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2024-04-25 20:17:17, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_020872               4997 bp    mRNA    linear   PRI 14-MAY-2013
DEFINITION  Homo sapiens contactin 3 (plasmacytoma associated) (CNTN3), mRNA.
ACCESSION   NM_020872 XM_039627
VERSION     NM_020872.1  GI:75709183
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 4997)
  AUTHORS   Boal,F. and Stephens,D.J.
  TITLE     Specific functions of BIG1 and BIG2 in endomembrane organization
  JOURNAL   PLoS ONE 5 (3), E9898 (2010)
   PUBMED   20360857
  REMARK    GeneRIF: BIG1 and BIG2 have roles in endomembrane organization
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4997)
  AUTHORS   Gratacos,M., Costas,J., de Cid,R., Bayes,M., Gonzalez,J.R.,
            Baca-Garcia,E., de Diego,Y., Fernandez-Aranda,F.,
            Fernandez-Piqueras,J., Guitart,M., Martin-Santos,R., Martorell,L.,
            Menchon,J.M., Roca,M., Saiz-Ruiz,J., Sanjuan,J., Torrens,M.,
            Urretavizcaya,M., Valero,J., Vilella,E., Estivill,X. and
            Carracedo,A.
  CONSRTM   Psychiatric Genetics Network Group
  TITLE     Identification of new putative susceptibility genes for several
            psychiatric disorders by association analysis of regulatory and
            non-synonymous SNPs of 306 genes involved in neurotransmission and
            neurodevelopment
  JOURNAL   Am. J. Med. Genet. B Neuropsychiatr. Genet. 150B (6), 808-816
            (2009)
   PUBMED   19086053
  REMARK    GeneRIF: Observational study of gene-disease association. (HuGE
            Navigator)
REFERENCE   3  (bases 1 to 4997)
  AUTHORS   Elmore,J.R., Obmann,M.A., Kuivaniemi,H., Tromp,G., Gerhard,G.S.,
            Franklin,D.P., Boddy,A.M. and Carey,D.J.
  TITLE     Identification of a genetic variant associated with abdominal
            aortic aneurysms on chromosome 3p12.3 by genome wide association
  JOURNAL   J. Vasc. Surg. 49 (6), 1525-1531 (2009)
   PUBMED   19497516
  REMARK    GeneRIF: Observational study and genome-wide association study of
            gene-disease association. (HuGE Navigator)
REFERENCE   4  (bases 1 to 4997)
  AUTHORS   Osterfield,M., Egelund,R., Young,L.M. and Flanagan,J.G.
  TITLE     Interaction of amyloid precursor protein with contactins and NgCAM
            in the retinotectal system
  JOURNAL   Development 135 (6), 1189-1199 (2008)
   PUBMED   18272596
REFERENCE   5  (bases 1 to 4997)
  AUTHORS   Muzny,D.M., Scherer,S.E., Kaul,R., Wang,J., Yu,J., Sudbrak,R.,
            Buhay,C.J., Chen,R., Cree,A., Ding,Y., Dugan-Rocha,S., Gill,R.,
            Gunaratne,P., Harris,R.A., Hawes,A.C., Hernandez,J., Hodgson,A.V.,
            Hume,J., Jackson,A., Khan,Z.M., Kovar-Smith,C., Lewis,L.R.,
            Lozado,R.J., Metzker,M.L., Milosavljevic,A., Miner,G.R.,
            Morgan,M.B., Nazareth,L.V., Scott,G., Sodergren,E., Song,X.Z.,
            Steffen,D., Wei,S., Wheeler,D.A., Wright,M.W., Worley,K.C.,
            Yuan,Y., Zhang,Z., Adams,C.Q., Ansari-Lari,M.A., Ayele,M.,
            Brown,M.J., Chen,G., Chen,Z., Clendenning,J.,
            Clerc-Blankenburg,K.P., Chen,R., Chen,Z., Davis,C., Delgado,O.,
            Dinh,H.H., Dong,W., Draper,H., Ernst,S., Fu,G.,
            Gonzalez-Garay,M.L., Garcia,D.K., Gillett,W., Gu,J., Hao,B.,
            Haugen,E., Havlak,P., He,X., Hennig,S., Hu,S., Huang,W.,
            Jackson,L.R., Jacob,L.S., Kelly,S.H., Kube,M., Levy,R., Li,Z.,
            Liu,B., Liu,J., Liu,W., Lu,J., Maheshwari,M., Nguyen,B.V.,
            Okwuonu,G.O., Palmeiri,A., Pasternak,S., Perez,L.M., Phelps,K.A.,
            Plopper,F.J., Qiang,B., Raymond,C., Rodriguez,R.,
            Saenphimmachak,C., Santibanez,J., Shen,H., Shen,Y., Subramanian,S.,
            Tabor,P.E., Verduzco,D., Waldron,L., Wang,J., Wang,J., Wang,Q.,
            Williams,G.A., Wong,G.K., Yao,Z., Zhang,J., Zhang,X., Zhao,G.,
            Zhou,J., Zhou,Y., Nelson,D., Lehrach,H., Reinhardt,R., Naylor,S.L.,
            Yang,H., Olson,M., Weinstock,G. and Gibbs,R.A.
