2024-03-29 18:59:15, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_152352 4252 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens family with sequence similarity 210, member A (FAM210A), transcript variant 2, mRNA. ACCESSION NM_152352 VERSION NM_152352.3 GI:149408151 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 4252) AUTHORS Estrada,K., Styrkarsdottir,U., Evangelou,E., Hsu,Y.H., Duncan,E.L., Ntzani,E.E., Oei,L., Albagha,O.M., Amin,N., Kemp,J.P., Koller,D.L., Li,G., Liu,C.T., Minster,R.L., Moayyeri,A., Vandenput,L., Willner,D., Xiao,S.M., Yerges-Armstrong,L.M., Zheng,H.F., Alonso,N., Eriksson,J., Kammerer,C.M., Kaptoge,S.K., Leo,P.J., Thorleifsson,G., Wilson,S.G., Wilson,J.F., Aalto,V., Alen,M., Aragaki,A.K., Aspelund,T., Center,J.R., Dailiana,Z., Duggan,D.J., Garcia,M., Garcia-Giralt,N., Giroux,S., Hallmans,G., Hocking,L.J., Husted,L.B., Jameson,K.A., Khusainova,R., Kim,G.S., Kooperberg,C., Koromila,T., Kruk,M., Laaksonen,M., Lacroix,A.Z., Lee,S.H., Leung,P.C., Lewis,J.R., Masi,L., Mencej-Bedrac,S., Nguyen,T.V., Nogues,X., Patel,M.S., Prezelj,J., Rose,L.M., Scollen,S., Siggeirsdottir,K., Smith,A.V., Svensson,O., Trompet,S., Trummer,O., van Schoor,N.M., Woo,J., Zhu,K., Balcells,S., Brandi,M.L., Buckley,B.M., Cheng,S., Christiansen,C., Cooper,C., Dedoussis,G., Ford,I., Frost,M., Goltzman,D., Gonzalez-Macias,J., Kahonen,M., Karlsson,M., Khusnutdinova,E., Koh,J.M., Kollia,P., Langdahl,B.L., Leslie,W.D., Lips,P., Ljunggren,O., Lorenc,R.S., Marc,J., Mellstrom,D., Obermayer-Pietsch,B., Olmos,J.M., Pettersson-Kymmer,U., Reid,D.M., Riancho,J.A., Ridker,P.M., Rousseau,F., Slagboom,P.E., Tang,N.L., Urreizti,R., Van Hul,W., Viikari,J., Zarrabeitia,M.T., Aulchenko,Y.S., Castano-Betancourt,M., Grundberg,E., Herrera,L., Ingvarsson,T., Johannsdottir,H., Kwan,T., Li,R., Luben,R., Medina-Gomez,C., Palsson,S.T., Reppe,S., Rotter,J.I., Sigurdsson,G., van Meurs,J.B., Verlaan,D., Williams,F.M., Wood,A.R., Zhou,Y., Gautvik,K.M., Pastinen,T., Raychaudhuri,S., Cauley,J.A., Chasman,D.I., Clark,G.R., Cummings,S.R., Danoy,P., Dennison,E.M., Eastell,R., Eisman,J.A., Gudnason,V., Hofman,A., Jackson,R.D., Jones,G., Jukema,J.W., Khaw,K.T., Lehtimaki,T., Liu,Y., Lorentzon,M., McCloskey,E., Mitchell,B.D., Nandakumar,K., Nicholson,G.C., Oostra,B.A., Peacock,M., Pols,H.A., Prince,R.L., Raitakari,O., Reid,I.R., Robbins,J., Sambrook,P.N., Sham,P.C., Shuldiner,A.R., Tylavsky,F.A., van Duijn,C.M., Wareham,N.J., Cupples,L.A., Econs,M.J., Evans,D.M., Harris,T.B., Kung,A.W., Psaty,B.M., Reeve,J., Spector,T.D., Streeten,E.A., Zillikens,M.C., Thorsteinsdottir,U., Ohlsson,C., Karasik,D., Richards,J.B., Brown,M.A., Stefansson,K., Uitterlinden,A.G., Ralston,S.H., Ioannidis,J.P., Kiel,D.P. and Rivadeneira,F. TITLE Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture JOURNAL Nat. Genet. 44 (5), 491-501 (2012) PUBMED 22504420 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4252) AUTHORS Hendrickson,S.L., Lautenberger,J.A., Chinn,L.W., Malasky,M., Sezgin,E., Kingsley,L.A., Goedert,J.J., Kirk,G.D., Gomperts,E.D., Buchbinder,S.P., Troyer,J.L. and O'Brien,S.J. TITLE Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression JOURNAL PLoS ONE 5 (9), E12862 (2010) PUBMED 20877624 REMARK GeneRIF: Observational study of gene-disease association. (HuGE Navigator) Publication Status: Online-Only COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DA573992.1, DA895646.1, BU189118.1, AP001010.4 and AA602175.1. On Jun 22, 2007 this sequence version replaced gi:116268104. Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein. Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: BI757783.1, BI764842.