2024-03-29 06:21:09, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_020524 3213 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens pre-B-cell leukemia homeobox interacting protein 1 (PBXIP1), mRNA. ACCESSION NM_020524 VERSION NM_020524.2 GI:19923829 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3213) AUTHORS Manavathi,B., Lo,D., Bugide,S., Dey,O., Imren,S., Weiss,M.J. and Humphries,R.K. TITLE Functional regulation of pre-B-cell leukemia homeobox interacting protein 1 (PBXIP1/HPIP) in erythroid differentiation JOURNAL J. Biol. Chem. 287 (8), 5600-5614 (2012) PUBMED 22187427 REMARK GeneRIF: HPIP is a target of GATA1 and CTCF in erythroid cells and plays an important role in erythroid differentiation by modulating the PI3K/AKT pathway REFERENCE 2 (bases 1 to 3213) AUTHORS Venkatesan,K., Rual,J.F., Vazquez,A., Stelzl,U., Lemmens,I., Hirozane-Kishikawa,T., Hao,T., Zenkner,M., Xin,X., Goh,K.I., Yildirim,M.A., Simonis,N., Heinzmann,K., Gebreab,F., Sahalie,J.M., Cevik,S., Simon,C., de Smet,A.S., Dann,E., Smolyar,A., Vinayagam,A., Yu,H., Szeto,D., Borick,H., Dricot,A., Klitgord,N., Murray,R.R., Lin,C., Lalowski,M., Timm,J., Rau,K., Boone,C., Braun,P., Cusick,M.E., Roth,F.P., Hill,D.E., Tavernier,J., Wanker,E.E., Barabasi,A.L. and Vidal,M. TITLE An empirical framework for binary interactome mapping JOURNAL Nat. Methods 6 (1), 83-90 (2009) PUBMED 19060904 REFERENCE 3 (bases 1 to 3213) AUTHORS Manavathi,B., Acconcia,F., Rayala,S.K. and Kumar,R. TITLE An inherent role of microtubule network in the action of nuclear receptor JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (43), 15981-15986 (2006) PUBMED 17043237 REFERENCE 4 (bases 1 to 3213) AUTHORS Lim,J., Hao,T., Shaw,C., Patel,A.J., Szabo,G., Rual,J.F., Fisk,C.J., Li,N., Smolyar,A., Hill,D.E., Barabasi,A.L., Vidal,M. and Zoghbi,H.Y. TITLE A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration JOURNAL Cell 125 (4), 801-814 (2006) PUBMED 16713569 REFERENCE 5 (bases 1 to 3213) AUTHORS Abramovich,C., Chavez,E.A., Lansdorp,P.M. and Humphries,R.K. TITLE Functional characterization of multiple domains involved in the subcellular localization of the hematopoietic Pbx interacting protein (HPIP) JOURNAL Oncogene 21 (44), 6766-6771 (2002) PUBMED 12360403 REFERENCE 6 (bases 1 to 3213) AUTHORS Abramovich,C., Shen,W.F., Pineault,N., Imren,S., Montpetit,B., Largman,C. and Humphries,R.K. TITLE Functional cloning and characterization of a novel nonhomeodomain protein that inhibits the binding of PBX1-HOX complexes to DNA JOURNAL J. Biol. Chem. 275 (34), 26172-26177 (2000) PUBMED 10825160 REFERENCE 7 (bases 1 to 3213) AUTHORS Epplen,C. and Epplen,J.T. TITLE Expression of (cac)n/(gtg)n simple repetitive sequences in mRNA of human lymphocytes JOURNAL Hum. Genet. 93 (1), 35-41 (1994) PUBMED 7505766 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from BC016852.1. On Apr 4, 2002 this sequence version replaced gi:10092622. ##Evidence-Data-START## Transcript exon combination :: BC016852.1, AF221521.