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2024-03-29 11:39:14, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_021253               3354 bp    mRNA    linear   PRI 07-JUL-2013
DEFINITION  Homo sapiens tripartite motif containing 39 (TRIM39), transcript
            variant 1, mRNA.
ACCESSION   NM_021253
VERSION     NM_021253.3  GI:215272322
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3354)
  AUTHORS   Zhang,L., Huang,N.J., Chen,C., Tang,W. and Kornbluth,S.
  TITLE     Ubiquitylation of p53 by the APC/C inhibitor Trim39
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 109 (51), 20931-20936 (2012)
   PUBMED   23213260
  REMARK    GeneRIF: analysis of ubiquitylation of p53 by the APC/C inhibitor
            Trim39
REFERENCE   2  (bases 1 to 3354)
  AUTHORS   Zhang,L., Mei,Y., Fu,N.Y., Guan,L., Xie,W., Liu,H.H., Yu,C.D.,
            Yin,Z., Yu,V.C. and You,H.
  TITLE     TRIM39 regulates cell cycle progression and DNA damage responses
            via stabilizing p21
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 109 (51), 20937-20942 (2012)
   PUBMED   23213251
  REMARK    GeneRIF: TRIM39 has a role in regulating cell cycle progression and
            the balance between cytostasis and apoptosis after DNA damage via
            stabilizing p21
            Erratum:[Proc Natl Acad Sci U S A. 2013 Mar 5;110(10):4148]
REFERENCE   3  (bases 1 to 3354)
  AUTHORS   Kurata,R., Nakaoka,H., Tajima,A., Hosomichi,K., Shiina,T.,
            Meguro,A., Mizuki,N., Ohono,S., Inoue,I. and Inoko,H.
  TITLE     TRIM39 and RNF39 are associated with Behcet's disease independently
            of HLA-B *51 and -A *26
  JOURNAL   Biochem. Biophys. Res. Commun. 401 (4), 533-537 (2010)
   PUBMED   20875797
  REMARK    GeneRIF: these findings suggest that RNF39 and TRIM39 are involved
            in the etiology of Behcet's disease.
REFERENCE   4  (bases 1 to 3354)
  AUTHORS   Barcellos,L.F., May,S.L., Ramsay,P.P., Quach,H.L., Lane,J.A.,
            Nititham,J., Noble,J.A., Taylor,K.E., Quach,D.L., Chung,S.A.,
            Kelly,J.A., Moser,K.L., Behrens,T.W., Seldin,M.F., Thomson,G.,
            Harley,J.B., Gaffney,P.M. and Criswell,L.A.
  TITLE     High-density SNP screening of the major histocompatibility complex
            in systemic lupus erythematosus demonstrates strong evidence for
            independent susceptibility regions
  JOURNAL   PLoS Genet. 5 (10), E1000696 (2009)
   PUBMED   19851445
  REMARK    GeneRIF: Observational study of gene-disease association. (HuGE
            Navigator)
REFERENCE   5  (bases 1 to 3354)
  AUTHORS   Lee,S.S., Fu,N.Y., Sukumaran,S.K., Wan,K.F., Wan,Q. and Yu,V.C.
  TITLE     TRIM39 is a MOAP-1-binding protein that stabilizes MOAP-1 through
            inhibition of its poly-ubiquitination process
  JOURNAL   Exp. Cell Res. 315 (7), 1313-1325 (2009)
   PUBMED   19100260
  REMARK    GeneRIF: Data suggest that TRIM39 can promote apoptosis signalling
            through stabilization of MOAP-1.
REFERENCE   6  (bases 1 to 3354)
  AUTHORS   Roberts,J.D. Jr., Chiche,J.D., Kolpa,E.M., Bloch,D.B. and
            Bloch,K.D.
  TITLE     cGMP-dependent protein kinase I interacts with TRIM39R, a novel
            Rpp21 domain-containing TRIM protein
  JOURNAL   Am. J. Physiol. Lung Cell Mol. Physiol. 293 (4), L903-L912 (2007)
   PUBMED   17601797
REFERENCE   7  (bases 1 to 3354)
  AUTHORS   Wu,C., Ma,M.H., Brown,K.R., Geisler,M., Li,L., Tzeng,E., Jia,C.Y.,
            Jurisica,I. and Li,S.S.
