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2024-04-20 05:37:57, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_173493 3250 bp mRNA linear PRI 17-APR-2013
DEFINITION Homo sapiens PAS domain containing 1 (PASD1), mRNA.
ACCESSION NM_173493
VERSION NM_173493.2 GI:157785547
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3250)
AUTHORS Joseph-Pietras,D., Gao,Y., Zojer,N., Ait-Tahar,K., Banham,A.H.,
Pulford,K., Rice,J., Savelyeva,N. and Sahota,S.S.
TITLE DNA vaccines to target the cancer testis antigen PASD1 in human
multiple myeloma
JOURNAL Leukemia 24 (11), 1951-1959 (2010)
PUBMED 20861911
REMARK GeneRIF: PASD1-derived epitopes are both efficiently and
selectively processed and presented by native human multiple
myeloma cells as cancer vaccines.
REFERENCE 2 (bases 1 to 3250)
AUTHORS Ghafouri-Fard,S., Abbasi,A., Moslehi,H., Faramarzi,N., Taba Taba
Vakili,S., Mobasheri,M.B. and Modarressi,M.H.
TITLE Elevated expression levels of testis-specific genes TEX101 and
SPATA19 in basal cell carcinoma and their correlation with clinical
and pathological features
JOURNAL Br. J. Dermatol. 162 (4), 772-779 (2010)
PUBMED 19886887
REFERENCE 3 (bases 1 to 3250)
AUTHORS Ait-Tahar,K., Liggins,A.P., Collins,G.P., Campbell,A., Barnardo,M.,
Lawrie,C., Moir,D., Hatton,C., Banham,A.H. and Pulford,K.
TITLE Cytolytic T-cell response to the PASD1 cancer testis antigen in
patients with diffuse large B-cell lymphoma
JOURNAL Br. J. Haematol. 146 (4), 396-407 (2009)
PUBMED 19552722
REFERENCE 4 (bases 1 to 3250)
AUTHORS Sahota,S.S., Goonewardena,C.M., Cooper,C.D., Liggins,A.P.,
Ait-Tahar,K., Zojer,N., Stevenson,F.K., Banham,A.H. and Pulford,K.
TITLE PASD1 is a potential multiple myeloma-associated antigen
JOURNAL Blood 108 (12), 3953-3955 (2006)
PUBMED 17114574
REFERENCE 5 (bases 1 to 3250)
AUTHORS Cooper,C.D., Liggins,A.P., Ait-Tahar,K., Roncador,G., Banham,A.H.
and Pulford,K.
TITLE PASD1, a DLBCL-associated cancer testis antigen and candidate for
lymphoma immunotherapy
JOURNAL Leukemia 20 (12), 2172-2174 (2006)
PUBMED 17024112
REFERENCE 6 (bases 1 to 3250)
AUTHORS Guinn,B.A., Bland,E.A., Lodi,U., Liggins,A.P., Tobal,K.,
Petters,S., Wells,J.W., Banham,A.H. and Mufti,G.J.
TITLE Humoral detection of leukaemia-associated antigens in presentation
acute myeloid leukaemia
JOURNAL Biochem. Biophys. Res. Commun. 335 (4), 1293-1304 (2005)
PUBMED 16112646
REFERENCE 7 (bases 1 to 3250)
AUTHORS Liggins,A.P., Brown,P.J., Asker,K., Pulford,K. and Banham,A.H.
TITLE A novel diffuse large B-cell lymphoma-associated cancer testis
antigen encoding a PAS domain protein
JOURNAL Br. J. Cancer 91 (1), 141-149 (2004)
PUBMED 15162151
REFERENCE 8 (bases 1 to 3250)
AUTHORS Liggins,A.P., Guinn,B.A., Hatton,C.S., Pulford,K. and Banham,A.H.
TITLE Serologic detection of diffuse large B-cell lymphoma-associated
antigens
JOURNAL Int. J. Cancer 110 (4), 563-569 (2004)
PUBMED 15122589
REMARK Erratum:[Int J Cancer. 2004 Jul 20;110(6):934]
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from DB095017.1, AK097552.1,
BC040301.1, DB523527.1 and AF274854.4.
