2024-03-29 16:05:30, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_032181 1832 bp mRNA linear PRI 15-JUN-2013 DEFINITION Homo sapiens eva-1 homolog A (C. elegans) (EVA1A), transcript variant 2, mRNA. ACCESSION NM_032181 VERSION NM_032181.2 GI:205277350 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1832) AUTHORS Kamboh,M.I., Wang,X., Kao,A.H., Barmada,M.M., Clarke,A., Ramsey-Goldman,R., Manzi,S. and Demirci,F.Y. TITLE Genome-wide association study of antiphospholipid antibodies JOURNAL Autoimmune Dis 2013, 761046 (2013) PUBMED 23509613 REFERENCE 2 (bases 1 to 1832) AUTHORS Comuzzie,A.G., Cole,S.A., Laston,S.L., Voruganti,V.S., Haack,K., Gibbs,R.A. and Butte,N.F. TITLE Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population JOURNAL PLoS ONE 7 (12), E51954 (2012) PUBMED 23251661 REFERENCE 3 (bases 1 to 1832) AUTHORS Sun,W., Ma,X.M., Bai,J.P., Zhang,G.Q., Zhu,Y.J., Ma,H.M., Guo,H., Chen,Y.Y. and Ding,J.B. TITLE Transmembrane protein 166 expression in esophageal squamous cell carcinoma in Xinjiang, China JOURNAL Asian Pac. J. Cancer Prev. 13 (8), 3713-3716 (2012) PUBMED 23098460 REMARK GeneRIF: Low TMEM166 mRNA and protein expression is associated with esophageal squamous cell carcinoma. REFERENCE 4 (bases 1 to 1832) AUTHORS Wang,L., Yu,C., Lu,Y., He,P., Guo,J., Zhang,C., Song,Q., Ma,D., Shi,T. and Chen,Y. TITLE TMEM166, a novel transmembrane protein, regulates cell autophagy and apoptosis JOURNAL Apoptosis 12 (8), 1489-1502 (2007) PUBMED 17492404 REMARK GeneRIF: TMEM166 is a novel regulator involved in both autophagy and apoptosis. REFERENCE 5 (bases 1 to 1832) AUTHORS Wan,D., Gong,Y., Qin,W., Zhang,P., Li,J., Wei,L., Zhou,X., Li,H., Qiu,X., Zhong,F., He,L., Yu,J., Yao,G., Jiang,H., Qian,L., Yu,Y., Shu,H., Chen,X., Xu,H., Guo,M., Pan,Z., Chen,Y., Ge,C., Yang,S. and Gu,J. TITLE Large-scale cDNA transfection screening for genes related to cancer development and progression JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (44), 15724-15729 (2004) PUBMED 15498874 REMARK Erratum:[Proc Natl Acad Sci U S A. 2004 Dec 14:101(50):17565] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK023453.1 and AW016395.1. On Sep 19, 2008 this sequence version replaced gi:14149864. Transcript Variant: This variant (2) uses a different segment for its 5' UTR, compared to variant 1. Variants 1 and 2 both encode the same protein. ##Evidence-Data-START## Transcript exon combination :: AK023453.1, BI761625.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support ERS025084, ERS025085 [ECO:0000350] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1721 AK023453.1 1-1721 1722-1832 AW016395.1 1-111 c FEATURES Location/Qualifiers source 1..1832 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="2" /map="2p12" gene 1..1832 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /note="eva-1 homolog A (C. elegans)" /db_xref="GeneID:84141" /db_xref="HGNC:25816" /db_xref="HPRD:07827" exon 1..247 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /inference="alignment:Splign:1.39.8" misc_feature 214..216 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /note="upstream in-frame stop codon" exon 248..370 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /inference="alignment:Splign:1.39.8" variation 314 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /replace="c" /replace="g" /db_xref="dbSNP:11538748" exon 371..523 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /inference="alignment:Splign:1.39.8" CDS 439..897 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /note="transmembrane protein 166; protein FAM176A; family with sequence similarity 176, member A" /codon_start=1 /product="protein eva-1 homolog A" /protein_id="NP_115557.1" /db_xref="GI:14149865" /db_xref="CCDS:CCDS1959.1" /db_xref="GeneID:84141" /db_xref="HGNC:25816" /db_xref="HPRD:07827" /translation="