  TITLE     Systematic identification of SH3 domain-mediated human
            protein-protein interactions by peptide array target screening
  JOURNAL   Proteomics 7 (11), 1775-1785 (2007)
   PUBMED   17474147
REFERENCE   8  (bases 1 to 3354)
  AUTHORS   Tao,W.A., Wollscheid,B., O'Brien,R., Eng,J.K., Li,X.J.,
            Bodenmiller,B., Watts,J.D., Hood,L. and Aebersold,R.
  TITLE     Quantitative phosphoproteome analysis using a dendrimer conjugation
            chemistry and tandem mass spectrometry
  JOURNAL   Nat. Methods 2 (8), 591-598 (2005)
   PUBMED   16094384
REFERENCE   9  (bases 1 to 3354)
  AUTHORS   Reymond,A., Meroni,G., Fantozzi,A., Merla,G., Cairo,S., Luzi,L.,
            Riganelli,D., Zanaria,E., Messali,S., Cainarca,S., Guffanti,A.,
            Minucci,S., Pelicci,P.G. and Ballabio,A.
  TITLE     The tripartite motif family identifies cell compartments
  JOURNAL   EMBO J. 20 (9), 2140-2151 (2001)
   PUBMED   11331580
REFERENCE   10 (bases 1 to 3354)
  AUTHORS   Orimo,A., Yamagishi,T., Tominaga,N., Yamauchi,Y., Hishinuma,T.,
            Okada,K., Suzuki,M., Sato,M., Nogi,Y., Suzuki,H., Inoue,S.,
            Yoshimura,K., Shimizu,Y. and Muramatsu,M.
  TITLE     Molecular cloning of testis-abundant finger Protein/Ring finger
            protein 23 (RNF23), a novel RING-B box-coiled coil-B30.2 protein on
            the class I region of the human MHC
  JOURNAL   Biochem. Biophys. Res. Commun. 276 (1), 45-51 (2000)
   PUBMED   11006080
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from AI159923.1, AK292512.1,
            AL662795.5 and BC034985.1.
            On Nov 27, 2008 this sequence version replaced gi:25777695.
            
            Summary: The protein encoded by this gene is a member of the
            tripartite motif (TRIM) family. The TRIM motif includes three
            zinc-binding domains, a RING, a B-box type 1 and a B-box type 2,
            and a coiled-coil region. The function of this protein has not been
            identified. This gene lies within the major histocompatibility
            complex class I region on chromosome 6. Alternate splicing results
            in two transcript variants encoding different isoforms. [provided
            by RefSeq, Jul 2008].
            
            Transcript Variant: This variant (1) encodes the longer isoform (1)
            of this protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK292512.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           ERS025084, ERS025088 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-83                AI159923.1         1-83
            84-2080             AK292512.1         1-1997
            2081-2772           AL662795.5         75824-76515
            2773-3354           BC034985.1         2970-3551
FEATURES             Location/Qualifiers
     source          1..3354
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="6"
                     /map="6p21.3"
     gene            1..3354
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /note="tripartite motif containing 39"
                     /db_xref="GeneID:56658"
                     /db_xref="HGNC:10065"
                     /db_xref="HPRD:09298"
                     /db_xref="MIM:605700"
     exon            1..152
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /inference="alignment:Splign:1.39.8"
     exon            153..305
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /inference="alignment:Splign:1.39.8"
     variation       168
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:5030609"
     variation       176
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:191524798"
     variation       190..192
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace=""
                     /replace="gga"
                     /db_xref="dbSNP:5030610"
     variation       224
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:376835401"
     variation       291
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:181517611"
     exon            306..765
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    307..309
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /note="upstream in-frame stop codon"
     CDS             313..1869
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /note="isoform 1 is encoded by transcript variant 1; ring
                     finger protein 23; tripartite motif-containing 39;
                     testis-abundant finger protein; tripartite
                     motif-containing protein 39; E3 ubiquitin-protein ligase
                     TRIM39"
