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2024-03-29 07:19:22, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_139169               3412 bp    mRNA    linear   PRI 17-APR-2013
DEFINITION  Homo sapiens TruB pseudouridine (psi) synthase homolog 1 (E. coli)
            (TRUB1), mRNA.
ACCESSION   NM_139169
VERSION     NM_139169.4  GI:115583658
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3412)
  AUTHORS   Grupe,A., Li,Y., Rowland,C., Nowotny,P., Hinrichs,A.L., Smemo,S.,
            Kauwe,J.S., Maxwell,T.J., Cherny,S., Doil,L., Tacey,K., van
            Luchene,R., Myers,A., Wavrant-De Vrieze,F., Kaleem,M.,
            Hollingworth,P., Jehu,L., Foy,C., Archer,N., Hamilton,G.,
            Holmans,P., Morris,C.M., Catanese,J., Sninsky,J., White,T.J.,
            Powell,J., Hardy,J., O'Donovan,M., Lovestone,S., Jones,L.,
            Morris,J.C., Thal,L., Owen,M., Williams,J. and Goate,A.
  TITLE     A scan of chromosome 10 identifies a novel locus showing strong
            association with late-onset Alzheimer disease
  JOURNAL   Am. J. Hum. Genet. 78 (1), 78-88 (2006)
   PUBMED   16385451
  REMARK    GeneRIF: Observational study of gene-disease association. (HuGE
            Navigator)
REFERENCE   2  (bases 1 to 3412)
  AUTHORS   Deloukas,P., Earthrowl,M.E., Grafham,D.V., Rubenfield,M.,
            French,L., Steward,C.A., Sims,S.K., Jones,M.C., Searle,S.,
            Scott,C., Howe,K., Hunt,S.E., Andrews,T.D., Gilbert,J.G.,
            Swarbreck,D., Ashurst,J.L., Taylor,A., Battles,J., Bird,C.P.,
            Ainscough,R., Almeida,J.P., Ashwell,R.I., Ambrose,K.D.,
            Babbage,A.K., Bagguley,C.L., Bailey,J., Banerjee,R., Bates,K.,
            Beasley,H., Bray-Allen,S., Brown,A.J., Brown,J.Y., Burford,D.C.,
            Burrill,W., Burton,J., Cahill,P., Camire,D., Carter,N.P.,
            Chapman,J.C., Clark,S.Y., Clarke,G., Clee,C.M., Clegg,S., Corby,N.,
            Coulson,A., Dhami,P., Dutta,I., Dunn,M., Faulkner,L., Frankish,A.,
            Frankland,J.A., Garner,P., Garnett,J., Gribble,S., Griffiths,C.,
            Grocock,R., Gustafson,E., Hammond,S., Harley,J.L., Hart,E.,
            Heath,P.D., Ho,T.P., Hopkins,B., Horne,J., Howden,P.J., Huckle,E.,
            Hynds,C., Johnson,C., Johnson,D., Kana,A., Kay,M., Kimberley,A.M.,
            Kershaw,J.K., Kokkinaki,M., Laird,G.K., Lawlor,S., Lee,H.M.,
            Leongamornlert,D.A., Laird,G., Lloyd,C., Lloyd,D.M., Loveland,J.,
            Lovell,J., McLaren,S., McLay,K.E., McMurray,A.,
            Mashreghi-Mohammadi,M., Matthews,L., Milne,S., Nickerson,T.,
            Nguyen,M., Overton-Larty,E., Palmer,S.A., Pearce,A.V., Peck,A.I.,
            Pelan,S., Phillimore,B., Porter,K., Rice,C.M., Rogosin,A.,
            Ross,M.T., Sarafidou,T., Sehra,H.K., Shownkeen,R., Skuce,C.D.,
            Smith,M., Standring,L., Sycamore,N., Tester,J., Thorpe,A.,
            Torcasso,W., Tracey,A., Tromans,A., Tsolas,J., Wall,M., Walsh,J.,
            Wang,H., Weinstock,K., West,A.P., Willey,D.L., Whitehead,S.L.,
            Wilming,L., Wray,P.W., Young,L., Chen,Y., Lovering,R.C.,
            Moschonas,N.K., Siebert,R., Fechtel,K., Bentley,D., Durbin,R.,
            Hubbard,T., Doucette-Stamm,L., Beck,S., Smith,D.R. and Rogers,J.
  TITLE     The DNA sequence and comparative analysis of human chromosome 10
  JOURNAL   Nature 429 (6990), 375-381 (2004)
   PUBMED   15164054
REFERENCE   3  (bases 1 to 3412)
  AUTHORS   Zucchini,C., Strippoli,P., Biolchi,A., Solmi,R., Lenzi,L.,
            D'Addabbo,P., Carinci,P. and Valvassori,L.