  TITLE     The DNA sequence, annotation and analysis of human chromosome 3
  JOURNAL   Nature 440 (7088), 1194-1198 (2006)
   PUBMED   16641997
REFERENCE   6  (bases 1 to 4997)
  AUTHORS   Liu,T., Qian,W.J., Gritsenko,M.A., Camp,D.G. II, Monroe,M.E.,
            Moore,R.J. and Smith,R.D.
  TITLE     Human plasma N-glycoproteome analysis by immunoaffinity
            subtraction, hydrazide chemistry, and mass spectrometry
  JOURNAL   J. Proteome Res. 4 (6), 2070-2080 (2005)
   PUBMED   16335952
REFERENCE   7  (bases 1 to 4997)
  AUTHORS   Kamei,Y., Takeda,Y., Teramoto,K., Tsutsumi,O., Taketani,Y. and
            Watanabe,K.
  TITLE     Human NB-2 of the contactin subgroup molecules: chromosomal
            localization of the gene (CNTN5) and distinct expression pattern
            from other subgroup members
  JOURNAL   Genomics 69 (1), 113-119 (2000)
   PUBMED   11013081
REFERENCE   8  (bases 1 to 4997)
  AUTHORS   Mock,B.A., Connelly,M.A., McBride,O.W., Kozak,C.A. and Marcu,K.B.
  TITLE     Plasmacytoma-associated neuronal glycoprotein, Pang, maps to mouse
            chromosome 6 and human chromosome 3
  JOURNAL   Genomics 34 (2), 226-228 (1996)
   PUBMED   8661054
REFERENCE   9  (bases 1 to 4997)
  AUTHORS   Yoshihara,Y., Kawasaki,M., Tamada,A., Nagata,S., Kagamiyama,H. and
            Mori,K.
  TITLE     Overlapping and differential expression of BIG-2, BIG-1, TAG-1, and
            F3: four members of an axon-associated cell adhesion molecule
            subgroup of the immunoglobulin superfamily
  JOURNAL   J. Neurobiol. 28 (1), 51-69 (1995)
   PUBMED   8586965
REFERENCE   10 (bases 1 to 4997)
  AUTHORS   Connelly,M.A., Grady,R.C., Mushinski,J.F. and Marcu,K.B.
  TITLE     PANG, a gene encoding a neuronal glycoprotein, is ectopically
            activated by intracisternal A-type particle long terminal repeats
            in murine plasmacytomas
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 91 (4), 1337-1341 (1994)
   PUBMED   8108413
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AC128653.5, DR002512.1, AB040929.1 and BX951442.1.