                     /codon_start=1
                     /product="E3 ubiquitin-protein ligase TRIM39 isoform 1"
                     /protein_id="NP_067076.2"
                     /db_xref="GI:25777696"
                     /db_xref="CCDS:CCDS34377.1"
                     /db_xref="GeneID:56658"
                     /db_xref="HGNC:10065"
                     /db_xref="HPRD:09298"
                     /db_xref="MIM:605700"
                     /translation="
MAETSLLEAGASAASTAAALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKKPGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRRDLAHLAAEVEGKCLQSGFEMLKDVKSTLEKNIPRKFGGSLSTICPRDHKALLGLVKEINRCEKVKTMEVTSVSIELEKNFSNFPRQYFALRKILKQLIADVTLDPETAHPNLVLSEDRKSVKFVETRLRDLPDTPRRFTFYPCVLATEGFTSGRHYWEVEVGDKTHWAVGVCRDSVSRKGELTPLPETGYWRVRLWNGDKYAATTTPFTPLHIKVKPKRVGIFLDYEAGTLSFYNVTDRSHIYTFTDTFTEKLWPLFYPGIRAGRKNAAPLTIRPPTDWE
"
     misc_feature    394..528
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /note="RING-finger (Really Interesting New Gene) domain, a
                     specialized type of Zn-finger of 40 to 60 residues that
                     binds two atoms of zinc; defined by the 'cross-brace'
                     motif C-X2-C-X(9-39)-C-X(1-3)-
                     H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
                     in...; Region: RING; cd00162"
                     /db_xref="CDD:29102"
     misc_feature    394..525
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /note="Zinc finger, C3HC4 type (RING finger); Region:
                     zf-C3HC4_2; pfam13923"
                     /db_xref="CDD:206094"
     misc_feature    order(397..399,406..408,442..444,448..450,457..459,
                     466..468,508..510,517..519)
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /note="cross-brace motif; other site"
                     /db_xref="CDD:29102"
     misc_feature    628..741
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /note="B-Box-type zinc finger; zinc binding domain
                     (CHC3H2); often present in combination with other motifs,
                     like RING zinc finger, NHL motif, coiled-coil or RFP
                     domain in functionally unrelated proteins, most likely
                     mediating protein-protein interaction; Region: BBOX;
                     cd00021"
                     /db_xref="CDD:28905"
     misc_feature    order(631..633,640..642,697..699,715..717)
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /note="Zn2+ binding site [ion binding]; other site"
                     /db_xref="CDD:28905"
     misc_feature    739..>1110
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /note="ATP synthase B/B' CF(0); Region: ATP-synt_B;
                     cl07975"
                     /db_xref="CDD:212286"
     misc_feature    1327..1476
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /note="SPRY-associated domain; Region: PRY; pfam13765"
                     /db_xref="CDD:205938"
     misc_feature    1480..1806
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /note="Domain in SPla and the RYanodine Receptor; Region:
                     SPRY; smart00449"
                     /db_xref="CDD:128725"
     misc_feature    1627..1629
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="phosphorylation site"
                     /citation=[8]
     variation       343
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:79621337"
     variation       344
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:138653548"
     variation       492
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:202059196"
     variation       557
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372556521"
     variation       723
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:1264581"
     variation       730
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376721046"
     variation       747
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2057727"
     exon            766..861
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /inference="alignment:Splign:1.39.8"
     variation       821
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377759954"
     variation       829
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:202142956"
     variation       833
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:139957931"
     exon            862..1092
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /inference="alignment:Splign:1.39.8"
     variation       893
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:145694007"