This sequence is a reference standard in the RefSeqGene project.
On Oct 1, 2007 this sequence version replaced gi:27735094.
Summary: This gene encodes a protein that is thought to function as
a transcription factor. The protein is a cancer-associated antigen
that can stimulate autologous T-cell responses, and it is therefore
considered to be a potential immunotherapeutic target for the
treatment of various hematopoietic malignancies, including diffuse
large B-cell lymphoma. [provided by RefSeq, May 2010].
##Evidence-Data-START##
Transcript exon combination :: AK097552.1, BC040301.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
ERS025085 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-87 DB095017.1 358-444
88-650 AK097552.1 1-563
651-3019 BC040301.1 462-2830
3020-3217 AK097552.1 2933-3130
3218-3248 DB523527.1 405-435
3249-3250 AF274854.4 102275-102276
FEATURES Location/Qualifiers
source 1..3250
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="X"
/map="Xq28"
gene 1..3250
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/note="PAS domain containing 1"
/db_xref="GeneID:139135"
/db_xref="HGNC:20686"
exon 1..305
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 39
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:139683139"
variation 75
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:5970069"
variation 95
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:188417723"
variation 105
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="g"
/replace="t"
/db_xref="dbSNP:192867554"
variation 156
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:373468731"
variation 172
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:5970070"
variation 304
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:146148430"
exon 306..360
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 318
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:201942728"
variation 328
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:374661476"
misc_feature 330..332
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/note="upstream in-frame stop codon"
CDS 333..2654
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/note="cancer/testis antigen 63"
/codon_start=1
/product="PAS domain-containing protein 1"
/protein_id="NP_775764.2"
/db_xref="GI:157785548"
/db_xref="CCDS:CCDS35431.1"
/db_xref="GeneID:139135"
/db_xref="HGNC:20686"
/translation="
MKMRGEKRRDKVNPKSSQRKLNWIPSFPTYDYFNQVTLQLLDGFMITLSTDGVIICVAENISSLLGHLPAEIVGKKLLSLLPDEEKDEVYQKIILKFPLLNSETHIEFCCHLKRGNVEHGDSSAYENVKFIVNVRDICNEFPVVFSGLFSSHLCADFAACVPQEDRLYLVGNVCILRTQLLQQLYTSKAVSDEAVLTQDSDEEPFVGELSSSQGQRGHTSMKAVYVEPAAAAAAAAISDDQIDIAEVEQYGPQENVHMFVDSDSTYCSSTVFLDTMPESPALSLQDFRGEPEVNPLYRADPVDLEFSVDQVDSVDQEGPMDQQDPENPVAPLDQAGLMDPVDPEDSVDLGAAGASAQPLQPSSPVAYDIISQELELMKKLKEQLEERTWLLHDAIQNQQNALELMMDHLQKQPNTLRHVVIPDLQSSEAVPKKQQKQHAGQVKRPLPHPKDVKCFCGLSLSNSLKNTGELQEPCVAFNQQQLVQQEQHLKEQQRQLREQLQQLREQRKVQKQKKMQEKKKLQEQKMQEKKKLQEQRRQKKKKLQERKKWQGQMLQKEPEEEQQKQQLQEQPLKHNVIVGNERVQICLQNPRDVSVPLCNHPVRFLQAQPIVPVQRAAEQQPSGFYQDENCGQQEDESQSFYPEAYQGPPVNQLPLIDTSNSEAISSSSIPQFPITSDSTISTLETPQDYIRLWQELSDSLGPVVQVNTWSCDEQGTLHGQPTYHQVQVSEVGVEGPPDPQAFQGPAAYQPDQMRSAEQTRLMPAEQRDSNKPC
"
misc_feature 426..743
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/note="PAS fold; Region: PAS; pfam00989"
/db_xref="CDD:201538"
misc_feature 453..743
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/note="PAS domain; PAS motifs appear in archaea,
eubacteria and eukarya. Probably the most surprising
identification of a PAS domain was that in EAG-like
K+-channels. PAS domains have been found to bind ligands,
and to act as sensors for light and oxygen in...; Region:
PAS; cd00130"
/db_xref="CDD:29035"
misc_feature order(501..503,513..515,531..533,570..581,660..662,
675..677)
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/note="putative active site [active]"
/db_xref="CDD:29035"
misc_feature order(561..563,573..575,597..599,606..611,696..698,
702..704)
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/note="heme pocket [chemical binding]; other site"
/db_xref="CDD:29035"
exon 361..449
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 362
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:375084420"
variation 365
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:17853985"
variation 366
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="g"
/db_xref="dbSNP:145376792"
variation 371
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="t"
/db_xref="dbSNP:148760230"
variation 380
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:201872386"
variation 388
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:200330958"
variation 421
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:372329873"
variation 442
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:375505833"
variation 443
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:370176062"
exon 450..539
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 512
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:372859246"
exon 540..639
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 546
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:199702421"