  TITLE     The human TruB family of pseudouridine synthase genes, including
            the Dyskeratosis Congenita 1 gene and the novel member TRUB1
  JOURNAL   Int. J. Mol. Med. 11 (6), 697-704 (2003)
   PUBMED   12736709
  REMARK    GeneRIF: TRUB1 gene encodes a 349-amino acid product, with a
            VFAVHKPKGPTSA box in positions 71-83 corresponding to motif I of
            the TruB family
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC030601.2 and AL355340.17.
            On Oct 6, 2006 this sequence version replaced gi:34303921.
            
            Summary: Pseudouridine is an abundant component of rRNAs and tRNAs
            and is enzymatically generated by isomerization of uridine by
            pseudouridine synthase (Zucchini et al., 2003 [PubMed
            12736709]).[supplied by OMIM, Mar 2008].
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC030601.2, BX648709.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           ERS025081, ERS025082 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1218              BC030601.2         1-1218
            1219-3412           AL355340.17        61393-63586
FEATURES             Location/Qualifiers
     source          1..3412
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="10"
                     /map="10q25.3"
     gene            1..3412
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /note="TruB pseudouridine (psi) synthase homolog 1 (E.
                     coli)"
                     /db_xref="GeneID:142940"
                     /db_xref="HGNC:16060"
                     /db_xref="HPRD:18229"
                     /db_xref="MIM:610726"
     exon            1..347
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /inference="alignment:Splign:1.39.8"
     variation       9
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:17092618"
     variation       19
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200809062"
     variation       31
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:376743642"
     variation       32
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:377402974"
     variation       52
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369362278"
     variation       55
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:183399437"
     CDS             62..1111
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /codon_start=1
                     /product="probable tRNA pseudouridine synthase 1"
                     /protein_id="NP_631908.1"
                     /db_xref="GI:21040257"
                     /db_xref="CCDS:CCDS7591.1"
                     /db_xref="GeneID:142940"
                     /db_xref="HGNC:16060"
                     /db_xref="HPRD:18229"
                     /db_xref="MIM:610726"
                     /translation="
MAASEAAVVSSPSLKTDTSPVLETAGTVAAMAATPSARAAAAVVAAAARTGSEARVSKAALATKLLSLSGVFAVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWTKRKKQTLKIGHGGTLDSAARGVLVVGIGSGTKMLTSMLSGSKRYTAIGELGKATDTLDSTGRVTEEKPYDKITQEDIEGILQKFTGNIMQVPPLYSALKKDGQRLSTLMKRGEVVEAKPARPVTVYSISLQKFQPPFFTLDVECGGGFYIRSLVSDIGKELSSCANVLELTRTKQGPFTLEEHALPEDKWTIDDIAQSLEHCSSLFPAELALKKSKPESNEQVLSCEYITLNEPKREDDVIKTC
"
     misc_feature    65..67
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="N-acetylalanine; propagated from
                     UniProtKB/Swiss-Prot (Q8WWH5.1); acetylation site"
     misc_feature    92..94
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q8WWH5.1); phosphorylation site"
     misc_feature    269..1066
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /note="Pseudouridine synthase homolog 4; Region:
                     PseudoU_synth_TruB_4; cd02867"
                     /db_xref="CDD:211344"
     misc_feature    order(413..424,827..829)
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /note="probable active site [active]"
                     /db_xref="CDD:211344"
     variation       62
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146924418"
     variation       76
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:377229377"
     variation       78
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:138212899"
     variation       82
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:368115884"
     variation       92
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375548422"
     variation       161
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:199739741"
     variation       191
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:188026576"
     STS             233..328
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /standard_name="RH68108"
                     /db_xref="UniSTS:84146"
     variation       234
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:143711955"
     variation       304
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:147199437"
     variation       313
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148245314"
     exon            348..446
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /inference="alignment:Splign:1.39.8"
     variation       369
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:34393297"
     variation       381
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376430991"
     variation       406
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:150643238"
     variation       412
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:139727062"
     variation       416
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:202132205"
     variation       427
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:371039652"
     variation       428
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:375030980"
     variation       434
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:189510806"
     variation       435
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:143607039"
     variation       439
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:1131811"
     variation       443..444
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:34116071"
     exon            447..502
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /inference="alignment:Splign:1.39.8"
     variation       453
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:368095059"
