2024-04-27 10:21:16, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_022351 5140 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens N-terminal EF-hand calcium binding protein 1 (NECAB1), mRNA. ACCESSION NM_022351 VERSION NM_022351.4 GI:221219006 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5140) AUTHORS Wu,H., Li,D., Shan,Y., Wan,B., Hexige,S., Guo,J., Wu,C. and Yu,L. TITLE EFCBP1/NECAB1, a brain-specifically expressed gene with highest abundance in temporal lobe, encodes a protein containing EF-hand and antibiotic biosynthesis monooxygenase domains JOURNAL DNA Seq. 18 (1), 73-79 (2007) PUBMED 17364817 REFERENCE 2 (bases 1 to 5140) AUTHORS Sugita,S., Ho,A. and Sudhof,T.C. TITLE NECABs: a family of neuronal Ca(2+)-binding proteins with an unusual domain structure and a restricted expression pattern JOURNAL Neuroscience 112 (1), 51-63 (2002) PUBMED 12044471 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DB481874.1 and AF414126.2. On Jan 23, 2009 this sequence version replaced gi:142358119. ##Evidence-Data-START## Transcript exon combination :: BC068448.1, AK095533.1, BC068448.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025084, ERS025088 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-76 DB481874.1 1-76 77-5140 AF414126.2 166-5229 FEATURES Location/Qualifiers source 1..5140 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="8" /map="8q21.3" gene 1..5140 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /note="N-terminal EF-hand calcium binding protein 1" /db_xref="GeneID:64168" /db_xref="HGNC:20983" /db_xref="HPRD:16851" exon 1..293 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" CDS 195..1250 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /note="EF hand calcium binding protein 1; EF-hand calcium binding protein 1; synaptotagmin interacting protein 1; neuronal calcium binding protein; EF-hand calcium-binding protein 1; neuronal calcium-binding protein 1" /codon_start=1 /product="N-terminal EF-hand calcium-binding protein 1" /protein_id="NP_071746.1" /db_xref="GI:24308279" /db_xref="CCDS:CCDS47889.1" /db_xref="GeneID:64168" /db_xref="HGNC:20983" /db_xref="HPRD:16851" /translation="
MEDSQETSPSSNNSSEELSSALHLSKGMSIFLDILRRADKNDDGKLSFEEFKAYFADGVLSGEELHELFHTIDTHNTNNLDTEELCEYFSQHLGEYENVLAALEDLNLSILKAMGKTKKDYQEASNLEQFVTRFLLKETLNQLQSLQNSLECAMETTEEQTRQERQGPAKPEVLSIQWPGKRSSRRVQRHNSFSPNSPQFNVSGPGLLEEDNQWMTQINRLQKLIDRLEKKDLKLEPPEEEIIEGNTKSHIMLVQRQMSVIEEDLEEFQLALKHYVESASSQSGCLRISIQKLSNESRYMIYEFWENSSVWNSHLQTNYSKTFQRSNVDFLETPELTSTMLVPASWWILNN
" misc_feature 285..464 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /note="EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to...; Region: EFh; cd00051" /db_xref="CDD:28933" misc_feature 300..461 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /note="EF-hand domain pair; Region: EF_hand_5; pfam13499" /db_xref="CDD:205677" misc_feature order(309..311,315..317,321..323,342..344,411..413, 417..419,423..425,444..446) /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /note="Ca2+ binding site [ion binding]; other site" /db_xref="CDD:28933" misc_feature 954..1169 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /note="Antibiotic biosynthesis monooxygenase; Region: ABM; pfam03992" /db_xref="CDD:202845" exon 294..318 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" exon 319..427 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" exon 