variation 614
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="t"
/db_xref="dbSNP:4520299"
variation 636
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="g"
/replace="t"
/db_xref="dbSNP:144931156"
exon 640..750
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 642
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:147949778"
variation 684
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:185349123"
variation 688
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:377412480"
variation 729
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="c"
/db_xref="dbSNP:370121828"
variation 732
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:201256425"
exon 751..878
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 762
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:113985089"
variation 776
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="g"
/replace="t"
/db_xref="dbSNP:201964546"
variation 806
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:200728374"
variation 845
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:5924977"
variation 854
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:5924978"
variation 868
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:147766123"
exon 879..961
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 892
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:369014871"
variation 916
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:200605581"
variation 938
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:143131546"
variation 942
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:150321315"
variation 952
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="g"
/replace="t"
/db_xref="dbSNP:138039578"
exon 962..1049
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 969
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:5924658"
variation 976
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:144905518"
variation 991
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:377394936"
variation 1016
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:141831302"
variation 1030
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:370897263"
variation 1045
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:146310228"
exon 1050..1173
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 1097
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:148506737"
variation 1104
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:80111059"
exon 1174..1403
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 1195
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:182463166"
variation 1198
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:199829404"
variation 1209
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:111758820"
variation 1219
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:139906426"
variation 1235
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="t"
/db_xref="dbSNP:139766538"
variation 1247
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:143974284"
variation 1250
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:147926578"
variation 1252
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:199961228"
variation 1289
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:372153088"
variation 1290..1307
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace=""
/replace="atggaccagcaggaccca"
/db_xref="dbSNP:72349307"
variation 1290
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:202122336"
variation 1299
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="g"
/db_xref="dbSNP:200813040"
variation 1303
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:140220789"
variation 1315
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="c"
/db_xref="dbSNP:145659327"
variation 1325
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:75291816"
variation 1377
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="g"
/db_xref="dbSNP:202217272"
exon 1404..1562
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 1406
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:148812968"
variation 1436
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:200330205"
variation 1454
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:45538743"
variation 1488
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:150950167"
variation 1493
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="g"
/db_xref="dbSNP:367679308"
variation 1495
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:372131422"
variation 1534
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="c"
/db_xref="dbSNP:375117597"
variation 1545
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:200879243"
variation 1556
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:369849468"
exon 1563..1769
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 1581
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:201707889"
variation 1607
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:200291644"
variation 1646
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:140838252"
variation 1647
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:370064836"