     variation       456
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201362858"
     variation       463
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375820754"
     variation       466
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:371593499"
     variation       468
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:376693502"
     variation       482
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146297259"
     variation       495
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:139774976"
     exon            503..584
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /inference="alignment:Splign:1.39.8"
     variation       508
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:144505234"
     variation       514
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:145375733"
     variation       516
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:62623677"
     variation       523
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:142380152"
     variation       543
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:151175881"
     variation       561
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:7099565"
     variation       565
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146939314"
     variation       584
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:199581186"
     exon            585..657
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /inference="alignment:Splign:1.39.8"
     variation       595..598
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace=""
                     /replace="acaa"
                     /db_xref="dbSNP:201689682"
     variation       617
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:11197015"
     variation       646
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:147555998"
     variation       651
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201705910"
     variation       652
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:373067863"
     variation       655
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:201867346"
     exon            658..797
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /inference="alignment:Splign:1.39.8"
     variation       707
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:142313108"
     variation       718
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:143407028"
     variation       762
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:146130194"
     variation       778
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:138623005"
     exon            798..854
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /inference="alignment:Splign:1.39.8"
     exon            855..3412
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /inference="alignment:Splign:1.39.8"
     variation       867
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:202210924"
     variation       873
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:149298330"
     variation       890
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:143535613"
     variation       912
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:148334005"
     variation       924
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200488905"
     variation       961
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374264127"
     variation       1008
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200067972"
     variation       1051
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:377553612"
     variation       1066
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:113807137"
     variation       1104
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:370759585"
     variation       1105
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:76828769"
     variation       1112
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:188877724"
     variation       1117
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:373579925"
     variation       1128
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:367763476"
     variation       1208
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace=""
                     /replace="t"
                     /db_xref="dbSNP:35714321"
     variation       1246
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369521836"
     variation       1275
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:116249739"
     polyA_signal    1281..1286
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
     polyA_site      1305
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
     variation       1314
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:7071789"
     variation       1395
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:111283639"
     variation       1454
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:149219476"
     variation       1468
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:79799745"
     STS             1512..1638
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /standard_name="RH66196"
                     /db_xref="UniSTS:81484"
     variation       1531
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:111561407"
     variation       1634
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:143216263"
     variation       1667
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:370893108"
     variation       1792
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148296541"
     variation       1803
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:371358824"
     variation       1968..1969
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace=""
                     /replace="at"
                     /replace="ta"
                     /db_xref="dbSNP:10674304"
     variation       1969..1970
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace=""
                     /replace="at"
                     /db_xref="dbSNP:36121054"
     variation       1969
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:373685025"
     variation       1987
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:141439536"
     variation       2179
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:41317246"
     variation       2325