     variation       955
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374179491"
     variation       1006
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:192411663"
     variation       1030
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:56405317"
     variation       1054
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:71561373"
     exon            1093..1115
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /inference="alignment:Splign:1.39.8"
     exon            1116..1205
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /inference="alignment:Splign:1.39.8"
     variation       1117
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:144233854"
     variation       1162
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:148705441"
     exon            1206..1321
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /inference="alignment:Splign:1.39.8"
     variation       1250
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:61758102"
     variation       1271
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:151317560"
     exon            1322..3339
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /inference="alignment:Splign:1.39.8"
     variation       1341
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2074474"
     variation       1363
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:115963942"
     variation       1379
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:199883161"
     variation       1415
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146617150"
     variation       1512
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201329517"
     variation       1521
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:182918258"
     variation       1536
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:375516133"
     variation       1600..1601
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace=""
                     /replace="g"
                     /db_xref="dbSNP:138936035"
     variation       1701
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368672697"
     variation       1710
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:140287492"
     variation       1722
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368377696"
     variation       1843
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200960278"
     variation       1900
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:375720811"
     variation       1910
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:367910271"
     variation       1917
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:6920005"
     variation       1930
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:116158209"
     variation       1952
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:186782220"
     variation       2048..2049
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:35439125"
     variation       2127
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:111893696"
     variation       2288
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:139500656"
     variation       2296
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:191371462"
     variation       2333
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:2240058"
     variation       2386
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375963757"
     variation       2413
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:28752116"
     variation       2460
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:143299125"
     variation       2483
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:183237486"
     variation       2533
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:187712859"
     variation       2540
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146720860"
     variation       2637..2638
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace=""
                     /replace="ct"
                     /db_xref="dbSNP:373545549"
     variation       2678
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:140362243"
     variation       2765
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:115017778"
     variation       2925
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:375533569"
     variation       3098
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:12100"
     variation       3315
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:145555817"
     variation       3330
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:1130057"
     polyA_site      3339