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025088 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-151 DA573992.1 1-151 152-600 DA895646.1 122-570 601-995 BU189118.1 188-582 996-4011 AP001010.4 168773-171788 c 4012-4252 AA602175.1 1-241 c FEATURES Location/Qualifiers source 1..4252 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="18" /map="18p11.21" gene 1..4252 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /note="family with sequence similarity 210, member A" /db_xref="GeneID:125228" /db_xref="HGNC:28346" exon 1..264 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /inference="alignment:Splign:1.39.8" exon 265..765 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /inference="alignment:Splign:1.39.8" misc_feature 269..271 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /note="upstream in-frame stop codon" CDS 293..1111 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /note="uncharacterized protein C18orf19" /codon_start=1 /product="protein FAM210A" /protein_id="NP_689565.2" /db_xref="GI:116268105" /db_xref="CCDS:CCDS11866.1" /db_xref="GeneID:125228" /db_xref="HGNC:28346" /translation="
MQWNVPRTVSRLARRTCLEPHNAGLFGHCQNVKGPLLLYNAESKVVLVQGPQKQWLHLSAAQCVAKERRPLDAHPPQPGVLRHKQGKQHVSFRRVFSSSATAQGTPEKKEEPDPLQDKSISLYQRFKKTFRQYGKVLIPVHLITSGVWFGTFYYAALKGVNVVPFLELIGLPDSVVSILKNSQSGNALTAYALFKIATPARYTVTLGGTSVTVKYLRSHGYMSTPPPVKEYLQDRMEETKELITEKMEETKDRLTEKLQETKEKVSFKKKVE
" misc_feature 662..922 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /note="Protein of unknown function (DUF1279); Region: DUF1279; pfam06916" /db_xref="CDD:191640" misc_feature 698..760 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96ND0.2); transmembrane region" variation 407 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /replace="a" /replace="t" /db_xref="dbSNP:35493157" variation 619 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /replace="a" /replace="g" /db_xref="dbSNP:34798758" exon 766..877 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /inference="alignment:Splign:1.39.8" variation 791 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /replace="a" /replace="g" /db_xref="dbSNP:2847146" exon 878..4244 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /inference="alignment:Splign:1.39.8" variation 988 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /replace="g" /replace="t" /db_xref="dbSNP:35023957" STS 1553..1728 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="RH80402" /db_xref="UniSTS:90298" STS 1605..1801 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="STS-T67088" /db_xref="UniSTS:82091" STS 1782..1872 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="D18S1228" /db_xref="UniSTS:11696" polyA_signal 1895..1900 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" polyA_site 1925 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" STS 2253..2442 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="ECD04345" /db_xref="UniSTS:285422" STS 2266..3900 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="D1S1423" /db_xref="UniSTS:149619" STS 2266..2452 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="D1S1423" /db_xref="UniSTS:149619" STS 2898..3020 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="RH65191" /db_xref="UniSTS:13038" STS 2903..3054 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="SHGC-53804" /db_xref="UniSTS:28526" variation 3988 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /replace="a" /replace="g" /db_xref="dbSNP:1047427" STS 4084..4212 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" /standard_name="SHGC-31363" /db_xref="UniSTS:35822" polyA_signal 4220..4225 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" polyA_site 4244 /gene="FAM210A" /gene_synonym="C18orf19; HsT2329" ORIGIN