            On Sep 16, 2005 this sequence version replaced gi:51463861.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC150608.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           ERS025084 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-92                AC128653.5         95207-95298         c
            93-403              DR002512.1         40-350
            404-2512            AB040929.1         1-2109
            2513-2670           BX951442.1         115-272
            2671-4997           AB040929.1         2268-4594
FEATURES             Location/Qualifiers
     source          1..4997
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="3"
                     /map="3p12.3"
     gene            1..4997
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="contactin 3 (plasmacytoma associated)"
                     /db_xref="GeneID:5067"
                     /db_xref="HGNC:2173"
                     /db_xref="MIM:601325"
     exon            1..135
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    3..5
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="upstream in-frame stop codon"
     variation       complement(37)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:375828038"
     variation       complement(64)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372818010"
     CDS             81..3167
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="plasmacytoma-associated neuronal glycoprotein;
                     contactin-3; brain-derived immunoglobulin superfamily
                     protein 1"
                     /codon_start=1
                     /product="contactin-3 precursor"
                     /protein_id="NP_065923.1"
                     /db_xref="GI:75709184"
                     /db_xref="CCDS:CCDS33790.1"
                     /db_xref="GeneID:5067"
                     /db_xref="HGNC:2173"
                     /db_xref="MIM:601325"
                     /translation="
MMFPWKQLILLSFIGCLGGELLLQGPVFIKEPSNSIFPVGSEDKKITLHCEARGNPSPHYRWQLNGSDIDMSMEHRYKLNGGNLVVINPNRNWDTGTYQCFATNSLGTIVSREAKLQFAYLENFKTKMRSTVSVREGQGVVLLCGPPPHSGELSYAWIFNEYPSFVEEDSRRFVSQETGHLYISKVEPSDVGNYTCVVTSMVTNARVLGSPTPLVLRSDGVMGEYEPKIEVQFPETLPAAKGSTVKLECFALGNPIPQINWRRSDGLPFSSKIKLRKFSGVLEIPNFQQEDAGSYECIAENSRGKNVARGRLTYYAKPHWVQLIKDVEIAVEDSLYWECRASGKPKPSYRWLKNGAALVLEERTQIENGALTISNLSVTDSGMFQCIAENKHGLVYSSAELKVVASAPDFSKNPMKKLVQVQVGSLVSLDCKPRASPRALSSWKKGDVSVQEHERISLLNDGGLKIANVTKADAGTYTCMAENQFGKANGTTHLVVTEPTRITLAPSNMDVSVGESVILPCQVQHDPLLDIIFTWYFNGALADFKKDGSHFEKVGGSSSGDLMIRNIQLKHSGKYVCMVQTGVDSVSSAADLIVRGSPGPPENVKVDEITDTTAQLSWKEGKDNHSPVISYSIQARTPFSVGWQTVTTVPEVIDGKTHTATVVELNPWVEYEFRVVASNKIGGGEPSLPSEKVRTEEAVPEVPPSEVNGGGGSRSELVITWDPVPEELQNGEGFGYVVAFRPLGVTTWIQTVVTSPDTPRYVFRNESIVPYSPYEVKVGVYNNKGEGPFSPVTTVFSAEEEPTVAPSQVSANSLSSSEIEVSWNTIPWKLSNGHLLGYEVRYWNGGGKEESSSKMKVAGNETSARLRGLKSNLAYYTAVRAYNSAGAGPFSATVNVTTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSMDARGSTSAISNVHPMSSYMPIVLFLIVYVLW
"
     sig_peptide     81..137
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="COORDINATES: ab initio prediction:SignalP:4.0"
     mat_peptide     138..3086
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /product="Contactin-3"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q9P232.3)"
     misc_feature    153..422
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:213125"
     misc_feature    156..431
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:191810"
     misc_feature    438..722
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:213125"
     misc_feature    759..1025
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:213125"
     misc_feature    759..1019
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:191810"
     misc_feature    1032..1289
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:191810"
     misc_feature    1038..1289
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:213125"
     misc_feature    1371..1568
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:213125"
     misc_feature    1581..1862
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Immunoglobulin I-set domain; Region: I-set;
                     pfam07679"
                     /db_xref="CDD:191810"
     misc_feature    1623..1874
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Immunoglobulin domain; Region: Ig; cl11960"
                     /db_xref="CDD:213125"
     misc_feature    1872..2153
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:28945"
     misc_feature    order(1872..1874,2079..2081,2124..2126)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Interdomain contacts; other site"
                     /db_xref="CDD:28945"
     misc_feature    order(2127..2132,2136..2141)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Cytokine receptor motif; other site"
                     /db_xref="CDD:28945"
     misc_feature    2217..2465
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:28945"
     misc_feature    order(2388..2390,2433..2435)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Interdomain contacts; other site"
                     /db_xref="CDD:28945"
     misc_feature    order(2436..2441,2445..2450)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Cytokine receptor motif; other site"
                     /db_xref="CDD:28945"
     misc_feature    2493..2774
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:28945"
     misc_feature    order(2691..2693,2736..2738)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Interdomain contacts; other site"
                     /db_xref="CDD:28945"
     misc_feature    order(2739..2744,2748..2753)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Cytokine receptor motif; other site"
                     /db_xref="CDD:28945"
     misc_feature    2787..3053
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Fibronectin type 3 domain; One of three types of
                     internal repeats found in the plasma protein fibronectin.
