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2024-03-28 22:22:48, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_019001              10092 bp    mRNA    linear   PRI 05-MAY-2013
DEFINITION  Homo sapiens 5'-3' exoribonuclease 1 (XRN1), transcript variant 1,
            mRNA.
ACCESSION   NM_019001
VERSION     NM_019001.3  GI:110624791
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 10092)
  AUTHORS   Li,Y., Masaki,T., Yamane,D., McGivern,D.R. and Lemon,S.M.
  TITLE     Competing and noncompeting activities of miR-122 and the 5'
            exonuclease Xrn1 in regulation of hepatitis C virus replication
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 110 (5), 1881-1886 (2013)
   PUBMED   23248316
  REMARK    GeneRIF: Data show that 5' exonuclease Xrn1 knockdown and miR-122
            supplementation have equal, redundant, and nonadditive effects on
            the rate of viral RNA decay, indicating that miR-122 protects HCV
            RNA from 5' decay.
REFERENCE   2  (bases 1 to 10092)
  AUTHORS   Braun,J.E., Truffault,V., Boland,A., Huntzinger,E., Chang,C.T.,
            Haas,G., Weichenrieder,O., Coles,M. and Izaurralde,E.
  TITLE     A direct interaction between DCP1 and XRN1 couples mRNA decapping
            to 5' exonucleolytic degradation
  JOURNAL   Nat. Struct. Mol. Biol. 19 (12), 1324-1331 (2012)
   PUBMED   23142987
  REMARK    GeneRIF: findings reveal a role for XRN1 in decapping and provide a
            molecular basis for the coupling of decapping to 5'-->3' mRNA
            degrada
REFERENCE   3  (bases 1 to 10092)
  AUTHORS   Mullen,T.E. and Marzluff,W.F.
  TITLE     Degradation of histone mRNA requires oligouridylation followed by
            decapping and simultaneous degradation of the mRNA both 5' to 3'
            and 3' to 5'
  JOURNAL   Genes Dev. 22 (1), 50-65 (2008)
   PUBMED   18172165
REFERENCE   4  (bases 1 to 10092)
  AUTHORS   van Dijk,E.L., Schilders,G. and Pruijn,G.J.
  TITLE     Human cell growth requires a functional cytoplasmic exosome, which
            is involved in various mRNA decay pathways
  JOURNAL   RNA 13 (7), 1027-1035 (2007)
   PUBMED   17545563
REFERENCE   5  (bases 1 to 10092)
  AUTHORS   Lehner,B. and Sanderson,C.M.
  TITLE     A protein interaction framework for human mRNA degradation
  JOURNAL   Genome Res. 14 (7), 1315-1323 (2004)
   PUBMED   15231747
REFERENCE   6  (bases 1 to 10092)
  AUTHORS   Ingelfinger,D., Arndt-Jovin,D.J., Luhrmann,R. and Achsel,T.
  TITLE     The human LSm1-7 proteins colocalize with the mRNA-degrading
            enzymes Dcp1/2 and Xrnl in distinct cytoplasmic foci
  JOURNAL   RNA 8 (12), 1489-1501 (2002)
   PUBMED   12515382
  REMARK    GeneRIF: LSm1-7 proteins colocalize with DCP1,DCP2 and Xrn1 in
            cytoplasmic foci
REFERENCE   7  (bases 1 to 10092)
  AUTHORS   Zhang,K., Dion,N., Fuchs,B., Damron,T., Gitelis,S., Irwin,R.,
            O'Connor,M., Schwartz,H., Scully,S.P., Rock,M.G., Bolander,M.E. and
            Sarkar,G.
  TITLE     The human homolog of yeast SEP1 is a novel candidate tumor
            suppressor gene in osteogenic sarcoma
  JOURNAL   Gene 298 (2), 121-127 (2002)
   PUBMED   12426100
REFERENCE   8  (bases 1 to 10092)
  AUTHORS   Harrington,J.J., Sherf,B., Rundlett,S., Jackson,P.D., Perry,R.,
            Cain,S., Leventhal,C., Thornton,M., Ramachandran,R.,
            Whittington,J., Lerner,L., Costanzo,D., McElligott,K., Boozer,S.,
            Mays,R., Smith,E., Veloso,N., Klika,A., Hess,J., Cothren,K., Lo,K.,
            Offenbacher,J., Danzig,J. and Ducar,M.
  TITLE     Creation of genome-wide protein expression libraries using random
            activation of gene expression
  JOURNAL   Nat. Biotechnol. 19 (5), 440-445 (2001)
   PUBMED   11329013
REFERENCE   9  (bases 1 to 10092)
  AUTHORS   Sato,Y., Shimamoto,A., Shobuike,T., Sugimoto,M., Ikeda,H.,
            Kuroda,S. and Furuichi,Y.