                     /gene="TRIM39"
                     /gene_synonym="RNF23; TFP; TRIM39B"
ORIGIN      
cccagcttccactgacacgagcctcggcgcggcttccgcttccggcgagtattgtgtgtcgcgccgcggggcgggggcgaggggaggaggaaggagggaggcagcgctccggcggctccgcgccccgcactcccggacccgaagccgggaagattcctttcttgtctgttagaaacgtatgtcaaacgaggatacagtgtctggaactattggttctaagatataagtggaatgagcctggatcaggagaagtatgctgagctagagttgaaggaagcttctctttctaacaagagaaagcagagttaaattatggcagagacaagtctgttagaggctggggcctctgcagcctctacagctgcggctttggagaacttacaggtggaggcgagctgctctgtgtgcctggagtatctgaaggaacctgtcatcattgagtgtgggcacaacttctgcaaagcttgcatcacccgctggtgggaggacctagagagggacttcccttgtcctgtctgtcgaaagacatcccgctaccgcagtctccgacctaatcggcaactaggcagtatggtggaaattgccaagcagctccaggccgtcaagcggaagatccgggatgagagcctctgcccccaacaccatgaggccctcagccttttctgttatgaggaccaggaggctgtatgcttgatatgtgcaatttcccacacccaccgggcccacaccgttgtgccactggacgatgctacacaggagtacaaggaaaaactgcagaagtgtctggagcccctggaacagaagctgcaggagatcactcgctgcaagtcctctgaggagaagaagcctggtgagctcaagagactagtggaaagtcgccgacagcagatcttgagggagtttgaagagcttcataggcggctggatgaagagcagcaggtgttgctttcacgactggaagaagaggaacaggacattctgcagcgactccgagaaaatgctgctcaccttggggacaagcgccgggacctggcccacttggctgccgaggtggagggcaagtgcttacagtcaggcttcgagatgcttaaggatgtcaaaagtaccctggaaaagaatattcctagaaagttcggaggctcactctcaacgatctgtccacgggatcataaggctctccttggattagtaaaagaaatcaacagatgtgaaaaggtgaagaccatggaggtgacttcagtatccatagagctggaaaagaacttcagcaattttccccgacagtactttgccctaaggaaaatccttaaacagctaattgcggatgtgaccctggaccctgagacagctcatcctaacctagtcctgtcagaggatcgtaagagcgtcaagttcgtggagacaagactccgggatctccctgacacaccaaggcgtttcaccttctacccttgcgtcctggctactgagggtttcacctcaggtcgacactactgggaggtggaggtgggcgacaagacccactgggcagtgggtgtatgccgggactccgtgagccgaaagggcgagttgactccactccctgagactggctactggcgggtgcggctatggaatggggacaaatatgcagccaccaccacaccttttacccctttgcacatcaaggtgaaacccaagcgggtaggcatattcctagactatgaggccggcacactgtctttctacaatgtcacagaccgctctcatatctacaccttcactgatacttttactgagaaactttggcccctcttctacccaggcatccgggctggacggaagaatgctgcaccacttaccatcaggcccccaacagattgggagtgacaggttgggatgtgggaatgactggggtgaggcagggtcaagtgctacgggcctccttcccgtgtcctgctggaacgtcttcgtgtccacctgggtccagtcctgaatcatcttggagaaacaccttggtttctaggatggttttgtgtggagggggaggtaggactgggctggatgagagagcacagctgtgacttcctcctaactgtcagggtggggagctggttcccagaggattgtctaccctgaagtccatcaggttttctgttgcacaaggacgggtcaggaaggaaggagaggcttttccagaaacaaaaaatctgtgagggtctgacttgctcaaaccagaggaggaaacagaaacccctgcacatctttttagggggttctttgacccaggatagtcttgcttcttgaggtagatcacaggggtctgtgtacctctgaattcatgagagatgaatgacagatgctctcatgggtctagatattgaggagtttttctgagggcagagattggacatcaacaaggctagaagggtcagggaagtgggctaaaggaacagattcctagagattaatgaagaggagggaggtttctttggtcttctattccaagggtaaggttgcgattatgggtaagattggccagaggtaggaatgtggggagaaggagaggctgaaaagaaagcagaggagaacccaggtccctgcctcagccttcagcagagttggcttattgcctgcctctataccaataagtcagtcaccttgctcctctccagaggcaaagtggaagagatcctgcaagacacatctatcctttcacagtgttcccaagggaacttggaaaggagagtcaggtattagaggaaagagaagggtatttgtatacaaagccctggccttaaagaatgttacttagtagctactcccaaattgtcagccttcttacctggccaaggtgtccaagccagaaaggaaaaaaggttatggagtctttctcaccctaaggacagggtggaagagggtggtatatagggaagggccagataggcaacttcatttggcttgtgtgcatctggcctggaactggtgttaagccaggcttttgcttgtttgttgccatccctcaccctttgccatttcccttttcagagaatgtaaatgattttcatgttaggccaaaataaacaacttatagggtacatatgttgtcataaaaggtaaaagtgatgcatgccaaaccaaactaaaccaatttggattatctgctattcgggtaatcttcacagaaatgactgagagaagaatctgcagtttactgagggcatttcagttcctcctaccacctcaacaggactttgtccagactctcctcctcttacctttgtgccttgactgtggttctttgtggcaagatactttggttggttaaaataatatggaacaaaggatccactgaagtgaaaaaaaaaaaaaaaa
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:56658 -> Molecular function: GO:0003674 [molecular_function] evidence: ND
            GeneID:56658 -> Molecular function: GO:0005515 [protein binding] evidence: IPI
            GeneID:56658 -> Molecular function: GO:0008270 [zinc ion binding] evidence: IEA
            GeneID:56658 -> Molecular function: GO:0016874 [ligase activity] evidence: IEA
            GeneID:56658 -> Molecular function: GO:0042802 [identical protein binding] evidence: IPI
            GeneID:56658 -> Biological process: GO:0006915 [apoptotic process] evidence: IEA
            GeneID:56658 -> Biological process: GO:0008150 [biological_process] evidence: ND
            GeneID:56658 -> Biological process: GO:0016567 [protein ubiquitination] evidence: IEA
            GeneID:56658 -> Cellular component: GO:0005575 [cellular_component] evidence: ND
            GeneID:56658 -> Cellular component: GO:0005739 [mitochondrion] evidence: IEA
            GeneID:56658 -> Cellular component: GO:0005829 [cytosol] evidence: IEA

by @meso_cacase at DBCLS
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