variation 1663
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:200147315"
variation 1686
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:144812433"
variation 1703
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:6627174"
variation 1749
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:140452680"
variation 1757
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="g"
/replace="t"
/db_xref="dbSNP:145547891"
variation 1768
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="t"
/db_xref="dbSNP:185186066"
exon 1770..2248
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 1805
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="g"
/replace="t"
/db_xref="dbSNP:370395923"
variation 1810
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="t"
/db_xref="dbSNP:202190429"
variation 1812
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:374356073"
variation 1813
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:200236956"
variation 1822
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:201718557"
variation 1857
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:41312626"
variation 1897
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:371132122"
variation 1907
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:181008622"
variation 1928
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:113328670"
variation 1938
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:374451883"
variation 1942
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:41302166"
variation 1959
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="g"
/db_xref="dbSNP:138150195"
variation 1962
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="g"
/db_xref="dbSNP:149555728"
variation 1968
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:144296185"
variation 2031
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:41299110"
variation 2077
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:201389348"
variation 2101
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:150496278"
variation 2104
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:143087714"
variation 2109
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:147522572"
variation 2166
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:367708659"
variation 2191
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:200948810"
variation 2210
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:140074898"
variation 2218
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:376182308"
variation 2225
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:368148991"
exon 2249..2507
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 2279
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:145671669"
variation 2355
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="c"
/db_xref="dbSNP:150680505"
variation 2360
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="c"
/db_xref="dbSNP:139050776"
variation 2373
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:369210288"
variation 2379
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:149869100"
variation 2432
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:150597701"
variation 2437
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:140931775"
variation 2455
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:182668710"
variation 2472
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="g"
/db_xref="dbSNP:199952741"
variation 2479
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:143262698"
variation 2494
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:201580307"
variation 2500
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:146737619"
exon 2508..3250
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/inference="alignment:Splign:1.39.8"
variation 2538
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:140318659"
variation 2542
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:376922795"
variation 2575
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:201548391"
variation 2594
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:369360960"
variation 2599
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:142640477"
variation 2600
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:372806683"
STS 2603..2754
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/standard_name="c03503sbk"
/db_xref="UniSTS:96243"
variation 2605
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:181234241"
variation 2623
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:376237490"
variation 2647
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:148051878"
variation 2687
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="g"
/replace="t"
/db_xref="dbSNP:185875484"
variation 2688
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="g"
/replace="t"
/db_xref="dbSNP:375589752"
variation 2689
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="g"
/replace="t"
/db_xref="dbSNP:376879879"
variation 2707
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="t"
/db_xref="dbSNP:189018655"
variation 2741
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:4553055"
