2024-03-28 23:52:10, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_052848 3344 bp mRNA linear PRI 07-JUL-2013 DEFINITION Homo sapiens coiled-coil domain containing 97 (CCDC97), mRNA. ACCESSION NM_052848 VERSION NM_052848.1 GI:16418350 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3344) AUTHORS Guey LT, Garcia-Closas M, Murta-Nascimento C, Lloreta J, Palencia L, Kogevinas M, Rothman N, Vellalta G, Calle ML, Marenne G, Tardon A, Carrato A, Garcia-Closas R, Serra C, Silverman DT, Chanock S, Real FX and Malats N. CONSRTM EPICURO/Spanish Bladder Cancer Study investigators TITLE Genetic susceptibility to distinct bladder cancer subphenotypes JOURNAL Eur. Urol. 57 (2), 283-292 (2010) PUBMED 19692168 REMARK GeneRIF: Observational study of gene-disease association. (HuGE Navigator) COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC011577.1. ##Evidence-Data-START## Transcript exon combination :: BC011577.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025081, ERS025082 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3344 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="19" /map="19q13.2" gene 1..3344 /gene="CCDC97" /note="coiled-coil domain containing 97" /db_xref="GeneID:90324" /db_xref="HGNC:28289" /db_xref="HPRD:14467" exon 1..168 /gene="CCDC97" /inference="alignment:Splign:1.39.8" variation 1 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:183882962" variation 58 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:61747007" variation 72 /gene="CCDC97" /replace="a" /replace="c" /db_xref="dbSNP:368710855" variation 109 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:61740091" CDS 123..1154 /gene="CCDC97" /codon_start=1 /product="coiled-coil domain-containing protein 97" /protein_id="NP_443080.1" /db_xref="GI:16418351" /db_xref="CCDS:CCDS12578.1" /db_xref="GeneID:90324" /db_xref="HGNC:28289" /db_xref="HPRD:14467" /translation="
MEAVATATAAKEPDKGCIEPGPGHWGELSRTPVPSKPQDKVEAAEATPVALDSDTSGAENAAVSAMLHAVAASRLPVCSQQQGEPDLTEHEKVAILAQLYHEKPLVFLERFRTGLREEHLACFGHVRGDHRADFYCAEVARQGTARPRTLRTRLRNRRYAALRELIQGGEYFSDEQMRFRAPLLYEQYIGQYLTQEELSARTPTHQPPKPGSPGRPACPLSNLLLQSYEERELQQRLLQQQEEEEACLEEEEEEEDSDEEDQRSGKDSEAWVPDSEERLILREEFTSRMHQRFLDGKDGDFDYSTVDDNPDFDNLDIVARDEEERYFDEEEPEDAPSPELDGD
" misc_feature 261..263 /gene="CCDC97" /experiment="experimental evidence, no additional details recorded" /note="Phosphothreonine; propagated from UniProtKB/Swiss-Prot (Q96F63.1); phosphorylation site" misc_feature 612..>749 /gene="CCDC97" /note="Coiled-coil domain containing protein (DUF2052); Region: DUF2052; pfam09747" /db_xref="CDD:204303" misc_feature <918..1082 /gene="CCDC97" /note="Coiled-coil domain containing protein (DUF2052); Region: DUF2052; pfam09747" /db_xref="CDD:204303" misc_feature 945..947 /gene="CCDC97" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (Q96F63.1); phosphorylation site" misc_feature 1131..1133 /gene="CCDC97" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (Q96F63.1); phosphorylation site" misc_feature 1131..1133 /gene="CCDC97" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" variation 125 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:202074678" variation 131 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:138815567" variation 137..138 /gene="CCDC97" /replace="" /replace="acggcg" /db_xref="dbSNP:377515634" variation 137 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:201143753" variation 146 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:371317372" exon 169..624 /gene="CCDC97" /inference="alignment:Splign:1.39.8" variation 194 /gene="CCDC97" /replace="" /replace="c" /db_xref="dbSNP:34846366" variation 197 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:200037630" variation 211 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:200358934" variation 219 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:199551755" variation 221 /gene="CCDC97" /replace="a" /replace="c" /db_xref="dbSNP:145115154" variation 231 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:138920679" variation 296 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:149006709" variation 309 /gene="CCDC97" /replace="g" /replace="t" /db_xref="dbSNP:143841115" variation 326 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:377395901" variation 327 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:201218332" variation 