428..453 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" exon 454..551 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" exon 552..688 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" exon 689..810 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" exon 811..887 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" exon 888..941 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" exon 942..1054 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" exon 1055..1132 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" exon 1133..1224 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" exon 1225..5140 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /inference="alignment:Splign:1.39.8" STS 3026..3174 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /standard_name="RH102239" /db_xref="UniSTS:96573" STS 4442..4569 /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /standard_name="RH93833" /db_xref="UniSTS:91492" variation complement(4582..4583) /gene="NECAB1" /gene_synonym="EFCBP1; STIP-1" /replace="" /replace="ttct" /db_xref="dbSNP:3830308" ORIGIN
agaggccggaggagggagggggggacaccgagcgcggagagcgcggagagcgcggagggaggcgcgcgcgggagcgaacaccctcccggatccagagcccggcggcggcgaagcagcagctgcggccgcgcccttgccagagccggtgcgtccgcctagccccgctccgcctgaggccgtcagggctcccgaggatggaagattcccaggagacatcgccgtcctccaacaactcctcggaggagctcagctctgctctgcacctgtccaagggcatgtcgatcttcctcgacatactgaggagagcagacaaaaatgatgatggaaaattatcctttgaagaattcaaagcatattttgcagatggtgttctcagtggagaagaattacacgagcttttccataccattgatacacataatactaataatcttgacacagaagagctatgtgaatatttttctcagcacttgggcgagtatgagaatgtactagcagcacttgaagacctgaatctttccatcctgaaggcaatgggcaaaacaaagaaagactaccaagaagcctccaatttggaacaattcgtaactagatttttattgaaggaaaccctgaatcagctgcagtctctccagaattccctggaatgtgccatggaaactactgaggagcaaacccgtcaagaaaggcaagggccagccaagccagaagtcctgtcgattcaatggcctggaaaacgatcaagccgccgagtccagagacacaacagcttctccccaaacagccctcagtttaatgtcagcggtccaggcttattagaagaagacaaccagtggatgacccagataaatagactccagaaattaattgatagactggaaaagaaggatctcaaactcgaaccaccagaagaagaaattattgaagggaatactaaatctcacatcatgcttgtgcagcggcagatgtctgtgatagaagaggacctggaagaattccagctcgctctgaaacactacgtggagagtgcttcctcccaaagtggatgcttgcgtatttctatacagaagctttcaaatgaatctcgctacatgatctatgagttctgggagaatagtagtgtatggaatagccaccttcagacaaattatagcaagacattccaaagaagtaatgtggatttcttggaaactccagaactcacatctacaatgctagttcctgcttcgtggtggatcctgaacaactagatgttcctagacattttctttatggttccaagtgcaaaacaggtgttcttatctaaaacgtcaattagaaaattatctgcggttgttaatctactgtatatttttgtttggtatatttactaagtgcactctttcaaaacttattctataactttatcaattcatgtgaattttagctcaattttcaaagttcactaatattctcaatatttaatgctaaatgctttgctacattgtaactcacctaaaaccttttagtgacaaaatcctaatatgtggaaaaaagcatatgcataaaggaataatattgtgaaaatgaatctgttatgataaagaaaaaataaagtggaaacttttagagtattacttcatagggcagattttgtaaactgtcgtatactgtaaagggttaaatcagcgttttgtgatttttaagtaactgtgagtgaagtttattcttcaacaatgtctactccatccccaacccaactcacagccctatgactactatctttgcattagttaaaaagttagtatataggcatcaaacaaccttggctgtaacctatagaatctctatccacgtatcaggttatagactggtttttcaaaagtgaacaatcctgtgataagttggagtaccatttagtaatacagcaacattgtgtcatttattagcatcataattctttgttatgtaagttaaatatatcaagaaagaagagactgtttggaaaaatgtggttcaagttttatgctatatagttttggtatgcgatacagacagctaacttttcttatgaaaaatacatatttgcatgtaaacaatgatttcaaaatacttgaaaaataaaattttaacccaaatgaataactaagaaatataaaacaagcacaaaatcttagggaagtcataaaatagtagtgaaagtattagacagaagacatctgttttcgaatttcaacactagaatgactaaaactatctacctatagaactatctgtagatagtatactatctacactctgctcaacaagctcagaaattaaatatttttaataataaaaatctgttctggttataaaccttgctaatgaaaatacaatacatataaaaatgtatagccatgttattttctagtataaattcctttgaaactataagtctttgaggaaaattataaggtaaaattttcctgtttttccccctttgaaaaactcaggaaaaaaggaagattgaactaataaaattttatttcttaaatataaatttgacctaaaatattttctcaaactaattcatgaaacagcaacttttaccaatacctttgtatactctcagttctcattcagtataaataaaattttaaaatcctttcatagttctattagaaataagtagtaaattttgatatattgtacatacacacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatttgtgtgcctctggtcaactctaaggatgacagacactgtgtaacaacacctgggtcaactcttttaatttatatacaaagcaaagaacaacattaatggagatgcacaatgattattcaaacaagctatatatatgtacaaaggcaaacagacacataacagtctctgcagactgattgtatatagtaagaaaagatcaaaagactttaaaacctaaatgacttttgacatacaaactcttcttgagaatgtttgttgtaaatggtttcaaaaatacaaattatagccaatcaaaacattgctttggttggtgcatttaagtatccaactcaaaaagcatatcaaatattttgggtactaggcagtttccaaagtagcatggtagtattacttgttaaaagggttctgttttcattaacagtactaagtggaagggatctgcagattccaaactggaataagctctatcatattctgaaacaagaattagaatgacttgagaacgggcaaataacaaagcaaaccaatataattatatggtcattctgaccccagctcttatacaaattatacatgtatttttgtgtatgtttgtgagagttgtatgtatgtgaatgtgtgtgagtgtgtattcacatacacatatatactggaacctatagtagaaaaggaaactagtagggccaaaaaaaaaaagaaaaagaaaaagaaaaaagaaaaaaaaagaaaaaactgggacctaagtataaatatctcatcctaaagtaaacaataagtttatagttaacgaagatttttttctatttaaaaccccattttcctaaagaacaaagtagtaaaataaaaaaaaatttaaaaaattaaaaaataaaaaaaagaggtcactaaaagaccaagatgggaaacgtaacatggaatacaagcttgaatctgggaaacaagctcaaaaaacagtgaaaaaaaaagtactggtttaggagttcaaaattcagtgaaacaaactttttgccaatagacctagggatctaagaaatagaattagggagagtttacacttacttacctatatatcagcagatttttctggaagaaaccctttttttttttttttttaaacagtaacatccagagtgacaaattgcaggagatttaatgtataaaatttctaggaattaaaagcttaaacccaaaaattgttcatccatatataagaaattatcgaattaaaacttaatgtatgtcaattattttcaaatgtctaaattcctttggaaataaaaatatcagttttactttgaaattgctcaacttctgctattcatatggtctgattagtgacataagtagcagccgtttttcaacttcagtttcattcactaccattgtttccaaattatcaatctctgctagtaattatgaatttaagaccatattattatcaaaaacctagagaccaatcatatatctgaaaagaaatacccattaaaaattctgcctcctgtttattgagaactatgcattgaacattctgaatcattctaagcctctggagagactgtaatgatccattcatgagctggtatgaaatcagtgggaagcagaacaacagaaggaactttaaaagcaacaagcaattatgtaccatatatacactgtagcaaatattttatatttgagagtctttacagcttacatttccattccattattacaagtgatgaaaaacaaaaaattgcaagtagtatgcaaattataaatatacagtcttcccacttcactaaccaaattcctactttccagtgttacttcccaatttatgcaggaaacctcctgcaaagctgaaactgattagaaaattctttatattttaaaatagctctttctcatttttagagaagtcaaatagccaaccatcaaaattaagaataaattgaattgtcacagtccattacagttattgttgctagatccacctcatttgcagatgtccaaacttaaattcatctgttcttaaaatgctacttaaaactttggttgttttcctgtaatataaaagaaaaagttaatttatcaattgattgaatacagtttttactaattagtttatcaaaccaaatactgtgaacgtaccaggtgtttacagatttaaatgcatgttaccatagaaactattaaagtaactagaactgtcaaataacaaaacggctcatgtttttaaaatatatgtaactcattttaaaatatattaaattgtattccaaacctgttcttctgtttctgtggcacctaggtttaaaatatgtattaatgtgtaaatcacaagtaaaatgaattctaatgtacaagtttgttttaaaaagtgtatgtcaagcttttatttacacaataaaatgttattaaagatggaaagtcta
//
ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:64168 -> Molecular function: GO:0005509 [calcium ion binding] evidence: IEA GeneID:64168 -> Cellular component: GO:0005634 [nucleus] evidence: IDA GeneID:64168 -> Cellular component: GO:0005730 [nucleolus] evidence: IDA GeneID:64168 -> Cellular component: GO:0005737 [cytoplasm] evidence: IDA GeneID:64168 -> Cellular component: GO:0043231 [intracellular membrane-bounded organelle] evidence: IDA
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