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025084, ERS025098 [ECO:0000348] ##Evidence-Data-END## FEATURES Location/Qualifiers source 1..3213 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="1" /map="1q21.3" gene 1..3213 /gene="PBXIP1" /gene_synonym="HPIP" /note="pre-B-cell leukemia homeobox interacting protein 1" /db_xref="GeneID:57326" /db_xref="HGNC:21199" /db_xref="HPRD:17823" exon 1..23 /gene="PBXIP1" /gene_synonym="HPIP" /inference="alignment:Splign:1.39.8" exon 24..110 /gene="PBXIP1" /gene_synonym="HPIP" /inference="alignment:Splign:1.39.8" CDS 60..2255 /gene="PBXIP1" /gene_synonym="HPIP" /note="pre-B-cell leukemia transcription factor interacting protein 1; hematopoietic PBX-interacting protein" /codon_start=1 /product="pre-B-cell leukemia transcription factor-interacting protein 1" /protein_id="NP_065385.2" /db_xref="GI:19923830" /db_xref="CCDS:CCDS1074.1" /db_xref="GeneID:57326" /db_xref="HGNC:21199" /db_xref="HPRD:17823" /translation="
MASCPDSDNSWVLAGSESLPVETLGPASRMDPESERALQAPHSPSKTDGKELAGTMDGEGTLFQTESPQSGSILTEETEVKGTLEGDVCGVEPPGPGDTVVQGDLQETTVVTGLGPDTQDLEGQSPPQSLPSTPKAAWIREEGRCSSSDDDTDVDMEGLRRRRGREAGPPQPMVPLAVENQAGGEGAGGELGISLNMCLLGALVLLGLGVLLFSGGLSESETGPMEEVERQVLPDPEVLEAVGDRQDGLREQLQAPVPPDSVPSLQNMGLLLDKLAKENQDIRLLQAQLQAQKEELQSLMHQPKGLEEENAQLRGALQQGEAFQRALESELQQLRARLQGLEADCVRGPDGVCLSGGRGPQGDKAIREQGPREQEPELSFLKQKEQLEAEAQALRQELERQRRLLGSVQQDLERSLQDASRGDPAHAGLAELGHRLAQKLQGLENWGQDPGVSANASKAWHQKSHFQNSREWSGKEKWWDGQRDRKAEHWKHKKEESGRERKKNWGGQEDREPAGRWKEGRPRVEESGSKKEGKRQGPKEPPRKSGSFHSSGEKQKQPRWREGTKDSHDPLPSWAELLRPKYRAPQGCSGVDECARQEGLTFFGTELAPVRQQELASLLRTYLARLPWAGQLTKELPLSPAFFGEDGIFRHDRLRFRDFVDALEDSLEEVAVQQTGDDDEVDDFEDFIFSHFFGDKALKKRSGKKDKHSQSPRAAGPREGHSHSHHHHHRG
" misc_feature 186..188 /gene="PBXIP1" /gene_synonym="HPIP" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (Q96AQ6.1); phosphorylation site" misc_feature 186..188 /gene="PBXIP1" /gene_synonym="HPIP" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 192..194 /gene="PBXIP1" /gene_synonym="HPIP" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 495..497 /gene="PBXIP1" /gene_synonym="HPIP" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (Q96AQ6.1); phosphorylation site" misc_feature 495..497 /gene="PBXIP1" /gene_synonym="HPIP" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 498..500 /gene="PBXIP1" /gene_synonym="HPIP" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (Q96AQ6.1); phosphorylation site" misc_feature 498..500 /gene="PBXIP1" /gene_synonym="HPIP" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 501..503 /gene="PBXIP1" /gene_synonym="HPIP" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (Q96AQ6.1); phosphorylation site" misc_feature 501..503 /gene="PBXIP1" /gene_synonym="HPIP" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature 513..515 /gene="PBXIP1" /gene_synonym="HPIP" /experiment="experimental evidence, no additional details recorded" /note="Phosphothreonine; propagated from UniProtKB/Swiss-Prot (Q96AQ6.1); phosphorylation site" misc_feature 513..515 /gene="PBXIP1" /gene_synonym="HPIP" /experiment="experimental evidence, no additional details recorded" /note="phosphorylation site" misc_feature <735..