335 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:373386903" variation 336 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:148083057" variation 337 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:138157924" variation 343 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:147264663" variation 382 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:377096486" variation 410 /gene="CCDC97" /replace="g" /replace="t" /db_xref="dbSNP:200453165" variation 419 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:368463774" variation 425 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:139158128" variation 435 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:376802126" variation 450 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:75624130" variation 451 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:199582362" variation 456 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:142783394" variation 459 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:368669358" variation 461 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:150772304" variation 468 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:201081145" variation 497 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:149083553" variation 498 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:375014029" variation 502 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:200401151" variation 506 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:149954618" variation 517 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:200711332" variation 543 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:144177246" variation 545 /gene="CCDC97" /replace="g" /replace="t" /db_xref="dbSNP:371814241" variation 547 /gene="CCDC97" /replace="a" /replace="t" /db_xref="dbSNP:376402988" variation 558 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:143157411" variation 560 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:201965455" variation 564 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:201767377" variation 569 /gene="CCDC97" /replace="c" /replace="g" /db_xref="dbSNP:374504882" variation 573 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:143186733" variation 579 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:140291750" variation 580 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:376499375" exon 625..903 /gene="CCDC97" /inference="alignment:Splign:1.39.8" variation 690 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:201959741" variation 695 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:369747565" variation 713 /gene="CCDC97" /replace="g" /replace="t" /db_xref="dbSNP:367901995" variation 718 /gene="CCDC97" /replace="c" /replace="g" /db_xref="dbSNP:200609121" variation 722 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:115805108" variation 725 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:151298239" variation 746 /gene="CCDC97" /replace="c" /replace="g" /db_xref="dbSNP:374433360" variation 748 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:377173036" variation 752 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:140569847" variation 753 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:376212276" variation 758 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:3745294" variation 761 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:150477178" variation 765 /gene="CCDC97" /replace="a" /replace="c" /db_xref="dbSNP:370690859" variation 779 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:372944406" variation 806 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:138340001" variation 836 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:377330475" variation 897 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:142324018" exon 904..1033 /gene="CCDC97" /inference="alignment:Splign:1.39.8" variation 916 /gene="CCDC97" /replace="g" /replace="t" /db_xref="dbSNP:146376772" variation 929 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:200306132" variation 935 /gene="CCDC97" /replace="g" /replace="t" /db_xref="dbSNP:374299134" variation 941 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:188335747" variation 951 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:368555031" variation 961 /gene="CCDC97" /replace="a" /replace="t" /db_xref="dbSNP:371069696" variation 