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:138352069"
     variation       2346
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:73372680"
     variation       2461
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:141707421"
     variation       2481..2482
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace=""
                     /replace="gttgaaatatgttagtg"
                     /db_xref="dbSNP:145705275"
     variation       2497..2498
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace=""
                     /replace="gttgaaatatgttagtg"
                     /db_xref="dbSNP:143426603"
     variation       2498..2499
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace=""
                     /replace="gttgaaatatgttagtg"
                     /db_xref="dbSNP:66546887"
     variation       2594
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:193223551"
     variation       2628
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375220059"
     variation       2863
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:376356913"
     variation       2870
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:184402076"
     variation       2873
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:78889955"
     variation       2909
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:41299149"
     variation       2958
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:1045657"
     variation       2991
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:57841310"
     variation       3027
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:367776095"
     STS             3127..3266
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /standard_name="A004M41"
                     /db_xref="UniSTS:7661"
     variation       3240
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:187694487"
     STS             3263..3353
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /standard_name="STS-Z39556"
                     /db_xref="UniSTS:24230"
     polyA_signal    3384..3389
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
     polyA_site      3408
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
     variation       3409
                     /gene="TRUB1"
                     /gene_synonym="PUS4"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:3177332"
ORIGIN      
gcactcttgttgcatcatcagcgtgcacctccacgatgaaacaggtctgggctacaaaagtatggccgcttctgaggcggcggtggtgtcttcgccgtctttgaaaacagacacatcccctgtccttgaaactgcaggaacggtcgcagcaatggctgcgaccccgtcagcaagggctgcagccgcggtggttgcggccgcggccaggaccggatccgaagccagggtctccaaggccgctttggctaccaagctgctgtccttgagcggcgtgttcgccgtgcacaagcccaaagggcccacttcagccgagctgctgaatcggttgaaggagaagctgctggcagaagctggaatgccttctccagaatggaccaagaggaaaaagcagactttgaaaattgggcatggagggactctagacagcgcagcccgaggagttctggttgttggaattggaagcggaacaaaaatgttgaccagtatgttgtcagggtccaagagatatactgccattggagaactggggaaagctactgatacactagattctacggggagggtaacagaagaaaaaccttacgataaaataacacaagaagatattgaaggcattctacagaaatttactggaaatataatgcaagtgccccccctctattctgcattaaagaaagatggacaaagactttcgactttgatgaagagaggtgaagtcgtagaagcaaaacctgccaggccagtgactgtatacagtatctcccttcaaaaattccagccaccatttttcacattagatgttgaatgtggaggaggtttttatatcagaagcttggtcagtgacattggaaaagaactatcttcctgtgccaatgtgctagagctgacccgaaccaaacagggaccatttacgctagaagaacatgcccttcctgaagacaaatggacaattgatgacattgcacagtctcttgagcattgctcatctcttttcccagcagagttggcacttaaaaaatcaaaacctgagtctaatgaacaggttttgagctgtgaatatataactctaaatgagccaaagagagaagatgatgtaattaagacgtgttgagattggcctgggaatatcatcattttctagttgacatttgaatcctgtgtgcagatgcagaatgacaagctgcattcaaaagacaaacaatatgtcttttttttttttgcatgaagaaaaatgtctatcatttacagtttcaatagcacataatttattttctatgcattataaatggccttgcagttggctcagttgtttgttgtgttgtgaaatgttttaggattttttgtattgtgaaaatatgaatatgattggattcagaaaaattaactttctgaatttgatctgtcttcagtcttgtgaaaaagttgaacaaatttcctaatcaaagaaaaaagtatgagctccatgtttctttagtttcacaaaaatgaccataatttagtgttatttttactttatttaggcttcctggtggcttcattttattgaaattctttaaattgtttaaagtggccattattgatctctttcttctgttttggagagtttattattaaaaacatttctttgataaaatggccatcatctagtaatacctgtgtttgtttagatcttggaaatgaataagctttgataatatttgtaaatgaaccaaattattactgctaccactaacaggttgtaaatagaagactaatacttaattaaagtcaccttcctaccattagagcagaagacagctcctatagttttgtattttggcagctatgagatattttcatggtaatgtcaacatggtcaagcactttgtaccaagttattaagtaacataatttttaaaatttaaagaatgtgtcttcaactaaaaactttattctttagcatttatttatatttctctgtagggtgttccctgtgacattgtctctttagtttgctctttcaagagatacttacagatgttgagatggctgccctgcatttccagctaatctcttctgctctaaatatttaaaaacagttcttctcaaacattttcattcagatagctttctgaaagttccctatccctctttaccataattttttaaatgtagccacattgtaatagtaaacttcatatataatgagtgcttcatatttttgttatgggaaagcaatatattatgcagccagtctgtagaaacattcagatccctcttcctttactcaaatacagtttcaaaaggaagactcatgagaaatttcataaaatacaagtttttagatgtttatgctttgcctttctttttaaaggtgttttcctgctttgtagtctctaactctgaaatttaaaatatgtaaactaaagtggttttatttgtgcttaacccaatttaaactcaatgtaaaatgttatatatgcatcagtacagcattttcaacatattggcaacatattttaaatgaaaacactaaaacaattcttagtatgagacaaaactgtaaggaaaaagagtgttaataccatgatgcattaacataaaatatcaaacacacaaagtcataaaatgaaaatttacagttttacctgttcatatctagtgccccacagtgtgtgtcaaccaaaggtggcagtggctacatctgcctgttggactggtacaggttacaatatgtcctcttccattgcaaattaaagtccaaatagagaaatacttaggttttagaacacatcagaggtatttctgctgtatttttcaccttaaaaattgacacagagtttactaatagaggagtagagattgttgaccatttttaaaaaacgatagccactctttttcttttatgtttaaaactgaagttttgccaaatgggaaaattactgttacctctaccatcttaatgtagtaactttagaatttaaatttttatattactattttcctttttgttgttcacatagtcttaaggcacctatacttttaaattgactttttcatttgatattatctatatgtatgtagttgtgataatgattattttaattatattactttatactcttaatttatttagagtatttctctattgctgaatacttaagtagttttaaattttattatgataaattcctgggagggggattatttagtgaaataatatgaagaactttatgacttatgtttgccttattgcattcccaaagagttgtaacattttacagtgttaccatttgagtaggggttttatatgttgttgctaatttagtaaacataggagagaaatcaaagtttttctgatttgcttttatgtgatttatctgtatactttgttcatttatataaataaatgtcttaatggtttctatacata
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:142940 -> Molecular function: GO:0003723 [RNA binding] evidence: IEA
            GeneID:142940 -> Molecular function: GO:0009982 [pseudouridine synthase activity] evidence: IEA
            GeneID:142940 -> Biological process: GO:0001522 [pseudouridine synthesis] evidence: IEA
            GeneID:142940 -> Biological process: GO:0008033 [tRNA processing] evidence: IEA

by @meso_cacase at DBCLS
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