>875 /gene="PBXIP1" /gene_synonym="HPIP" /note="PEP-CTERM family integral membrane protein; Region: PEP_integral; TIGR02921" /db_xref="CDD:131967" misc_feature 1512..1574 /gene="PBXIP1" /gene_synonym="HPIP" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96AQ6.1); Region: Nuclear localization signal (Potential)" misc_feature 2142..2219 /gene="PBXIP1" /gene_synonym="HPIP" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q96AQ6.1); Region: Nuclear localization signal (Potential)" exon 111..237 /gene="PBXIP1" /gene_synonym="HPIP" /inference="alignment:Splign:1.39.8" exon 238..302 /gene="PBXIP1" /gene_synonym="HPIP" /inference="alignment:Splign:1.39.8" exon 303..468 /gene="PBXIP1" /gene_synonym="HPIP" /inference="alignment:Splign:1.39.8" exon 469..702 /gene="PBXIP1" /gene_synonym="HPIP" /inference="alignment:Splign:1.39.8" exon 703..726 /gene="PBXIP1" /gene_synonym="HPIP" /inference="alignment:Splign:1.39.8" exon 727..797 /gene="PBXIP1" /gene_synonym="HPIP" /inference="alignment:Splign:1.39.8" exon 798..929 /gene="PBXIP1" /gene_synonym="HPIP" /inference="alignment:Splign:1.39.8" exon 930..2161 /gene="PBXIP1" /gene_synonym="HPIP" /inference="alignment:Splign:1.39.8" variation 1941 /gene="PBXIP1" /gene_synonym="HPIP" /replace="g" /replace="t" /db_xref="dbSNP:11559159" variation 2096 /gene="PBXIP1" /gene_synonym="HPIP" /replace="c" /replace="t" /db_xref="dbSNP:3211037" exon 2162..3199 /gene="PBXIP1" /gene_synonym="HPIP" /inference="alignment:Splign:1.39.8" STS 2298..3000 /gene="PBXIP1" /gene_synonym="HPIP" /standard_name="PBXIP1_8075" /db_xref="UniSTS:467817" STS 2641..2799 /gene="PBXIP1" /gene_synonym="HPIP" /standard_name="RH15903" /db_xref="UniSTS:64483" variation 2751 /gene="PBXIP1" /gene_synonym="HPIP" /replace="c" /replace="t" /db_xref="dbSNP:200074029" STS 2982..3127 /gene="PBXIP1" /gene_synonym="HPIP" /standard_name="A002B11" /db_xref="UniSTS:5238" STS 3034..3143 /gene="PBXIP1" /gene_synonym="HPIP" /standard_name="Cda0tg01" /db_xref="UniSTS:44653" variation 3153 /gene="PBXIP1" /gene_synonym="HPIP" /replace="g" /replace="t" /db_xref="dbSNP:9236" ORIGIN
gaccgaagcaagagctggttcaggtggcagccacagcagcctcagggacctcagcaactatggcctcctgcccagactctgataatagctgggtgcttgctggctccgagagcctgccagtggagacactgggcccggcatccaggatggacccagaatctgagagagccctgcaggcccctcacagcccctccaagacagatgggaaagaattagctgggaccatggatggagaagggacgctcttccagactgaaagccctcagtctggcagcattctaacagaggagactgaggtcaagggcaccctggaaggtgatgtttgtggtgtggagcctcctggcccaggagacacagtagtccagggagacctgcaggagaccaccgtggtgacaggcctgggaccagacacacaggacctggaaggccagagccctccacagagcctgccttcaacccccaaagcagcttggatcagggaggagggccgctgctccagcagtgacgatgacaccgacgtggacatggagggtctgcggagacggcggggccgggaggccggcccacctcagcccatggtgcccctggctgtggagaaccaggctgggggtgagggtgcaggcggggagctgggcatctccctcaacatgtgcctccttggggccctggttctgcttggcctgggggtcctcctcttctcaggtggcctctcagagtctgagactgggcccatggaggaagtggagcggcaggtcctcccagaccccgaggtgctggaagctgtgggggacaggcaggatgggctaagggaacagctgcaggccccagtgcctcctgacagtgtccccagcctgcaaaacatgggtcttctgctggacaagctggccaaggagaaccaggacatccggctgctgcaggcccagctgcaggcccaaaaggaagagcttcagagcctgatgcaccagcccaaagggctagaggaggagaatgcccagctccggggggctctgcagcagggcgaagccttccagcgggctctggagtcagagctgcagcagctgcgggcccggctccaggggctggaggccgactgtgtccggggcccagatggggtgtgcctcagtgggggtagaggcccacagggtgacaaggccatcagggagcaaggccccagggagcaggagccagaactcagcttcctgaagcagaaggaacagctggaggctgaggcacaggcattaaggcaagagttagagaggcagcgacggctgctggggtctgtacagcaggatctggagaggagcttgcaggatgccagccgcggggacccagctcatgctggcttggctgagctgggccacagattggcccagaaactgcagggcctggagaactggggccaggaccctggggtctctgccaatgcctcaaaggcctggcaccagaagtcccacttccagaattctagggagtggagtggaaaggaaaagtggtgggatgggcagagagaccggaaggctgagcactggaaacataagaaggaagaatctggccgggaaaggaagaagaactggggaggtcaggaggacagggagccagcaggaaggtggaaggagggcaggccaagggtggaggagtcggggagcaagaaggagggcaagcgacagggcccgaaggaacccccaaggaaaagtggtagcttccactcctctggagaaaagcagaagcaacctcggtggagggaagggactaaggacagccatgaccccctgccatcctgggcagagctgttgaggcccaagtaccgggcaccccagggctgctcaggtgtggacgagtgtgcccggcaggagggcctgactttctttggcacagagctagccccagtgcggcaacaggagctggcctctctgctaagaacatacttggcacggctgccctgggctgggcagctgaccaaggagctacccctctcacctgctttctttggtgaggatggcatcttccgtcatgaccgcctccgcttccgggattttgtggatgccctggaggacagcttggaggaggtggctgtgcaacagacaggtgatgatgatgaagtagatgactttgaggacttcatcttcagccacttctttggagacaaagcactgaagaagaggtcagggaagaaggacaagcactcacagagcccaagagctgcggggcccagggaggggcacagccatagccaccaccaccaccaccggggctgacaccctgccccacagggaatggccttggcctggcccagcccaagatcccagcgttatctaactcctggagggtggactctgtcctggcttgtttggtgtcctcagatatctttcacacagtagagcaaaatcaccagccctgcactgatgtcactttatgtagaaaaaggccttagctggacctgcgttgccgtctatgcaaatgcatgcaaatactccaggccctgggatgtgggcttgtgttttgtcactgtgaagggggagatgggagaggagcctgttttggggtggggtctggggaaggcaatctgattctgaagctaaagagctttcatcctcttgagtgtatgtccccatagtgggccccttgacccacatgctgaccggtgccttgggatttgactagagttgctggctcgaggcccagcacgaggacttaccctggggttttgttaggtttggaagcagctgtccctagggggtgaagtcccccccctttttttttttacccctgcttctcccacggcttcacctccctatgtgaactgtagactcagatcccaataaagtgctgttgcagctatgatgctaggtggtttctaagcacaggggacaccccacaccccctgcctgaatggatgggtccatcccaggcactggtacttgcccccttgttctgtatccccctttgcccttgccttgcccttccaacaaaccctaggcccttgagaagctgatacttctccttttgctcacagctgccttggccccacccctgggagatgtagcaaattgagtgtgggttttggagtctgagcctcaggctcaaatccaggccaagtgatcttgggcaagttaatctctgggaactttgggtttcttatcctcaaaaaaggcgatggaagggctggggaagtgattaaataaaagcaacgcaagaaaaaaaaaaaaaaaaaaa
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:57326 -> Molecular function: GO:0003714 [transcription corepressor activity] evidence: NAS GeneID:57326 -> Molecular function: GO:0005515 [protein binding] evidence: IPI GeneID:57326 -> Biological process: GO:0007275 [multicellular organismal development] evidence: NAS GeneID:57326 -> Biological process: GO:0030154 [cell differentiation] evidence: NAS GeneID:57326 -> Biological process: GO:0045892 [negative regulation of transcription, DNA-dependent] evidence: NAS GeneID:57326 -> Cellular component: GO:0005634 [nucleus] evidence: NAS GeneID:57326 -> Cellular component: GO:0005737 [cytoplasm] evidence: IDA GeneID:57326 -> Cellular component: GO:0005829 [cytosol] evidence: NAS GeneID:57326 -> Cellular component: GO:0005874 [microtubule] evidence: IEA GeneID:57326 -> Cellular component: GO:0043231 [intracellular membrane-bounded organelle] evidence: IDA
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