2024-04-26 02:19:51, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_152409 4896 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens chromosome 5 open reading frame 24 (C5orf24), transcript variant 2, mRNA. ACCESSION NM_152409 VERSION NM_152409.3 GI:207449709 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4896) AUTHORS Lamesch,P., Li,N., Milstein,S., Fan,C., Hao,T., Szabo,G., Hu,Z., Venkatesan,K., Bethel,G., Martin,P., Rogers,J., Lawlor,S., McLaren,S., Dricot,A., Borick,H., Cusick,M.E., Vandenhaute,J., Dunham,I., Hill,D.E. and Vidal,M. TITLE hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes JOURNAL Genomics 89 (3), 307-315 (2007) PUBMED 17207965 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from BC053677.1 and AC006077.1. On Oct 1, 2008 this sequence version replaced gi:40255110. Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data because no single transcript was available for the full length of the gene. The extent of this transcript is supported by transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BC053677.1, BU172095.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025095 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1840 BC053677.1 1-1840 1841-4896 AC006077.1 23842-26897 FEATURES Location/Qualifiers source 1..4896 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="5" /map="5q31.1" gene 1..4896 /gene="C5orf24" /note="chromosome 5 open reading frame 24" /db_xref="GeneID:134553" /db_xref="HGNC:26746" /db_xref="HPRD:08226" exon 1..58 /gene="C5orf24" /inference="alignment:Splign:1.39.8" variation 2 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:182184432" misc_feature 44..46 /gene="C5orf24" /note="upstream in-frame stop codon" exon 59..4896 /gene="C5orf24" /inference="alignment:Splign:1.39.8" CDS 62..628 /gene="C5orf24" /codon_start=1 /product="UPF0461 protein C5orf24" /protein_id="NP_689622.2" /db_xref="GI:40255111" /db_xref="CCDS:CCDS4179.1" /db_xref="GeneID:134553" /db_xref="HGNC:26746" /db_xref="HPRD:08226" /translation="
MMHPVASSNPAFCGPGKPSCLNEDAMRAADQFDIYSSQQSKYSHTVNHKPMVCQRQDPLNETHLQTTSGRSIEIKDELKKKKNLNRSGKRGRPSGTTKSAGYRTSTGRPLGTTKAAGFKTSPGRPLGTTKAAGYKVSPGRPPGSIKALSRLADLGYGCGTAAFPYPMMHGRAVHGVEETSSEVKPPNE
" misc_feature 170..172 /gene="C5orf24" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (Q7Z6I8.1); phosphorylation site" misc_feature 170..172 /gene="C5orf24" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" variation 69 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:182827108" variation 137 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:144977700" variation 184 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:368441862" variation 186 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:76797142" variation 188 /gene="C5orf24" /replace="a" /replace="t" /db_xref="dbSNP:372418986" variation 198 /gene="C5orf24" /replace="g" /replace="t" /db_xref="dbSNP:373302777" variation 203 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:189210384" variation 250 /gene="C5orf24" /replace="c" /replace="g" /db_xref="dbSNP:376967674" variation 268 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:138898204" variation 320 /gene="C5orf24" /replace="a" /replace="t" /db_xref="dbSNP:142019018" variation 343 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:146323904" variation 389 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:368128995" variation 437 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:148188988" variation 463 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:141164760" variation 478 /gene="C5orf24" /replace="c" /replace="g" /db_xref="dbSNP:193092391" variation 491 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:375925184" variation 