962 /gene="CCDC97" /replace="a" /replace="c" /db_xref="dbSNP:374291353" variation 966 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:200959788" variation 984 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:200201804" variation 987 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:367824945" variation 997 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:372224178" variation 1017 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:377111574" exon 1034..3322 /gene="CCDC97" /inference="alignment:Splign:1.39.8" variation 1043 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:143105404" variation 1059 /gene="CCDC97" /replace="a" /replace="g" /replace="t" /db_xref="dbSNP:35135271" variation 1067 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:367678386" variation 1073 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:374346202" variation 1074 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:201740650" variation 1081 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:200507915" variation 1127 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:143731020" variation 1151 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:148029589" variation 1160 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:199680363" variation 1189 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:201969844" variation 1197 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:115799186" variation 1212 /gene="CCDC97" /replace="c" /replace="g" /db_xref="dbSNP:374173286" variation 1229 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:187996888" variation 1287 /gene="CCDC97" /replace="a" /replace="t" /db_xref="dbSNP:371298760" variation 1294 /gene="CCDC97" /replace="c" /replace="g" /db_xref="dbSNP:3810173" variation 1307 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:143835604" variation 1333 /gene="CCDC97" /replace="c" /replace="g" /db_xref="dbSNP:79896976" variation 1359 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:192497317" variation 1427 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:185328033" variation 1516 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:189816469" variation 1598 /gene="CCDC97" /replace="c" /replace="g" /db_xref="dbSNP:373940297" variation 1618 /gene="CCDC97" /replace="" /replace="g" /db_xref="dbSNP:35587298" variation 1695 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:372300436" variation 1726..1728 /gene="CCDC97" /replace="" /replace="ctt" /db_xref="dbSNP:375897465" variation 1751 /gene="CCDC97" /replace="a" /replace="t" /db_xref="dbSNP:192961107" variation 1760 /gene="CCDC97" /replace="c" /replace="g" /db_xref="dbSNP:146330354" variation 1805..1808 /gene="CCDC97" /replace="" /replace="gtct" /db_xref="dbSNP:371846519" variation 1813 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:139650824" variation 1843 /gene="CCDC97" /replace="c" /replace="g" /db_xref="dbSNP:2241720" variation 1937..1938 /gene="CCDC97" /replace="" /replace="g" /db_xref="dbSNP:34327670" variation 1991 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:75820821" variation 2035..2036 /gene="CCDC97" /replace="" /replace="g" /db_xref="dbSNP:35525566" variation 2115 /gene="CCDC97" /replace="a" /replace="t" /db_xref="dbSNP:2241719" variation 2140 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:2241718" variation 2222 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:184612357" variation 2227 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:9282870" variation 2241 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:188484237" variation 2288 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:180951246" variation 2353 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:116785413" variation 2438..2439 /gene="CCDC97" /replace="" /replace="ct" /db_xref="dbSNP:144441501" variation 2465 /gene="CCDC97" /replace="c" /replace="g" /db_xref="dbSNP:144300220" variation 2541..2565 /gene="CCDC97" /replace="" /replace="ctctgggtcaaccagaattagagcc" /db_xref="dbSNP:371928610" variation 2542 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:11555004" variation 2670 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:16959007" variation 2772 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:145153226" variation 2951 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:185069483" variation 2970 /gene="CCDC97" /replace="c" /replace="g" /db_xref="dbSNP:11668308" variation 2989 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:116628885" variation 2993 /gene="CCDC97" /replace="a" /replace="c" /db_xref="dbSNP:142205256" variation 3035 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:11555003" variation 3054 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:79057735" variation 3131 /gene="CCDC97" /replace="" /replace="g" /db_xref="dbSNP:71816054" variation 3140 /gene="CCDC97" /replace="a" /replace="g" /db_xref="dbSNP:6957" STS 3154..3285 /gene="CCDC97" /standard_name="WI-14864" /db_xref="UniSTS:19327" variation 3172..3175 /gene="CCDC97" /replace="" /replace="ctgt" /db_xref="dbSNP:147793830" variation 3237..3238 /gene="CCDC97" /replace="" /replace="a" /db_xref="dbSNP:36082857" variation 3277 /gene="CCDC97" /replace="c" /replace="t" /db_xref="dbSNP:11304" variation 3286 /gene="CCDC97" /replace="g" /replace="t" /db_xref="dbSNP:189479725" ORIGIN
gcctgggcgcagcggtgcacccggacccggaacattctcaggcgaaagtgtctcttgcgtgcgtgggccggaggttagtgtgcggggcccgccgggcggttgaaaagtccgagagaatcaggatggaggccgtggcgacggcgacggcggcgaaggaacccgataagggctgcatagagcctggacctgggcactggggtgagctgagccggacaccagtcccatctaaaccccaggacaaagtggaagcagctgaggcaacaccagtggccctggacagtgacacctccggggctgaaaatgcagcagtgagtgctatgctgcacgctgtagccgccagccgcctgcctgtttgcagccagcagcagggtgaacccgacttgacagagcatgagaaagtggccatcctggcccagctgtaccacgagaagccactggtgttcctggagcgcttccgcacaggcctccgtgaggagcatctggcctgctttggccacgtgcgtggcgaccaccgtgcagacttctactgtgctgaggtggcccggcagggcactgcccggccccgcaccctgcgtacccgcctgcgtaaccggcgctatgctgccctgcgagagctgatccaagggggcgagtacttcagtgatgagcagatgcggttccgggcccccctgctatatgagcagtacatcgggcagtatctcacccaggaggagctcagtgcccgcaccccaacccaccagccccccaagcccgggtcccccgggagacctgcttgcccgctctccaacttgctgctccagtcctacgaggagcgggagctacagcagcgtctgctccaacagcaggaggaggaggaggcctgcttggaggaagaggaagaggaggaggacagtgacgaggaagaccagaggtcaggcaaggactcggaggcctgggttcccgactcggaggagaggctgatcctgcgagaggagttcaccagccgcatgcaccagcgcttcctagatggcaaggacggggactttgactacagcacagtagacgacaaccccgacttcgacaacctcgacatcgtggcacgggatgaggaggagaggtactttgatgaggaagaacctgaggatgcgcccagcccagagctggatggggactgatggccgccacccttcccaccgcctgccccatccccatccccaacaaggcagctgattccaggcctgctcagtgaccctttctctagggggacatcagggcagtgccccacaacccacacacaccaccatctcactgggtctagtctcatctcagacaacccccacccccactgtttctggggttccctttctcatctctcccaccctgtctcctgcctctgtctttcttggtgtctgtctgggcttctttctgtctctttctgtctttctgtctctctccctacccccgctccctctttccagtgctctggctggctgtctctccctttctccccctctctctctgccttaggctctgtctccaccgcagggcccaaggtgaaagtcctccccttgccggaggccagctggcagggcctttcgtggctggaagtggccagtttggttccggtgctgacccctaggccccagcgcagctgcctcccgtgctgtctgtctccccctctctgtttatgtctgcgctgtgtctcacactcagagcctccttgcttctgttaggttcccatctctccttctgcctcactctgggcctcttctttctacttgtacatttccacctctctaggcctctgctctcactgtccctctctgtctgtctctcagcctttatctctgggttttgatcccccactccaggctctgggccccttcttcccccttccctcaaacctggctgctataggcagcagaaccctgaccactgagtaatacagccccaggggagggaggagaccccaggcagggaggatgggggcagctctcttctctccccaggacccaggctgtggatcacggggcctgccagcttgagtgtagagggaggggggactctacccttctcagccccaccagcccccctctgcccaaccacaattttcccttcctccgccttcctctccctctcctgtttacactccccaaatgcgcacaggctgttatcatgggtcctgagtcatcccacacacagcctgccccagcgtccctgcccccagctggccgcagggcccgccccatggagccccctgccgccctgggctaatgggagccagatggccgcctggtgactcagccaccgggcctgtgggaacccaggcgtcccgccttcccatgcccccacacccggctcctgctcccccagcagacacacacaggagggcctggccactgttgagggggcacacagggcaagggtcaccaagtcggggcctagggactcctcatgcctctgagatggaatggtggtatcctgccgtggccaagcctgaaggaccctcaaaactgcctcctggagtccacggttcctgacctccgagcctcagctatgccctctgggtcaaccagaattagagccagacagggaaagtgagagctggatggaggcagacaagatgctcagagcgactattaaagaacgaaagcctctgctacggagcgcttctgtcctctgtcaggcccgagcgaagtgcctgacaccgggttggatcctcagatggccccatgaactagtgaagtgggtcaaaggaggcctggaaagatgttgcttcctcaaggccactcggccatcagaggcagaaatgaaacaggaacccaggcctagaatcacaaaggtcctagaaaccacttggctgtctggcctctcaggtgtcagggccatccagagtgagacagcattggagggacaagtgtgcatgcagatgtcctcagacgggaaggtttgagaagggtcagatggtaggcgggcctaacaagggctccgtgctagccactgtcccgcacacagacaggatcaggtcatcttgatatggagatcagtccccaaatcactgaattgtcccagcagtgctatgccctaggtactaccaatatcactcctctatttcccagaggaggaagcagcagctagactccaggaccttggggtcatatctctcagaaagccaagagtgcaggatgagagctgtctgtctcttacctgcctgtatttgtgccccatttttaaagagcagagggcctgggccacaggaaaggtatcagcccttggtgataggcacattttttaccagtctatcatttggtcattaaatttgtttacaatatactttgctataaaaaaaaaaaaaaaaaaaaaaa
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