  TITLE     Cloning and characterization of human Sep1 (hSEP1) gene and
            cytoplasmic localization of its product
  JOURNAL   DNA Res. 5 (4), 241-246 (1998)
   PUBMED   9802570
REFERENCE   10 (bases 1 to 10092)
  AUTHORS   Bashkirov,V.I., Scherthan,H., Solinger,J.A., Buerstedde,J.M. and
            Heyer,W.D.
  TITLE     A mouse cytoplasmic exoribonuclease (mXRN1p) with preference for G4
            tetraplex substrates
  JOURNAL   J. Cell Biol. 136 (4), 761-773 (1997)
   PUBMED   9049243
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BX640905.1, AY137776.1, BG197321.1 and AC023508.16.
            On Jul 22, 2006 this sequence version replaced gi:40254886.
            
            Summary: SEP1 localizes to cytoplasmic foci containing a complex of
            mRNA-degrading enzymes. In addition to mRNA metabolism, yeast Sep1
            has been implicated in a variety of nuclear and cytoplasmic
            functions, including homologous recombination, meiosis, telomere
            maintenance, and microtubule assembly.[supplied by OMIM, Apr 2004].
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BX640905.1, AY137776.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           ERS025081, ERS025082 [ECO:0000350]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-67                BX640905.1         1-67
            68-5188             AY137776.1         1-5121
            5189-5269           BG197321.1         308-388
            5270-10092          AC023508.16        31718-36540         c
FEATURES             Location/Qualifiers
     source          1..10092
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="3"
                     /map="3q23"
     gene            1..10092
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /note="5'-3' exoribonuclease 1"
                     /db_xref="GeneID:54464"
                     /db_xref="HGNC:30654"
                     /db_xref="MIM:607994"
     exon            1..142
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     STS             32..160
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /standard_name="18494"
     misc_feature    41..43
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /note="upstream in-frame stop codon"
     CDS             68..5188
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /note="isoform a is encoded by transcript variant 1;
                     strand-exchange protein 1 homolog"
                     /codon_start=1
                     /product="5'-3' exoribonuclease 1 isoform a"
                     /protein_id="NP_061874.3"
                     /db_xref="GI:110624792"
                     /db_xref="CCDS:CCDS3123.1"
                     /db_xref="GeneID:54464"
                     /db_xref="HGNC:30654"
                     /db_xref="MIM:607994"
                     /translation="
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGETLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCAPEETTFHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKYLNEAAGVAAEEARNYKEKKKLKGQENSLCWTALDKNEGEMITSKDNLEDETEDDDLFETEFRQYKRTYYMTKMGVDVVSDDFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLSDIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSPIIEYYPPDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLMCWYDRDTEFIYPSPWPEKFPAIERCCTRYKIISLDAWRVDINKNKITRIDQKALYFCGFPTLKHIRHKFFLKKSGVQVFQQSSRGENMMLEILVDAESDELTVENVASSVLGKSVFVNWPHLEEARVVAVSDGETKFYLEEPPGTQKLYSGRTAPPSKVVHLGDKEQSNWAKEVQGISEHYLRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQVVPFVYQTIVKDIRAFDSRFSNIKTLDDLFPLRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVIFSIPCEPNLDALIQNQHKYSIKYNPGYVLASRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNKKNEEVPGYTKKVGSEWMYSSAAEQLLAEYLERAPELFSYIAKNSQEDVFYEDDIWPGENENGAEKVQEIITWLKGHPVSTLSRSSCDLQILDAAIVEKIEEEVEKCKQRKNNKKVRVTVKPHLLYRPLEQQHGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTIIGIKGANREADVLFEVLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRSETGNQKLTAIVKPQPAVHQHSSSSSVSSGHLGALNHSPQSLFVPTQVPTKDDDEFCNIWQSLQGSGKMQYFQPTIQEKGAVLPQEISQVNQHHKSGFNDNSVKYQQRKHDPHRKFKEECKSPKAECWSQKMSNKQPNSGIENFLASLNISKENEVQSSHHGEPPSEEHLSPQSFAMGTRMLKEILKIDGSNTVDHKNEIKQIANEIPVSSNRRDEYGLPSQPKQNKKLASYMNKPHSANEYHNVQSMDNMCWPAPSQIPPVSTPVTELSRICSLVGMPQPDFSFLRMPQTMTVCQVKLSNGLLVHGPQCHSENEAKEKAALFALQQLGSLGMNFPLPSQVFANYPSAVPPGTIPPAFPPPTGWDHYGSNYALGAANIMPSSSHLFGSMPWGPSVPVPGKPFHHTLYSGTMPMAGGIPGGVHNQFIPLQVTKKRVANKKNFENKEAQSSQATPVQTSQPDSSNIVKVSPRESSSASLKSSPIAQPASSFQVETASQGHSISHHKSTPISSSRRKSRKLAVNFGVSKPSE
"
     misc_feature    68..751
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /note="XRN 5'-3' exonuclease N-terminus; Region: XRN_N;
                     pfam03159"
                     /db_xref="CDD:202558"
     exon            143..375
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            376..473
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     STS             440..567
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /standard_name="16STS01"
                     /db_xref="UniSTS:505254"
     exon            474..583
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            584..694
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            695..777
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            778..865
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            866..1034
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     variation       962
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:35351308"
     exon            1035..1102
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            1103..1240
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            1241..1307
