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2024-04-20 02:57:12, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_032862 2412 bp mRNA linear PRI 11-NOV-2012
DEFINITION Homo sapiens tigger transposable element derived 5 (TIGD5), mRNA.
ACCESSION NM_032862
VERSION NM_032862.4 GI:262050589
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2412)
AUTHORS Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
Makowski,K.A., Bosak,S. and Malek,J.
CONSRTM MGC Project Team
TITLE The status, quality, and expansion of the NIH full-length cDNA
project: the Mammalian Gene Collection (MGC)
JOURNAL Genome Res. 14 (10B), 2121-2127 (2004)
PUBMED 15489334
REMARK Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
Morin, Ryan]]
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. This record has been curated by NCBI staff in
collaboration with Hugh Robertson. The reference sequence was
derived from AC067930.7.
On Oct 24, 2009 this sequence version replaced gi:144922630.
Summary: The protein encoded by this gene belongs to the tigger
subfamily of the pogo superfamily of DNA-mediated transposons in
humans. These proteins are related to DNA transposons found in
fungi and nematodes, and more distantly to the Tc1 and mariner
transposases. They are also very similar to the major mammalian
centromere protein B. The exact function of this gene is not known.
[provided by RefSeq, Jul 2008].
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-2412 AC067930.7 136069-138480
FEATURES Location/Qualifiers
source 1..2412
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="8"
/map="8q24.3"
gene 1..2412
/gene="TIGD5"
/note="tigger transposable element derived 5"
/db_xref="GeneID:84948"
/db_xref="HGNC:18336"
exon 1..2412
/gene="TIGD5"
/inference="alignment:Splign:1.39.8"
CDS 1..1929
/gene="TIGD5"
/codon_start=1
/product="tigger transposable element-derived protein 5"
/protein_id="NP_116251.4"
/db_xref="GI:262050590"
/db_xref="CCDS:CCDS6406.2"
/db_xref="GeneID:84948"
/db_xref="HGNC:18336"
/translation="
MYPAGPPAGPVPRRGRRPLPGPPAPAPAPVPAARPPPPAPGPRPRVAVKMAFRKAYSIKDKLQAIERVKGGERQASVCRDFGVPGGTLRGWLKDEPKLRWFLEQLGGEVGTQRKKMRLANEEEIDRAVYAWFLALRQHGVPLSGPLIQAQAEAFARQIYGPECTFKASHGWFWRWQKRHGISSQRFYGEAGPPAPSPAPGPPVKEEPALPSGAGPLPDRAPAPPPPAEGGYGDEQIYSASVTGLYWKLLPEQAAPPGAGDPGAGGCGRRWRGDRVTVLLAANLTGSHKLKPLVIGRLPDPPSLRHHNQDKFPASYRYSPDAWLSRPLLRGWFFEEFVPGVKRYLRRSCLQQKAVLLVAHPPCPSPAASMPALDSEDAPVRCRPEPLGPPEELQTPDGAVRVLFLSKGSSRAHIPAPLEQGVVAAFKQLYKRELLRLAVSCASGSPLDFMRSFMLKDMLYLAGLSWDLVQAGSIERCWLLGLRAAFEPRPGEDSAGQPAQAEEAAEHSRVLSDLTHLAALAYKCLAPEEVAEWLHLDDDGGPPEGCREEVGPALPPAAPPAPASLPSAMGGGEDEEEATDYGGTSVPTAGEAVRGLETALRWLENQDPREVGPLRLVQLRSLISMARRLGGIGHTPAGPYDGV
"
misc_feature 157..306
/gene="TIGD5"
/note="Helix-turn-helix domains; Region: HTH; cl00088"
/db_xref="CDD:213080"
misc_feature 364..555
/gene="TIGD5"
/note="Tc5 transposase DNA-binding domain; Region:
HTH_Tnp_Tc5; pfam03221"
/db_xref="CDD:202576"
misc_feature 691..1431
/gene="TIGD5"
/note="Integrase core domain; Region: rve; cl01316"
/db_xref="CDD:207376"
variation 89
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:113399362"
variation 150
/gene="TIGD5"
/replace="g"
/replace="t"
/db_xref="dbSNP:113505643"
variation 153
/gene="TIGD5"
/replace="a"
/replace="c"
/db_xref="dbSNP:56326305"
variation 192
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:371701535"
variation 247
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:143950036"
variation 265
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:376276951"
variation 288
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:150713379"