                     Its tenth fibronectin type III repeat contains an RGD cell
                     recognition sequence in a flexible loop between 2 strands.
                     Approximately 2% of all...; Region: FN3; cd00063"
                     /db_xref="CDD:28945"
     misc_feature    order(2787..2789,2976..2978,3021..3023)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Interdomain contacts; other site"
                     /db_xref="CDD:28945"
     misc_feature    order(3024..3029,3033..3038)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /note="Cytokine receptor motif; other site"
                     /db_xref="CDD:28945"
     exon            136..262
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(146)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:138223664"
     variation       complement(202)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:373612458"
     variation       complement(206)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:138596182"
     variation       complement(210)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372369990"
     variation       complement(224)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:200916417"
     variation       complement(238)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:370191030"
     variation       complement(245)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:141015807"
     exon            263..438
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(266)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:376191646"
     variation       complement(283)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372925187"
     variation       complement(303)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:151030773"
     variation       complement(307)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374611056"
     variation       complement(321)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:370368643"
     variation       complement(362)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:200260713"
     variation       complement(374)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:370106424"
     variation       complement(377)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376013441"
     variation       complement(418)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:373879235"
     variation       complement(438)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201290178"
     exon            439..534
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(466)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:140528609"
     variation       complement(473)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:202217926"
     variation       complement(512)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200292687"
     exon            535..738
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(584)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:371252302"
     variation       complement(592)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:367688857"
     variation       complement(627)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:201466963"
     variation       complement(641)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:140108637"
     variation       complement(651)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:79599011"
     variation       complement(700)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:207463214"
     variation       complement(728)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:149691179"
     exon            739..841
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(771)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:9858476"
     variation       complement(805)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:150505018"
     variation       complement(808)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:139461362"
     variation       complement(816)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:62620465"
     variation       complement(830)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200661406"
     variation       complement(838..839)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace=""
                     /replace="g"
                     /db_xref="dbSNP:34547833"
     exon            842..1026
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(886)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:370482178"
     variation       complement(887)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:376358653"
     variation       complement(937)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374749740"
     variation       complement(953)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:370322691"
     variation       complement(954)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:370041595"
     variation       complement(972)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:369817772"
     variation       complement(1024)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:112139954"
     exon            1027..1163
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(1058)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:143146733"
     variation       complement(1070)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:138191723"
     variation       complement(1072)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375774653"
     variation       complement(1107)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372275773"
     variation       complement(1135)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:111455798"
     variation       complement(1156)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:373040494"
     exon            1164..1293
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(1190)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:140460231"
     variation       complement(1235)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:6549590"
     variation       complement(1275)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:371285744"
     variation       complement(1277)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:372335102"
     exon            1294..1444
