtctctctcaatcactcctcaatgttctatcttaattttgtggaagtttaaagttttcaatgagctggagatgaatgattaatgaataaatttaaatgcttcattttgtccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
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