variation 300
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:369540104"
variation 321
/gene="TIGD5"
/replace="a"
/replace="t"
/db_xref="dbSNP:372529199"
variation 417
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:139058897"
variation 784
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:141914327"
variation 852
/gene="TIGD5"
/replace="c"
/replace="g"
/db_xref="dbSNP:375208101"
variation 879
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:200439426"
variation 912
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:369731071"
variation 942
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:373464185"
variation 1011
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:185261954"
variation 1194
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:377236627"
variation 1238
/gene="TIGD5"
/replace="a"
/replace="t"
/db_xref="dbSNP:190137740"
variation 1258
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:369302359"
variation 1313
/gene="TIGD5"
/replace="a"
/replace="c"
/db_xref="dbSNP:202154228"
variation 1324
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:149895370"
variation 1348
/gene="TIGD5"
/replace="c"
/replace="g"
/db_xref="dbSNP:372825143"
variation 1368
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:377222684"
variation 1376
/gene="TIGD5"
/replace="a"
/replace="c"
/db_xref="dbSNP:201365774"
variation 1409
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:370572958"
variation 1418
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:374044512"
variation 1432
/gene="TIGD5"
/replace="c"
/replace="g"
/db_xref="dbSNP:377656208"
variation 1449
/gene="TIGD5"
/replace="g"
/replace="t"
/db_xref="dbSNP:371129163"
variation 1468
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:373871695"
variation 1490
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:201733245"
variation 1491
/gene="TIGD5"
/replace="g"
/replace="t"
/db_xref="dbSNP:35330772"
variation 1578
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:77619415"
variation 1626
/gene="TIGD5"
/replace=""
/replace="c"
/db_xref="dbSNP:34222544"
variation 1626
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:367695634"
variation 1641
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:58573550"
variation 1642
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:12547305"
variation 1692
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:373904830"
variation 1695
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:138051250"
variation 1704
/gene="TIGD5"
/replace="g"
/replace="t"
/db_xref="dbSNP:10282929"
variation 1717
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:149526728"
variation 1719
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:375071869"
variation 1735
/gene="TIGD5"
/replace="g"
/replace="t"
/db_xref="dbSNP:10282930"
variation 1774
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:75517188"
variation 1807
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:147833946"
variation 1905
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:141432344"
variation 1920
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:368341139"
variation 1924
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:181616828"
variation 1931
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:111956838"
variation 1955
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:73379054"
variation 1973
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:375539860"
STS 2154..2305
/gene="TIGD5"
/standard_name="RH65386"
/db_xref="UniSTS:34473"
variation 2162
/gene="TIGD5"
/replace="a"
/replace="g"