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(1323)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:142940157"
     variation       complement(1328)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:144924187"
     variation       complement(1388)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:372933850"
     variation       complement(1391)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:139447821"
     variation       complement(1427)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:150922997"
     variation       complement(1428)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200380587"
     exon            1445..1572
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(1461)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:187262258"
     variation       complement(1472)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:199868405"
     variation       complement(1480)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:139470091"
     variation       complement(1542)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200992823"
     variation       complement(1546)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:150593292"
     variation       complement(1570)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:148034625"
     variation       complement(1571)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201566317"
     exon            1573..1748
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(1600)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:200087609"
     variation       complement(1620)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:76983796"
     variation       complement(1629)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:142080236"
     variation       complement(1646)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377021413"
     variation       complement(1660)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:199555851"
     variation       complement(1661)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:145013741"
     variation       complement(1693)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:371273324"
     variation       complement(1696)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:192637506"
     exon            1749..1866
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(1776)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:111949794"
     variation       complement(1830)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376704849"
     variation       complement(1844)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:75253024"
     exon            1867..2025
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(1890)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:140530465"
     variation       complement(1928)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:145131576"
     variation       complement(1954)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:74507713"
     variation       complement(1958)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:199848451"
     variation       complement(1986)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:144093273"
     variation       complement(1987)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:139142211"
     variation       complement(1993)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:142014911"
     variation       complement(2001)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:187249178"
     variation       complement(2015)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:146095571"
     variation       complement(2016)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148089886"
     exon            2026..2175
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(2034)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200530668"
     variation       complement(2040)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201998015"
     variation       complement(2050)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:139861462"
     variation       complement(2051)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:111626135"
     variation       complement(2065)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:147790729"
     variation       complement(2068)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:74870889"
     variation       complement(2106)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:140661839"
     variation       complement(2113)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:190067654"
     variation       complement(2125)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:376260466"
     exon            2176..2246
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(2179..2180)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:36050952"
     variation       complement(2203)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:626578"
     exon            2247..2481
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(2273)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:150766099"
     variation       complement(2285)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:146077359"
     variation       complement(2353)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:139253363"
     variation       complement(2384)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:190326209"
     variation       complement(2385)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201119005"
     variation       complement(2414)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:141569409"
     variation       complement(2453)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201589120"
     variation       complement(2477)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:202118462"
     exon            2482..2597
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(2513)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:10490832"
     STS             2561..3091
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /standard_name="Cntn3"
                     /db_xref="UniSTS:546702"
     variation       complement(2575)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:149071598"
     variation       complement(2576)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:370021008"
