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2024-03-29 20:08:55, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_022063               2766 bp    mRNA    linear   PRI 17-APR-2013
DEFINITION  Homo sapiens family with sequence similarity 204, member A
            (FAM204A), transcript variant 1, mRNA.
ACCESSION   NM_022063
VERSION     NM_022063.2  GI:197927280
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2766)
  AUTHORS   Lamesch,P., Li,N., Milstein,S., Fan,C., Hao,T., Szabo,G., Hu,Z.,
            Venkatesan,K., Bethel,G., Martin,P., Rogers,J., Lawlor,S.,
            McLaren,S., Dricot,A., Borick,H., Cusick,M.E., Vandenhaute,J.,
            Dunham,I., Hill,D.E. and Vidal,M.
  TITLE     hORFeome v3.1: a resource of human open reading frames representing
            over 10,000 human genes
  JOURNAL   Genomics 89 (3), 307-315 (2007)
   PUBMED   17207965
REFERENCE   2  (bases 1 to 2766)
  AUTHORS   Grupe,A., Li,Y., Rowland,C., Nowotny,P., Hinrichs,A.L., Smemo,S.,
            Kauwe,J.S., Maxwell,T.J., Cherny,S., Doil,L., Tacey,K., van
            Luchene,R., Myers,A., Wavrant-De Vrieze,F., Kaleem,M.,
            Hollingworth,P., Jehu,L., Foy,C., Archer,N., Hamilton,G.,
            Holmans,P., Morris,C.M., Catanese,J., Sninsky,J., White,T.J.,
            Powell,J., Hardy,J., O'Donovan,M., Lovestone,S., Jones,L.,
            Morris,J.C., Thal,L., Owen,M., Williams,J. and Goate,A.
  TITLE     A scan of chromosome 10 identifies a novel locus showing strong
            association with late-onset Alzheimer disease
  JOURNAL   Am. J. Hum. Genet. 78 (1), 78-88 (2006)
   PUBMED   16385451
  REMARK    GeneRIF: Observational study of gene-disease association. (HuGE
            Navigator)
REFERENCE   3  (bases 1 to 2766)
  AUTHORS   Oh,J.H., Yang,J.O., Hahn,Y., Kim,M.R., Byun,S.S., Jeon,Y.J.,
            Kim,J.M., Song,K.S., Noh,S.M., Kim,S., Yoo,H.S., Kim,Y.S. and
            Kim,N.S.
  TITLE     Transcriptome analysis of human gastric cancer
  JOURNAL   Mamm. Genome 16 (12), 942-954 (2005)
   PUBMED   16341674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DA168924.1, BC023577.2 and AL365498.21.
            On Sep 4, 2008 this sequence version replaced gi:11545770.
            
            Transcript Variant: This variant (1) represents the longer
            transcript.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            transcript and genomic sequence to make the sequence consistent
            with the reference genome assembly. The extent of this transcript
            is supported by transript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK023250.1, AK026630.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           ERS025081, ERS025082 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-17                DA168924.1         5-21
            18-1106             BC023577.2         1-1089
            1107-2766           AL365498.21        35892-37551         c
FEATURES             Location/Qualifiers
     source          1..2766
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="10"
                     /map="10q26.11"
     gene            1..2766
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /note="family with sequence similarity 204, member A"
                     /db_xref="GeneID:63877"
                     /db_xref="HGNC:25794"
                     /db_xref="HPRD:12593"
     misc_feature    <1..>1660
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /note="annotated region of clone"
     exon            1..58
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /inference="alignment:Splign:1.39.8"
     exon            59..259
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    259..261
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /note="upstream in-frame stop codon"
     exon            260..501
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /inference="alignment:Splign:1.39.8"
     CDS             268..969
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /codon_start=1
                     /product="protein FAM204A"
                     /protein_id="NP_071346.1"
                     /db_xref="GI:11545771"
                     /db_xref="CCDS:CCDS7605.1"
                     /db_xref="GeneID:63877"
                     /db_xref="HGNC:25794"
                     /db_xref="HPRD:12593"
                     /translation="
MWSGLLPPGLNESDAESNSEDEATLENSGLNLQEDKEDESIRKTEIIDFSTDEPKTETESNVNAYEECPSGIPIDMWNKFQELHKKHSEQKSTTSRFRGKRRKRSRKDKLKNEKELHSEPSSNETQWKELTQYFGVNDRFDPPVKRKKVEKSGLEKRIDQAVEEWNIEKAEELSNQLATRELGVKIAKAVACHNFVKAKKEVENSQAARKKKKLAWGFEAKKRWETKSNMGYM
"
     exon            502..589
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /inference="alignment:Splign:1.39.8"
     exon            590..620