509 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:199887798" variation 560 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:369059533" variation 578 /gene="C5orf24" /replace="g" /replace="t" /db_xref="dbSNP:150693644" variation 581 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:139980444" variation 585 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:150797739" variation 592 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:145067433" variation 613 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:75692562" variation 621 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:140427240" variation 670 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:368013222" variation 675 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:371433307" variation 681 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:139222825" variation 683 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:143589903" variation 691 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:184484229" variation 907 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:147194284" variation 925 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:187459204" variation 953 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:191834107" variation 1088..1093 /gene="C5orf24" /replace="" /replace="gtaaca" /db_xref="dbSNP:368150166" variation 1088 /gene="C5orf24" /replace="g" /replace="t" /db_xref="dbSNP:202016249" variation 1164 /gene="C5orf24" /replace="g" /replace="t" /db_xref="dbSNP:184054742" variation 1326 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:376746765" variation 1380 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:113314814" variation 1449 /gene="C5orf24" /replace="g" /replace="t" /db_xref="dbSNP:188596864" variation 1739 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:112436387" variation 1802..1813 /gene="C5orf24" /replace="" /replace="aaataaataaat" /db_xref="dbSNP:144902250" variation 1802..1805 /gene="C5orf24" /replace="" /replace="aaat" /db_xref="dbSNP:202226698" variation 1813..1816 /gene="C5orf24" /replace="" /replace="taaa" /db_xref="dbSNP:10552008" variation 1835 /gene="C5orf24" /replace="" /replace="ataa" /db_xref="dbSNP:72322633" variation 1841 /gene="C5orf24" /replace="" /replace="taaa" /db_xref="dbSNP:61626616" variation 1844 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:181710725" variation 1907 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:185140929" variation 1941 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:112492801" variation 1955 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:190830022" variation 2004 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:181935929" variation 2132 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:144737830" variation 2159 /gene="C5orf24" /replace="g" /replace="t" /db_xref="dbSNP:186132693" variation 2514 /gene="C5orf24" /replace="g" /replace="t" /db_xref="dbSNP:78987868" misc_feature 2518..2592 /gene="C5orf24" /note="GRAIL 2 excellent exon, frame 2" variation 2533 /gene="C5orf24" /replace="c" /replace="g" /db_xref="dbSNP:373114001" variation 2610 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:377231492" variation 2635 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:115396590" variation 2658 /gene="C5orf24" /replace="a" /replace="t" /db_xref="dbSNP:145780106" variation 2794 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:114887018" prim_transcript join(2890..3299,3200..3477) /gene="C5orf24" /standard_name="af70g12" /note="99% entity EST dbEST:AA625228" variation 2945 /gene="C5orf24" /replace="a" /replace="t" /db_xref="dbSNP:148502660" variation 2955 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:116661206" variation 3019 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:189595352" variation 3181 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:180750598" variation 3209 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:367598207" variation 3283 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:80346634" variation 3292 /gene="C5orf24" /replace="a" /replace="t" /db_xref="dbSNP:118050206" variation 3379 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:374934904" variation 3433 /gene="C5orf24" /replace="a" /replace="t" /db_xref="dbSNP:185600585" variation 3566 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:190060727" variation 3823 /gene="C5orf24" /replace="g" /replace="t" /db_xref="dbSNP:113157441" variation 3920 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:151105359" STS 3955..4124 /gene="C5orf24" /standard_name="SHGC-64770" /db_xref="UniSTS:184206" variation 4023 /gene="C5orf24" /replace="a" /replace="t" /db_xref="dbSNP:15236" variation 4029 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:112372759" variation 4084 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:17695346" variation 4136 /gene="C5orf24" /replace="c" /replace="t" /db_xref="dbSNP:145093735" variation 4240 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:4418145" variation 4241 /gene="C5orf24" /replace="c" /replace="g" /db_xref="dbSNP:371291842" variation 4303 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:5028926" variation 4305 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:5028927" variation 4308 /gene="C5orf24" /replace="a" /replace="t" /db_xref="dbSNP:5028928" variation 4319 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:62380022" variation 4321 /gene="C5orf24" /replace="a" /replace="t" /db_xref="dbSNP:140681325" variation 4324 /gene="C5orf24" /replace="g" /replace="t" /db_xref="dbSNP:5028929" STS 4618..4759 /gene="C5orf24" /standard_name="A007F30" /db_xref="UniSTS:63148" variation 4670 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:11553310" STS 4674..4799 /gene="C5orf24" /standard_name="RH47430" /db_xref="UniSTS:24779" variation 4704 /gene="C5orf24" /replace="a" /replace="c" /db_xref="dbSNP:3200480" variation 4708 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:144649531" variation 4780 /gene="C5orf24" /replace="a" /replace="g" /db_xref="dbSNP:35694512" variation 4795 /gene="C5orf24" /replace="a" /replace="t" /db_xref="dbSNP:11553311" ORIGIN
aagaaatggggtcagcaggagttccagcatctcagaattgtggtgaaaaccaatacaaaaaatgatgcatcctgttgccagcagtaatccagctttctgtgggcctggcaagccttcctgcctcaatgaagatgccatgagagctgctgatcagtttgacatatattcctcccagcaaagcaaatacagccacacagtcaaccacaaaccaatggtttgtcagaggcaagacccattaaatgaaacacacttgcagactacaagtggcagaagcatagaaataaaagatgaactaaagaaaaagaagaatctcaaccgatctggtaagcgtggccggccttcgggaaccaccaaatcagcaggataccggaccagcacaggcagacccctgggaaccaccaaagcagctggatttaagacaagtccaggcagacctttggggacaactaaagctgcgggatacaaagtcagcccaggcagacctccaggtagcattaaagctctatcccgtcttgccgatcttggttatggctgtggcactgctgcttttccttaccctatgatgcatggcagagcagttcatggggtagaggaaactagcagtgaagtcaaaccacccaatgagtgaatgaggcaggaaaagagggccaggtttagaaggaagattgtgaataatcccaaagcttcttggttttattttgatatacataattttatggcctgggctttccaaatttgttttcctgtttggtttttttcctgcttttgctcaaaaactgccatatgctgacagatgcactcagggcatgagcagcggcattgtatttgtacataggttcaagtgtaacacctaactaaatcatttttccttttcctttagagttatggtcatgtctcatgtttcattactactttggggctgttctaaatagatgctttatgtgataaacaactgaaaccattatacctattagtttgtgaagtaagcctacagtataataaagacactaacgtatttttaactgatggagcaaaaaagcaaactaatgaatcaggattacttgaggtaatggctgtgtgagtttttgtaacatttattttcacaagatgggacacatatttgtatgctttggcatttacatccacttcaaatgttaaaaaacttatttttaatgttttaggtttaagcagcttgtaatttattgatctacatggcattaattgatttaaccattatacctgaaataattcttcagtgtttgcctttgagcagtgataggttgtgtattttttaattgcctaagagcatatataccaaacactacaaacaattcatatttacagaaaatttaaactattttataaaaactgcacattacatttttggtgaaatatagtgcattctgaggatagcatatttcatataatagaaaaagaagcattctctaggtttgcatgtagctatagtcactatattttgcctttcatatagaaagttttaaagtattatgtttaaaaacatttattggctgggtgtggtggctcacacccagcactttgggaggccgaggcaggcggatcacttgaggtcagcagttcaagactagcctggccaacatggtgaaaccccatctctactaaaaatataaaaattagccaggcgtggtggcgggcgcctgtaatccaagctactggggaggctgaggcaggagaattgcttaaatccaggaggcggaggttgcagtgagccaagattgtgccactgcactccagcctgggtgacagagtaagactccgtctcaaataaataaataaataaataaataaataaataaataaataaaaccatttattgatgttgctcatttatttggaacgtttttagtttttctcagaaattgtcccattgcattagcacttactgtgttttcaggttgatatctaccaaaggacacaaattgaatggtagactgtaaaactggtataaacagaatgcagtttcccgaccatcagaacccaaatattaagaagcatataggaatccatctatgcatgaaacatgtaaaaaatatgttggttagtttaattaaaaatcttattgtgggtccagtgagaccatctcatccaaaagattttttttcccccaatgatgtttgctttagaagcaagatagaaaggaaaaaaagtattaggtagatatgtatagtagggacagagggaaatctttcttctttcctttctgaaagtaatacttcttgttacacattttatttattgagtttgttctaaataaaatattataaacttcagacttgaaaaaattccacttaactttaaagttacaatgtttgtatttgggattttaaatgcctttgagattaaaatgtagaattgcaggacccaaaaacttttaaaataattaaaattttaaaagagcacatgttgtgttttttgggcttgctattaatgcaaactctgattgcaaatggatgtcatgtttcataccttttttatcaggaaaaaagcagcaagccttcaggtgttccagtgatgcctgacacaattgagctggactttatgctgctctttacagtaagaggtgttgcattgtatgtggggactatgtgcactggcgtctaagacagtgacctcaacaatattagctttgcacaaaccatagagaacgatgttggatggttacataatcagttataacattctggcagctaaattgctacaagagctttttcttgcaaaagcttaaaatacaagatttttaataatttactcagaacagtataacttctgacacacacaaatgcttgcctctttattcatatgttcgttacctactctgtacatgtatctgtcatttagctgtttctcaagatgatgttcagcagttggctgcttagaaatctttttcaagccagtttctaaagacatttgtttaatgttctaccatagaataatgcacaccattgtcaaagatttgattattgtgttttatagtaagtccatttgacatttatttccctttcagtttattttccttccttattttgttatacatacccttccctttctcccctgcctttcgtacattcattcctcttcctctaccctccagcacatctacttactggtgctgtgctgtgtgtcagaagataaaacaggtgtattattgtataatgaattttgtatacatgtttatgaaatggtgagatcaactaaaggaggcatgttcataacagtgtttattatcagcagctatgtcccaggaaaaaaaaatgggaggggcaaatggctacagttgtaaatggataacatcatttagaaagccgaatttactgttcatctgagcggttacctggagtattatatctatgcactggtgagcatctcctgattccacttacttttctccctgtgaacagtttaccggtgccatgctgaagagaaagacatctaagtgataacatgaatgaagtcttaaaatttaaagtatttttactgctatataaactaaagactacattgtgcatattttgttaacactgtctcttgttatgataaacactgaaatagcatgttaaacagttgcctatactttaatataatcagttggggaaaactggccttttctcccccactgtatgattgtttcttgaaaggtaaattgctaattttatacagtgtaattctgttcttcacaaaataggtttcattattctatatttaaactgttggtcagaaaatgatctgcaattcaagtaagtctgcattacttttttctttaaaaagtactttaacatgccttatttattatattagcaaatgagctaataacagatgaaattttcattttttgacagatataaccttgcataagtagtatttagggtgattttgatactatctttagagttttgcattggatattaaaaaatatattggcacaatgtattggaagaaaatgagtagtatctggtttaatttttaatatttagggacattttaaaaaatcaatgttttaattagactaaaaattctttatattttttatttactttttaaagaaacatctgtcaaagtaatattgattccaaactgatgtttgtgtgaatttacatgtctattttcatgaactaagaatagagtttctttgagttgaggagaaaaaaatatatatgtgggtccatttattaggttaaagttgacccattcagtgtaaaaataaccatagtgtgtgagctaaagaaaaaaaaaagtaaatttctcctttatattctaagaagctttaaaagaacaattcaggggttattgataactgctactctgtcggtcattgtctctatatgcagtaaaattttatggtccctttataggaatataaagaattcaaaacagtttttcaaaagatttttttccttggacataaaaaattttgatgctattctatttttgtttttattacagcttaactgtatgctgttaaactctaggatgtatctgaatctttccttttttcccccctcctccaaatatataaatctgtgctctcacatgtaatgtatttaatttttggaaaatttaatgctatatagtaaatcaagtgtgtgatttaaagtaatcagatcactttgattcttttaagttttcagaatttcttttttccacaggtaattttggagaaaataattaccaattaactgataataagcacgctgtcctctgctgtaaaaagtctgaatagatactgtgtatgtttttatgtccatgaacttgagctactcgtgtgcaattatgtgtatgggaatggagtagtgttcatgatttgtatctacatcatcatatggatgtatatttattaataaagtcattactttaaaacca
//
by
@meso_cacase at
DBCLS
This page is licensed under a Creative Commons Attribution 2.1 Japan License.