     variation       complement(2581)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200983216"
     exon            2598..2784
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(2600)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:187805933"
     variation       complement(2602)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:199931035"
     variation       complement(2616)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:150305367"
     variation       complement(2679)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:146746763"
     variation       complement(2680)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:143021649"
     variation       complement(2684)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:372920888"
     variation       complement(2738)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:142860919"
     variation       complement(2739)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:370366005"
     variation       complement(2744)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200308935"
     variation       complement(2753)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375731120"
     variation       complement(2754)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:375992095"
     variation       complement(2765)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:373869660"
     variation       complement(2782)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:141921900"
     variation       complement(2783)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201061027"
     exon            2785..2897
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(2786)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:112764809"
     variation       complement(2803)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200194453"
     variation       complement(2865)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:187786824"
     variation       complement(2887)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:140717445"
     exon            2898..3066
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(2903)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:149560563"
     variation       complement(2921)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:78035726"
     variation       complement(2924)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:147997730"
     variation       complement(2928)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:143508019"
     variation       complement(2933)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:144881079"
     variation       complement(2952)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376101905"
     variation       complement(2999)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:188000246"
     variation       complement(3009)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:140323434"
     variation       complement(3063)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:144731945"
     exon            3067..4997
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /inference="alignment:Splign:1.39.8"
     variation       complement(3110)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:199678199"
     variation       complement(3111)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:114454492"
     variation       complement(3114)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:140703250"
     variation       complement(3135)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:147055375"
     variation       complement(3137)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:184742317"
     variation       complement(3174)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:370312826"
     variation       complement(3176)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:1466084"
     variation       complement(3191)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:141786675"
     variation       complement(3216)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377663774"
     variation       complement(3265)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace=""
                     /replace="a"
                     /db_xref="dbSNP:371362676"
     variation       complement(3356)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:151294438"
     variation       complement(3403)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:113175665"
     variation       complement(3411)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:149215876"
     variation       complement(3449)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:145383653"
     variation       complement(3488)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374657973"
     STS             3580..3704
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /standard_name="SHGC-14155"
                     /db_xref="UniSTS:79176"
     variation       complement(3762)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:111633227"
     variation       complement(3768)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:139062632"
     STS             3819..3968
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /standard_name="RH103781"
                     /db_xref="UniSTS:98106"
     variation       complement(3916)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:193095684"
     variation       complement(4113)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:113600991"
     variation       complement(4216)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:188829245"
     variation       complement(4382)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:185100221"
     variation       complement(4501)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:516329"
     variation       complement(4579)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:112666692"
     variation       complement(4616)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:192962821"
     variation       complement(4624)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146699550"
     variation       complement(4643..4646)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace=""
                     /replace="aata"
                     /db_xref="dbSNP:72572779"
     variation       complement(4670)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:186893792"