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /inference="alignment:Splign:1.39.8"
     exon            621..720
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /inference="alignment:Splign:1.39.8"
     exon            721..810
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /inference="alignment:Splign:1.39.8"
     exon            811..917
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /inference="alignment:Splign:1.39.8"
     STS             855..955
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /standard_name="RH143414"
                     /db_xref="UniSTS:232661"
     STS             868..991
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /standard_name="SHGC-76092"
                     /db_xref="UniSTS:75119"
     exon            918..2766
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /inference="alignment:Splign:1.39.8"
     STS             925..1031
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /standard_name="G22405"
                     /db_xref="UniSTS:51049"
     STS             1018..1110
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /standard_name="RH93408"
                     /db_xref="UniSTS:88554"
     variation       1320
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201808962"
     polyA_signal    2028..2033
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
     polyA_site      2061
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
     STS             2080..2261
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /standard_name="SHGC-52428"
                     /db_xref="UniSTS:7398"
     STS             2083..2358
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
                     /standard_name="SHGC-132812"
                     /db_xref="UniSTS:170902"
     polyA_site      2475
                     /gene="FAM204A"
                     /gene_synonym="bA319I23.1; C10orf84; RP11-319I23.1"
ORIGIN      
agaaggcgcgatgttgacggggtcctaagatggctgctgggcgaccacttcctgacagctccagttaatgggactgccagcaggctagacatccttcgccggaatgtgcagcgcttagttctgtgcccgggaggggcttctctctcttttgggattggagtgtggcattgccgccagaaagcctgcagaattccgggttgtgcagccaagcaggaacggtgtacctttctagacccatcctcttgcaatcttggaccctaagaaaagatgtggagtgggctgctacctcctggcctaaatgaaagtgacgctgagtcaaactcggaagatgaagctacgttggagaactctggacttaacttacaggaagataaagaggatgagagcatcagaaaaacagaaatcatagatttctcaacagatgaaccaaaaactgaaacagagtcaaatgtaaatgcctatgaagagtgtccttctggaattcccatagatatgtggaataaatttcaagaattgcataaaaaacattctgaacagaaaagcacaacctcaagattcagagggaaaagaagaaaacgctccagaaaagataaattgaagaatgaaaaagaattacatagtgaaccgtcctcaaatgaaacccagtggaaagagcttactcagtattttggagtcaatgatagatttgacccgcctgttaaaaggaaaaaagttgagaagtcaggccttgaaaagaggatagaccaggctgtggaggagtggaatattgagaaggctgaggaactcagcaaccagctagctactcgagagcttggtgtaaaaattgccaaagcagttgcctgccacaactttgtaaaagccaaaaaggaggttgaaaattcacaggctgcccgaaaaaagaagaaacttgcatgggggtttgaagcaaagaagagatgggaaaccaaaagcaacatgggatacatgtaacttgccagagtgcttcaagacatttgtagactcaaatgctcaatttactgagaatgttttcctgcctatgttaatatgtcagaaaattgatagcactaaaacaaaaataagcataaaatttgggattttgattatcagctcttttcagtctttctttaaggactttgtcctattgaagtgaataaaatgaagcattctgttatttgtataagaaatgtaagaaaaaaaatatagaaagaagaggataggattttgtttatttgtatggatggacccttggtataaaatcacttttggcgctttccattcatttggtttagcacagccagtgagcttctcgtactttctttctttttttttttttttttgagacagagcctcgcttgctctgtcacccaggctagagtgcagtagcacgatcttggctcactgcaaccactgcttcctgggttcaagtgattctcatgcctcagcctcctgagtagctgggattatggacaaatgccaccacacccggctaattttttttttttttttgtatttttagtagagacagagttttgctgtgttggtcaggctggtcttgaactcctggcctcatatgattcacctgcctctgcctcccaaagttctgggagtacagacatgagctaccatgctgcccttgtattttcttatctgtacccagtgtaactacacgtttactggaactgtgtttttaagactgacagttgtttataatggattagtcgtaagtaccaaaaagtctcagttgatattatctttacaaatgacttgaccttaatgttataaaagtagttactgtttttttttaattggaggcagacttgatatttcagagttgcatagtaaaagcaatttgttaatttttgtgtactttcagataaactattacaataaagaaaggagcagaatgtagtatttggaagatgatttaaattcagcaacgcctaaaaatgtcttcctaagtatttttctcagccatgtcattctttaaattatgagatggttcttagaagagaaaatggtgtaattgtattaaacagacaattataactcaagataatataactttgaaccttctaagaactgatttgtttggttttcctcccattccccattcctccttaaaagattgaatgaattaatgagcagaaagagaggattggtaacatgggaaatcgttttcattagatgtacatttcctggttctgacaggaaaggggctccagaaaatcataaaacaagcaggtgaacaagaccaggtgtgtcggcacctccctgctcagtgcccagcggaggtaaagaaccactcagcatggtttttgtcagttcacctcttctgtcgttgtcagaggtttcctacctgtctgatataaactttctctgggttgataatataaattcagaaacatgtaaaatgaatcatgattatattactgttatttttagacttaaaatagtaacaaaattttatttatggtggcacatttaatggctttttttttctgtgttctggaataagagaatacctagctactatttaagcatccaaaaatcatatcttgctttcatttagttgagaaaagccagcatagagaaagcaaagttttagaatattatgtgtcatactaattcagtatccagaccaaatgttggaaagtcttattttatgatttaatatcccttgttccattttacagatatgatcatgtaaaacttacctacaatattcatttcaaactgctaaattaggtaaatacagacttttagtat
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