aactacgagtcccgacgtgccgcgcgcggcatgcagaagcttcactgagcgggcactggaggtcgcgagcacgttgctagtgggcgcggctggcggggccgggggcggcagggggctagcgtccggctgagcccggcgggttcctgcacgcggacccacgctttgtcgggctgctctgctgagtgacaccgccgtggcatccgaggagctgtggtccagcctgcgcggcgggaagcggcggcggcggctccagcgtcctaagagaagctgaaacctatcaacactcttcaaaatgcaatggaatgtaccacggactgtatctcgactggcacgcaggacatgcttggaaccacataatgctggtctctttggacactgtcaaaatgtaaagggacctttacttttatacaatgctgaatccaaagtggttttggtacaaggccctcaaaaacaatggttgcatttatctgctgcccagtgtgttgcaaaggaaaggaggccattggatgctcatccaccccaaccaggagtccttcgccataagcaagggaagcaacatgtttcattcaggagggttttttcatccagtgccacagctcagggaactccggaaaaaaaggaagagcctgatcctttgcaagacaaatctattagtctttatcaacgattcaagaagacatttagacagtatggaaaagttctgattccagtgcatctaataacttctggtgtttggtttggaacattttattatgcagccttgaaaggagtgaatgtcgttccttttctagaactcattgggttacctgacagtgtggtaagcatcctgaaaaactcccagagtggaaatgccctcacagcatatgccttgtttaagattgcaacacctgctcggtataccgtgactttgggaggaacatctgtcactgtgaagtatctgcgcagtcatggctacatgtccacgccgccacccgtcaaggagtatctgcaggacaggatggaagagacaaaggagcttatcacagagaaaatggaagaaacaaaagatagactcactgaaaagttacaagaaaccaaagaaaaagtttcctttaagaaaaaagtggaataaggtgccttatatagcagtatagaaaattcctgcactttaaccctttggaaactatgggcaaagatacatgtgtctgattatttttttggttagttgccgaaatatactagttctctgagggttaaagaagtaaaatacctttttaaagttaaatatcactagaaaaatcagtgttattacaagggaagaaatgaacccagtttaagaatttgccatcagtagcagtattaagcagtggttaatgtcttagaagtcagacttctttttcaaggtcttcagaaccacacttgatttctgttttgttgcagctgtaattgacacatactaggcagctgactccttgaatatccagtgtgacccataaaatagtctgttaataccggatcttaatttttatgttattcattaagattttaactatattcagtacgtaatttggagacaaactagcatcatcaaaactgcctgtaaataaggtgtttagtctttctataaaaacagaatagagcagttacctaccagttaaaatatcttatatgaagaaaatagaataaagatccagtcatatatgtaaataagatgtactgattgtacgtaaatgaaaaatggaccctttaaaaattatttttacctgaagcttgtcataatttttttaaagcaaatatatatatggtgatggtacttttcaaagtgtgtattagtggtgatcacctcaaacataaacctctgttgtgaatcatttgtgtccttttcaactgtctttcagaggaaaggtaaaaaatcattaaaccttaaattcattgttaaaatcaaatatttgtcagcagtaactcaagctcatggttctcaagcagaaaaaggtttgggagactaaaaatggagtcaggttttcatggagactgctaactccttggggtagacatgggccttgcctcagcaaaccagtgcaatttcccaatgtcttagtttcagaattcatgctgatttcattatggagtaaagttttaaattgtggctgctgctttttgtcttacattgaagggaaatatccttgtttgagcattctacttgattttttttttttttttttttttttttgagacggagcctccctctctctctcccagactggagtgcaatggtacaatctcggctcactgcatcctctgcctcccaggttcaagtgatcctcccgcctcagctttccaagtagctgggagtataagcgtgtgccaccacactcagctaatttttgtatttttagtggaggtggagtttcaccatgttagccaggctagtctccaactcctgacctcagcctcccgagtagctgggactacaggcgcccaccaccacgcccagctaatttttttgtatttttagtagagatggggtttcaccatcttaacaaagctatcattaaatcatttgcttgtaatgaaattcagccgttgtcagctgtgagcgttgcggggctggtggggtgtgtttgagtatgtaagtgtctatttcctgtgctctaacagtgactatttcagttctaacccttcaattgctaattggatgagggaatggcctcttagattgtccttgttttgacttatctgctaaggcgagagaatgtctgggtttgccacacagtcccgcagggacccctgctctttgccaggatttttatatcaagtacttagtttggccaaatttagagtatagtttaaaggggaaaaaaagtttgtatttgatgagtctaattactatattagaatgctttttaaatgaatatgctgtgattggaatctcttcttgggggccggggagagtgctgagagatgcagctgtgtctctgctctctgcagtcttgggcaggcagcaccgctgtctcctgatacagagggttgaatgcactgcttcacattgatgccacattttcaaatctaaacatgattaacatgttttttaagtatttatcaaataattcacatttttgcaggtttaagtgctgttttttaagatattaaacatgttccttgtttcttttttctttttaaccactggagactatgtgaaaatcttgtgttatatggaatttttctaaaacaatttccttttacttttcatgttgcatattttccagtggggataaattggaggttcttattactaataatcctgaaactaaaatttgcttttcctgcatagacatcttttgttagtccatttgagttttgttgccatccagtttcatgatcatgttgtgttagtctaatagacaatgagttactgcttgaatgatatgaaattctctagtaaaaaatgctctgaagatgtgagaagctctgttgtattacttggcaccaggaatgttacaaaaatgttgttgctagcatattgctaacctagtccttaagtttcagggattcctgtaatatgttgagtttggagtattaatagcaggctaacagaatacagtaccaatatgccaagttaaataattgagaatatatacagtatagtttgctatgtataatagacctcatttcatttacagtacacctcacacttgggattaattcacctataacctctgtgaactgcgagtgctcggcagaagcagccctgtgtcttacatgtctacatttatatttatatttatatttatttttttgagacagagtctcactctgtcacccaggctagagtgcagtggcatgatcatagctcacttgcgtcttgaactcctggctcaagtgatcctcccacctcagcctgctgagtagctgggactacaggtgcacaccaccatgcctggctaaaggcatgtctgcatttatgcgaggtgtgttgaccgggtggggagggagctaggactgagattcgcctgtgtaaaatgcacaaaaagggtttgctaagcaaattgatatttgaaatgaaagatggattaggtgagagacttagtttattcaggaataagagcaaaaccaaccacatcaaaaaatgtatttcactgagacagccttttgtacatacagcagggtgctgtttacagatttcaagaaaggagaaaaagaatgcttatactgagattacctacctcccagtagtgaaaataataaatttatcccttgaaatataaaaaaaaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:125228 -> Cellular component: GO:0005739 [mitochondrion] evidence: IEA GeneID:125228 -> Cellular component: GO:0016021 [integral to membrane] evidence: IEA
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@meso_cacase at
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