     variation       complement(4680)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:182251992"
     variation       complement(4796)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:370774689"
     STS             4820..4950
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /standard_name="STS-D62792"
                     /db_xref="UniSTS:27542"
     variation       complement(4836)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:116186614"
     variation       complement(4860)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:150697852"
     variation       complement(4927)
                     /gene="CNTN3"
                     /gene_synonym="BIG-1; PANG; PCS"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:376340669"
ORIGIN      
attaaaggatttacctgaagagaaagcattctattcatcagagactggacaagagttactcttgcatttggcaattaaagatgatgtttccatggaaacagttgatcctgctttcattcattggctgcttaggaggtgagcttctcttacaaggccctgtatttatcaaagaacccagcaacagcattttccctgttggttcagaagataaaaaaataactttgcattgtgaagcaagaggcaatccatcacctcattacagatggcagctgaatggaagtgatattgatatgagtatggaacatcgttataagttgaatggaggaaatcttgtggttattaatcccaacagaaattgggatacaggaacttaccaatgttttgcaacaaattcacttggaacaattgtcagcagagaagccaaacttcagtttgcctatcttgaaaattttaaaaccaaaatgaggagtacagtgtctgtgcgtgaaggccagggagttgtgctgctctgcggccccccaccacactctggagaactgtcatatgcttggatcttcaatgaatacccatcgtttgttgaagaagatagtcggagatttgtctcccaggagacagggcacctctacatatctaaggtggagccgtctgatgtgggaaattacacatgtgtggtgacaagtatggtgacaaatgcccgagtgctgggctctccaactcctttggtgctacgttctgatggtgtgatgggtgaatatgaacctaaaatagaagttcagtttccagaaactcttccagcagctaaaggttcgactgtgaaattggaatgttttgcccttggaaatcccatacctcagattaattggagaagaagtgatgggctgccattttccagcaaaattaaattaaggaagttcagtggtgtgcttgaaatccccaacttccaacaggaagatgcaggttcctatgaatgcattgctgagaattcacgaggaaaaaatgttgccagagggcgtctcacttactatgcaaagccccattgggttcaactcataaaggatgtggaaatagccgtggaggacagtctttattgggaatgcagggcaagcggcaagcccaagccttcctaccgatggctgaaaaatggagcagccctggtgctagaggagagaacacagatagaaaatggtgcccttacaatatcaaacctaagtgtgactgattctggcatgttccagtgcatagcagaaaacaaacatggccttgtttattccagtgctgagctcaaagttgttgcttctgctccagatttttcaaagaatccaatgaagaagttggttcaggtgcaggtgggcagcctggtcagcttggattgtaaacccagagcctccccaagggcactctcttcctggaagaagggggatgtgagcgtgcaggagcatgaaagaatttctttgttaaacgatggaggactcaaaatagccaatgtgactaaagctgatgctggaacttacacctgcatggcagaaaaccagtttgggaaagcaaatggcacaacacatttggttgttacggaaccaacaagaataactttggcaccatctaacatggatgtttctgttggtgaaagcgtcatattgccctgccaggtacaacatgacccgctgttagacatcatctttacctggtatttcaatggggcccttgcagattttaagaaagatggatctcactttgagaaagttggtgggagttcatctggtgatttaatgatcagaaacattcagctgaaacacagtgggaaatatgtttgtatggtgcaaacgggggtggacagtgtttcatctgctgctgacctcatagtaagaggttcacctggaccaccagaaaatgtgaaggtagatgaaattacagacacaacagcccaactctcttggaaagaaggtaaagacaaccatagcccagttatatcctattctatccaggctcggacacctttctccgtgggttggcaaaccgtcacaacagtgcctgaggtcatcgatgggaagacgcacacagccactgtagttgagttaaacccatgggtggaatatgaatttcgggttgtagccagtaacaaaattggaggtggagaaccaagtttaccctcagaaaaagtaagaactgaagaggcagttccagaagtgcctccttctgaagtcaatggaggaggcggaagccggtctgaacttgtgataacctgggatccagtccctgaagaactacagaatggtgaaggttttgggtatgttgttgctttccgccctcttggggttaccacctggatccagacagtggtgacatcccctgacaccccaagatatgtctttaggaatgaaagcatcgtgccatattcaccatatgaagttaaagtgggtgtttataataacaaaggtgaaggaccatttagcccagtgacaacagtgttctctgcagaagaagagcctacagtggccccatctcaagtctctgcaaatagcctatcttcctcagaaattgaggtttcatggaacaccattccttggaagttgagcaatggacatttactgggctatgaggtgcggtactggaatgggggtggaaaggaggaatcatccagtaagatgaaagtggcaggaaatgagacatcagccagactacggggcctgaagagcaacctggcctattacacggctgtccgggcttacaacagtgccggcgctgggccttttagcgccacagttaatgtaaccaccaagaaaacgcctcccagtcagccaccaggaaatgttgtttggaatgccacagacactaaagtgttacttaattgggagcaagttaaagccatggagaatgagtcagaagtaacaggatataaagttttctataggactagcagtcaaaataacgtacaagtactgaacacaaataaaacttcagctgaacttgtgctgcccattaaagaggactacattattgaagtcaaggccacaacagatggaggggatgggaccagtagtgaacagatcaggattccacgaataaccagtatggatgcaagaggatccacttcagccatctcgaatgtccaccctatgtcaagttatatgcctatagtactgttcttaattgtatatgtcctgtggtgatattaactcctttttattatttattggaaagttatttggttaccaaaaaaagtgctttcatgaaatgcagtgattatgcatgtttttttcaactcttatttttaactttctacttcattataggtaaatatgaatataattaaaaaaacagtaaatccttttaggggaatctgaaatgccttaatattaacttgataaaccaaaggaatttacatattacatacttcagacttttgatataaatgttcttaaactatgagtttaagcactgcctatggataaagactcacacactctcacatgtacacacacacgcatgagaatttctttttacattgaaaaactctttcatttaattcaaatgctattttcccattataatagcattatttggaagacttaaccagtatcaatttgaaatgctgatttaagtccccaaggatgaaaaatacattttaaaaattattttgttggagaggagtggcatgtgattcaaaagagcattgttggaaaatgctactgtggggcttagaagaatgatgtttggtttggtatgctgctaactagttgtaagactttacaaatcactttgccatctgtacctctcaattattcctctataaaatatggagataataatacctatctgatcagactttgccccatgaattagtttttaaaagataaagactgaagtatgaaagtgcttttgtcaccccaaatgcaattgacccatgcaaaatattagcatgaatttatttaatcacataaaagtcatgaagaccagccagattttcaagcttcattctgtttcattcagttatattccaaaattcaaatgatcacattttattctttctcaaaaaaaaaaagtttttttaaattaaaaaaggaattgtttccttcacagctatgaataagctttcaggttttattaaaacctagaggaaaaaatcaggaatgacctgaatctcaacccaaatattaaacaaaatccacataatccctcatttcaatttccaattccattaagggaccctctctttttggatggcagagatggttttttaatgaaatcccaccatctatctgagtgagtctggcaggctttttagttcctgagttaaatttgtaatagaaccaaggcaatgctgctgactttgatatgtatgactcagtctttcaatatgtggttttcaaaaaattgttgaagacgtgacttcatagcaatatatagagaataaattaaaatcagcagattgagttttcaacattgcaaaatcagttttttacctctttcctaccaatttcacattttgcagaaacttgttcacatttccaacaatatcagaattagaaaacagttcagataacaagaaagattaaaaattagggaaattctgatatcaccataaagcactattttacatttagagattacatttaagataaagtcatcatacacaaaaacaataaatatttataactttctctataaggtccgcatatactgtatatattgaaacaatctgaatgactagtagatttcatatgaccattgttatttccactttctccaatacttgtattttatgctacatgtaatgaagttggacctttttattatttagtaattcctatatgttcctatacttttcattttcaagatgattgctctattgtttcatgttgtttctagcaatatatctccatgagatatgcactttgtttcatattgaaaagtataaaatttatctttcaattcctgtgtgtgtatcctatggttatctgtatgtattattttctattctaataaaatttataacaagc
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:5067 -> Biological process: GO:0007155 [cell adhesion] evidence: IEA
            GeneID:5067 -> Biological process: GO:0007399 [nervous system development] evidence: IEA
            GeneID:5067 -> Cellular component: GO:0005886 [plasma membrane] evidence: IEA
            GeneID:5067 -> Cellular component: GO:0031225 [anchored to membrane] evidence: IEA

by @meso_cacase at DBCLS
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