GGRNA Home | Help | Advanced search

2024-03-29 14:31:51, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_022135               1667 bp    mRNA    linear   PRI 17-APR-2013
DEFINITION  Homo sapiens popeye domain containing 2 (POPDC2), mRNA.
ACCESSION   NM_022135
VERSION     NM_022135.2  GI:22209003
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1667)
  AUTHORS   Lamesch,P., Li,N., Milstein,S., Fan,C., Hao,T., Szabo,G., Hu,Z.,
            Venkatesan,K., Bethel,G., Martin,P., Rogers,J., Lawlor,S.,
            McLaren,S., Dricot,A., Borick,H., Cusick,M.E., Vandenhaute,J.,
            Dunham,I., Hill,D.E. and Vidal,M.
  TITLE     hORFeome v3.1: a resource of human open reading frames representing
            over 10,000 human genes
  JOURNAL   Genomics 89 (3), 307-315 (2007)
   PUBMED   17207965
REFERENCE   2  (bases 1 to 1667)
  AUTHORS   Andree,B., Hillemann,T., Kessler-Icekson,G., Schmitt-John,T.,
            Jockusch,H., Arnold,H.H. and Brand,T.
  TITLE     Isolation and characterization of the novel popeye gene family
            expressed in skeletal muscle and heart
  JOURNAL   Dev. Biol. 223 (2), 371-382 (2000)
   PUBMED   10882522
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from AF204173.1.
            On Aug 12, 2002 this sequence version replaced gi:11545868.
            
            Summary: This gene encodes a member of the POP family of proteins
            which contain three putative transmembrane domains. This membrane
            associated protein is predominantly expressed in skeletal and
            cardiac muscle, and may have an important function in these
            tissues. [provided by RefSeq, Jul 2008].
            
            ##Evidence-Data-START##
            Transcript exon combination :: AF204173.1, BC044929.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           ERS025081, ERS025083 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..1667
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="3"
                     /map="3q13.33"
     gene            1..1667
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /note="popeye domain containing 2"
                     /db_xref="GeneID:64091"
                     /db_xref="HGNC:17648"
                     /db_xref="HPRD:16160"
                     /db_xref="MIM:605823"
     exon            1..625
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    120..122
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /note="upstream in-frame stop codon"
     CDS             135..1229
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /note="popeye protein 2"
                     /codon_start=1
                     /product="popeye domain-containing protein 2"
                     /protein_id="NP_071418.2"
                     /db_xref="GI:22209004"
                     /db_xref="CCDS:CCDS2992.1"
                     /db_xref="GeneID:64091"
                     /db_xref="HGNC:17648"
                     /db_xref="HPRD:16160"
                     /db_xref="MIM:605823"
                     /translation="
MSANSSRVGQLLLQGSACIRWKQDVEGAVYHLANCLLLLGFMGGSGVYGCFYLFGFLSAGYLCCVLWGWFSACGLDIVLWSFLLAVVCLLQLAHLVYRLREDTLPEEFDLLYKTLCLPLQVPLQTYKEIVHCCEEQVLTLATEQTYAVEGETPINRLSLLLSGRVRVSQDGQFLHYIFPYQFMDSPEWESLQPSEEGVFQVTLTAETSCSYISWPRKSLHLLLTKERYISCLFSALLGYDISEKLYTLNDKLFAKFGLRFDIRLPSLYHVLGPTAADAGPESEKGDEEVCEPAVSPPQATPTSLQQTPPCSTPPATTNFPAPPTRARLSRPDSGILASRIPLQSYSQVISRGQAPLAPTHTPEL
"
     misc_feature    243..305
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9HBU9.2);
                     transmembrane region"
     misc_feature    363..425
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9HBU9.2);
                     transmembrane region"
     misc_feature    453..914
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /note="Popeye protein conserved region; Region: Popeye;
                     pfam04831"
                     /db_xref="CDD:203101"
     variation       598
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:199588679"
     exon            626..734
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /inference="alignment:Splign:1.39.8"
     exon            735..1143
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /inference="alignment:Splign:1.39.8"
     variation       1122
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:34156828"
     exon            1144..1644
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /inference="alignment:Splign:1.39.8"
     STS             1440..1563
                     /gene="POPDC2"
                     /gene_synonym="POP2"
                     /standard_name="SHGC-77235"
                     /db_xref="UniSTS:22566"
     polyA_signal    1628..1633
                     /gene="POPDC2"
                     /gene_synonym="POP2"
ORIGIN      
cttctaggaaaggtggagtcggtagtgagaagccggaggtgagaagacccctgagcggatggattcattcattttctgaatttcctatgtgaggacagtattagagcccagtgaggctttgagaggccccaaagatgagcgccaacagcagcagagtgggccagcttctcttgcagggttcagcgtgcattaggtggaagcaggatgtggaaggggctgtctaccacctagccaactgcctcttactcctgggcttcatggggggcagtggggtgtatggatgcttctatctttttggcttcctgagtgcaggttacctgtgctgcgtgctgtggggctggttcagtgcctgtggcctggacattgttctttggagcttcctgctggctgtggtctgcctgctccagctggcacacctggtataccgcctgcgtgaggacaccctccctgaggagtttgacctcctctacaagacgctgtgcctgcccttgcaggtgcccctacagacatacaaggagattgttcactgctgcgaggagcaggtcttaactctggccactgaacagacctatgctgtggagggtgagacacccatcaaccgcctgtccctgctgctctctggccgggttcgtgtgagccaggatgggcagtttctgcactacatctttccataccagttcatggactctcctgagtgggaatcactacagccttctgaggagggggtgttccaggtcactctgactgctgagacctcatgtagctacatttcctggccccggaaaagtctccatcttcttctgaccaaagagcgatacatctcctgcctcttctcggctctgctgggatatgacatctcagagaagctctacactctcaatgacaagctctttgctaagtttgggctgcgctttgacatccgccttcccagcctctaccatgtcctgggtcccactgctgcagatgctggaccagagtccgagaagggtgatgaggaagtctgtgagccagctgtgtcccctcctcaggccacacccacctctctccagcaaacacccccttgttctacccctccagctaccaccaactttcctgcacctcctacccgggccaggttgtccaggccagacagtggcatactggcttctagaattcctctccagagctactctcaagttatatccaggggacaggcccctttggctccaacccacacgcctgaactttaaggatcattggactatcttctctgtggccagcgcagctctcttctgtgttcacagaatggccactgataggcatgcctcttttcccacccactggaaggctcacaggcaaggtgagagaggacacagaaggtgccaacactgtcgctacagtaaggacctgaagtgactttgagaaattcaccctcacaaaccttccttcaggagcaggcattggtagtgcagaggcacagattccgtcctttaccagctgcagaatcttgggcaagttacatagcctctgtgagcctcatcggtaaacagtgggggttatgaaacccacctcacagggttgttgtgaggatccaatgagttgatttaggtaagcacctagcacatgccgtggcaccaagtaagcactcaataaatcactcaactcttaaaaaaaaaaaaaaaaaaaaa
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:64091 -> Molecular function: GO:0003674 [molecular_function] evidence: ND
            GeneID:64091 -> Biological process: GO:0008150 [biological_process] evidence: ND
            GeneID:64091 -> Cellular component: GO:0016021 [integral to membrane] evidence: NAS

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 2.1 Japan License.