MRLPLSHSPEHVEMALLSNILAAYSFVSENPERAALYFVSGVCIGLVLTLAALVIRISCHTDCRRRPGKKFLQDRESSSDSSDSEDGSEDTVSDLSVRRHRRFERTLNKNVFTSAEELERAQRLEERERIIREIWMNGQPEVPGTRSLNRYY
" misc_feature 439..618 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9H8M9.1); Region: Necessary for the localization and biological activity" misc_feature 541..603 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q9H8M9.1); transmembrane region" exon 524..1815 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /inference="alignment:Splign:1.39.8" STS 1102..1299 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /standard_name="RH69495" /db_xref="UniSTS:80382" variation 1773 /gene="EVA1A" /gene_synonym="FAM176A; TMEM166" /replace="a" /replace="c" /db_xref="dbSNP:2215872" ORIGIN
agcataacctgtttgtgaaactgcaaaaaggttgacatggctgaagcagaagatgggttggtactgaatggttgggagagatatgtagcggctgaccctgaaggacgttgcagcccatgctatggagacctgattttattttgtaagaggtgggcaacccctgaagcattttagtgatgcgaacagatgtgtctgttaccaagcaaagccagttaaagaaggtcacagaggaggaatgatcacaaagagtctgagaagccaactggggccaaacaagttttagaacctctactggctgatgccaacatcatcagagatgaactgttcttaccagaaacttctctgctcctgacaccccacctctccccagaagagaagaaggagagtggccacgttgattcagccaagcacctccaggaggtcccctctggatgtcccatgaggctgcccctcagccacagcccagagcacgtggagatggctttgctcagcaacatcctagcggcctattcctttgtctcagaaaatcctgagcgagcagctctgtactttgtttctggcgtgtgcatcgggctggtgctgaccctggctgctctggtgataaggatctcttgccacacagactgcaggcggcgtcccgggaagaagttcctgcaggacagagagagcagcagcgacagcagcgacagcgaggatggcagtgaggacaccgtgtccgatctctccgtgcggagacaccgccgcttcgagaggactttgaacaagaatgtgttcacctctgcggaggagctggagcgcgcccagcggctggaggagcgcgagcgcatcatcagggagatctggatgaatggccagcctgaggtgcccgggaccaggagcctgaatcgctactattagggagcagcaggaccccggaaaccactggaggccgcctggaaaggagagcgtctgcagggacagtgggcacaaggaactgaacccagctctgctaatattgtgatttcagagaaaaagcaggacatgccccttttctagccaggaggattgctcctttttggccaaatgtatggagaagtagaaaaatcaaagcagttcatcaccctttccaggtctcggaatggtgctgaaaaatcctctccaacactgtggatggagatcggagaaacgcgactgtggtttctcttgatttctgaggatctcagaagtttcagcagacttccttgctctgtgttattcctttgcaaaaggaaagatcattatagcatgagggctgggaatagcagggtgaacttaacccaataaatgcaatttcctaaatgacttcatgctatggaggtgattctgattcaaatagcatgatccatgcttattatttaaggctgatttttaaaatcttgtgttgcaagggcaacctcgtccattttaactggcacctcagggattaaaatcctactttttagtgtagttcccacctcattcatgaaaatgaatagaactattgtattatgggagatgtgtcagtgaactagaaaatgtcaataacctcaaaggatgaagggtttttattttaaatagtttataaaatatatattgacatgcatatttgaaaatgctgcataaaaataaaagtggtgtgttttccccctctttggagacaagaaaattttattatgactctagataattgtgattttaaacactttgtttttttttttttttttaattggatttcaaagaaaagaatggaaatgagaggtaaggattaaagccaaagttaggatgggaattaaaaaaataaacattacataaaatcttaaaaaaaaaaaaaaaaa
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:84141 -> Biological process: GO:0006914 [autophagy] evidence: IEA GeneID:84141 -> Biological process: GO:0006915 [apoptotic process] evidence: IEA GeneID:84141 -> Cellular component: GO:0005765 [lysosomal membrane] evidence: IEA GeneID:84141 -> Cellular component: GO:0005789 [endoplasmic reticulum membrane] evidence: IEA GeneID:84141 -> Cellular component: GO:0005886 [plasma membrane] evidence: IDA GeneID:84141 -> Cellular component: GO:0016021 [integral to membrane] evidence: IEA GeneID:84141 -> Cellular component: GO:0043231 [intracellular membrane-bounded organelle] evidence: IDA
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