variation 2778..2781
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace=""
/replace="ttat"
/db_xref="dbSNP:35199499"
variation 2780..2783
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace=""
/replace="attt"
/db_xref="dbSNP:10580019"
variation 2780
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:199578847"
variation 2796
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="g"
/db_xref="dbSNP:111805127"
variation 2883
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="g"
/replace="t"
/db_xref="dbSNP:4363323"
variation 2959
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:181655773"
variation 2979
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:186357524"
polyA_signal 3004..3009
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
variation 3006
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="t"
/db_xref="dbSNP:41311680"
polyA_site 3026
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
variation 3047
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="t"
/db_xref="dbSNP:11796697"
variation 3074
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="g"
/db_xref="dbSNP:138026217"
variation 3095
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="c"
/replace="g"
/db_xref="dbSNP:12845545"
variation 3122
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="t"
/db_xref="dbSNP:149500788"
variation 3218
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
/replace="a"
/replace="t"
/db_xref="dbSNP:2280923"
polyA_signal 3227..3232
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
polyA_site 3250
/gene="PASD1"
/gene_synonym="CT63; OXTES1"
ORIGIN
agttccagagacagtagttatctcgggccccaacatcgcgaggtctagggaaaaatgctaccactcctcccccctacttccgctgccacgctgcctccatgcctgcctcccctctctgccacgcccccaccacgcgctttgcactctggggcccacgcacttccctgaagagtctagaagctgctcctcatttccagactttccgggcgcccaccaggctcccgggctctcaccggagaccacagggaggagcttcaaggtaccccaagtccctgcggcctccagcagtgaagagttccacaagggagtcttcctacgtcactgaataatgaatgaagatgagaggggaaaagagaagagacaaagtcaatccaaaaagctctcaaaggaaattaaactggattccatcatttcctacctatgattacttcaaccaagtgacgctacagttattagatggctttatgattacactgagcacagatggagtgatcatttgtgtggctgaaaacatctcttctcttcttggacatttaccagctgagattgtgggcaaaaaattattaagccttctgcctgatgaagagaaagatgaagtctaccaaaagattattctcaaatttcctttactaaactcagaaacacatattgaattttgctgtcatttaaaaagaggaaatgtcgaacatggtgatagttctgcttacgaaaacgtgaaatttattgtgaatgtaagagatatttgtaatgagtttcctgtggtctttagtggcttgttttccagccacctctgtgctgactttgctgcatgtgttcctcaggaggatcggctttatcttgtgggaaatgtttgcattctcaggactcagctcctgcagcaactttacacttcaaaggcagtcagtgatgaagctgtacttacacaagattcagatgaggaaccttttgtgggagagctcagtagctctcaaggtcaaagaggacacactagcatgaaagccgtgtacgttgaacccgctgctgctgctgctgctgctgctatctcagacgaccaaattgatattgcagaggttgagcagtatggaccacaagaaaacgttcacatgtttgtagattctgattcaacttattgctccagtacagttttcctggatactatgcctgaatctccagccttatccttgcaagactttcgaggtgagcctgaggtgaatccattgtacagggcagacccagtggacctggagttctcggtggatcaggtggactcagtggaccaggagggcccaatggaccagcaggacccagagaacccagttgccccgttggaccaggcaggcctgatggatccagtggatccagaggactcagtggacctgggggctgctggcgcaagtgctcagccattacagccatcatcaccagttgcatatgacatcattagccaggaactggaactgatgaagaagttgaaggagcagctagaagagaggacttggttgctgcatgatgccatccaaaaccagcagaatgcattggaattgatgatggatcaccttcagaagcagccaaacacattacgccacgttgtcattcctgatctccaatcttcggaggcagtgcccaagaaacaacagaaacaacacgctgggcaagtgaagcggcctctcccacatcccaaggacgtcaagtgtttctgtggtttatctttatccaactctctcaaaaacactggggagcttcaggagccttgtgttgccttcaaccagcagcaactggtgcagcaagaacaacacctgaaggagcagcagcggcagctgcgggagcagctgcaacagctgagagagcaaaggaaggtgcagaagcagaagaagatgcaggagaagaagaagctgcaggagcagaaaatgcaggagaagaagaagctgcaggagcagaggcggcaaaagaagaagaagctacaggagcggaagaagtggcaggggcagatgctacagaaagagccagaggaggagcagcagaagcagcagctgcaagagcagccactgaagcataatgtcatcgtggggaatgagagggtgcagatatgcctgcaaaacccacgtgacgtatctgtgcccctctgcaatcaccctgttagatttttacaggcccaacccattgttcctgtccagagagcagctgaacaacagccctctggcttctatcaagatgaaaactgtgggcaacaggaagatgagagtcaaagtttttatcctgaggcgtatcaagggccccccgtgaaccagctgccattgatagatacctcaaactctgaggcaatttcttcttccagcattcctcagtttcccataacttcagactcaaccataagcaccctggagaccccacaggattacatccggctttggcaagagttgtctgattcactcggtcctgttgtccaagtgaacacttggtcttgcgatgagcagggcaccctgcacggccaacccacctaccatcaggtgcaagtttctgaggtaggagtcgagggacctcctgatccacaggctttccaaggccctgctgcataccagccagaccagatgagatctgcggagcagaccagattgatgcctgcagagcaacgtgactcaaataagccgtgctaacagtactttcatgaccagtgatgaggggaaatggggggagggggcaggccaatgaggtctgcatggccaggggaccttcaaggtgcgtaaagtcccttggggtagggtttagtgggtagagacttatttgtttcctgataggttatgtttgtaattgtttgttaagcacagcctgtttcttggaagttatgctgtagaggcagcctgtgatccgtagtatgctagggtgtgacagcagccagccacagctggatctgatgtcttgtctgccccgcccagctttgcatatccatgttctaccacaggaaggtggcctgccaagagtctgctcaaagttttcaacataaagaataaagaaaaaaaaatgccaaagtgcttttcaatctagtaaatctagagggttgttttgtcttagccacaagaattccgaggtcttgaccctgatgatcaacctgcctcccctccatagtcttgttggagaagcccagagagaatgggactccaactaagggaacctgaaatcaactcaatggaggcacttcagagctaaaataattatggcttccttgcttaataaacattttcgttcactgcaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:139135 -> Molecular function: GO:0004871 [signal transducer activity] evidence: IEA
GeneID:139135 -> Cellular component: GO:0005634 [nucleus] evidence: IDA
by
@meso_cacase at
DBCLS
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