/db_xref="dbSNP:146036086"
variation 2211..2212
/gene="TIGD5"
/replace=""
/replace="t"
/db_xref="dbSNP:35608828"
variation 2238
/gene="TIGD5"
/replace="c"
/replace="g"
/db_xref="dbSNP:3210186"
variation 2278
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:139786888"
variation 2285
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:143174212"
variation 2316
/gene="TIGD5"
/replace="c"
/replace="g"
/db_xref="dbSNP:368624808"
variation 2355
/gene="TIGD5"
/replace="c"
/replace="t"
/db_xref="dbSNP:112637095"
variation 2374..2375
/gene="TIGD5"
/replace=""
/replace="t"
/db_xref="dbSNP:370705753"
variation 2378
/gene="TIGD5"
/replace="g"
/replace="t"
/db_xref="dbSNP:146194616"
ORIGIN
atgtaccccgcgggccccccggccggcccggtaccgcgccgcggccgccgtcccctgcccgggccccccgcgcccgccccagcccccgtccccgctgcacggccgccgccccccgcgcccgggccgcggccccgcgtggccgtgaagatggccttccgcaaggcctactccatcaaggacaagctgcaggccatcgagcgcgtcaagggcggcgagcggcaggccagtgtgtgccgcgacttcggcgtgccgggcgggacgctgcgcggctggctcaaggacgagcccaagctgcgctggttcctggagcagctgggcggtgaggtgggcactcagcgcaagaagatgcggctggccaacgaggaggagatcgaccgcgccgtgtacgcctggttcctggcgctgcgccagcacggggtgccgctgtctggcccgctcatccaggcgcaggccgaggccttcgcgcgccagatctacgggcccgagtgcaccttcaaggccagccacggctggttctggcgctggcagaagcgccacggcatctccagccagcgcttctacggcgaggccgggcccccagccccgagccccgcgcccggcccgcccgtcaaggaggagcccgcgctgccctccggcgccggccccctgcccgaccgcgccccggccccgccgcccccggccgagggcggctacggggacgagcagatttacagcgccagcgtcaccggcctctactggaagctgcttccggagcaggctgcgcccccgggcgcaggggaccccggggcggggggctgtggccggcgctggcggggcgaccgcgtaacggtgctgctggccgcaaacctgaccggcagccacaagctgaagccgctggtcatcgggcggctgccggacccgcccagcctgcgccaccacaaccaggacaagttcccggcctcctaccgctacagccccgacgcctggctcagccgcccgctgctgcggggctggttctttgaggaatttgtcccaggcgtcaaacgctacctgcgccgaagctgcctgcagcagaaggccgtgctgctggtggcccacccgccctgcccaagcccagctgccagtatgcccgccctggacagcgaggatgcccccgtgcggtgcaggccggagcccctcggtcccccggaggagctgcagacaccggatggcgctgtgcgggtgctgttcctgtccaaaggcagcagccgggcacatatccccgcaccgctggagcagggcgtggtggccgccttcaaacagctgtacaagcgcgagctgctgcgactggctgtgtcctgcgccagcggctccccgctggacttcatgcgcagcttcatgctcaaggacatgctctacctggctggcctctcctgggacctggtgcaggcgggcagcattgagcgctgctggctgctgggcctgcgggctgccttcgagccccggcccggcgaggacagtgctgggcagccggcccaggccgaggaagccgccgagcacagcagggtgctcagcgacctcacccacctggcggctctggcctacaagtgcctggctccggaggaggttgcggagtggctgcacctggacgatgatgggggtccgcccgagggctgcagggaggaggtgggcccagccctgccccctgcagcgcctccggccccagccagtctgccctctgccatggggggcggagaggacgaggaggaggccaccgactatggagggacctcagtgccgactgccggggaggccgtgcgggggctagaaacagctctgcggtggctggagaaccaggaccccagagaggtggggccactgaggctggtgcagttgcgctcactcatcagcatggcccggaggctggggggcatcgggcataccccagcaggcccctatgacggtgtgtgaccaggccagcccagtgacctttctcctgctgcacttggagggaggggacatacacacagtctcccatctctcctcccctccccctggggtggcccaccgcatgggtacagggggttccaggaatccaaatccagcatggcttggaggagctctgttggtgagaggtcgccctgcctcactggcaccctgggggcacagctggaagagaggcctggcccatgctcctctcagggcaggcacatgtacggggcatacaaggcacagcgcctgttggaacaggtggctgtgttcctgctctggcccccgtggggctgggcctccgcccctgcaccagtcacatgcactggacgagggccgaaactcctgtctgctatcgagccctggtgctatgtggccccggagccacagcacaatcatctcagtggcgaagcacaccacttgattctatttttttttaacacattaaatctgtttttaaagata
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:84948 -> Molecular function: GO:0003674 [molecular_function] evidence: ND
GeneID:84948 -> Molecular function: GO:0003677 [DNA binding] evidence: IEA
GeneID:84948 -> Biological process: GO:0008150 [biological_process] evidence: ND
GeneID:84948 -> Cellular component: GO:0005575 [cellular_component] evidence: ND
GeneID:84948 -> Cellular component: GO:0005634 [nucleus] evidence: IEA
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