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            1308..1413
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            1414..1503
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            1504..1660
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            1661..1780
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            1781..1950
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            1951..2071
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            2072..2170
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     variation       2087
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:35214510"
     exon            2171..2274
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            2275..2406
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            2407..2569
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            2570..2683
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            2684..2782
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            2783..2898
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            2899..3045
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            3046..3135
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            3136..3271
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            3272..3328
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            3329..3461
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            3462..3531
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            3532..3739
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            3740..3835
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     STS             3746..3845
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /standard_name="72487"
     STS             3750..3933
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /standard_name="47073"
     exon            3836..3944
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     variation       3843
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:35902661"
     exon            3945..4006
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            4007..4129
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            4130..4286
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            4287..4468
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            4469..4582
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            4583..4685
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            4686..4724
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     STS             4687..4767
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /standard_name="6621"
     exon            4725..4885
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     exon            4886..10092
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /inference="alignment:Splign:1.39.8"
     STS             5326..5406
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /standard_name="STS-T66948"
                     /db_xref="UniSTS:6621"
     STS             6160..6343
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /standard_name="RH46274"
                     /db_xref="UniSTS:47073"
     STS             6248..6347
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /standard_name="SHGC-56571"
                     /db_xref="UniSTS:72487"
     variation       8633..8636
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /replace=""
                     /replace="agtt"
                     /db_xref="dbSNP:67083822"
     STS             9821..9992
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /standard_name="AB048929"
                     /db_xref="UniSTS:479818"
     STS             9933..10061
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /standard_name="WI-13749"
                     /db_xref="UniSTS:18494"
     variation       10017
                     /gene="XRN1"
                     /gene_synonym="SEP1"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:3191463"
ORIGIN      
cggcggagccccggcggggcgtttggtttcggtttggccctgactgggattagtgttgacgatcgaaatgggagtccccaagttttacagatggatctcagagcggtatccctgtctcagcgaagtggtgaaagagcatcagattcctgaatttgacaacttgtacctggatatgaatggaattatacatcagtgctcccatcctaatgatgatgatgttcactttagaatttcagatgataaaatctttactgatatttttcactacctggaggtgttgtttcgcattattaaacccaggaaagtgttctttatggctgtagatggtgtggctcctcgagcaaaaatgaaccagcagcgtgggaggcgttttaggtcagcaaaggaggcagaagacaaaattaaaaaggcaatagagaagggagaaactcttcctacagaggccagatttgattccaactgtatcacaccaggaactgaatttatggccaggttacatgaacatctgaagtattttgtaaatatgaaaatttccacagacaagtcatggcaaggagttaccatctacttctcaggccatgagactcctggagaaggagagcataaaatcatggaatttatcagatccgagaaagcaaagccagatcatgatccaaacaccagacactgtctttatggtttagatgctgacttgattatgcttggattaacaagtcatgaggcacatttttctctcttaagagaagaagttcgatttggtggcaaaaaaacacaacgggtatgtgctccagaagaaactacatttcaccttctacacttgtctttaatgagagagtatattgactatgagttttcagtattaaaagaaaagatcacatttaaatatgatattgaaaggataatagatgattggattttgatggggtttcttgttggtaatgattttatccctcatctacctcatttacatattaatcatgatgcactgcctcttctttatggaacatatgttaccatcctgccagaacttgggggttatattaatgaaagtgggcacctcaacttacctcgatttgagaaataccttgtgaaactatcagattttgatcgggagcacttcagtgaagtttttgtggacctaaaatggtttgaaagcaaagttggtaacaagtacctcaatgaagcagcaggtgtcgcagcagaagaagccaggaactacaaggaaaagaaaaagttaaagggccaggaaaattctctgtgttggactgctttagacaaaaatgaaggcgaaatgataacttctaaggataatttagaagatgagactgaagatgatgacctatttgaaactgagtttagacaatataaaagaacatattacatgacgaagatgggggttgacgtagtatctgatgactttctggctgatcaagctgcatgttatgttcaggcaatacagtggattttgcactattactatcatggagttcagtcctggagctggtattatccttatcattatgcacctttcctgtctgatatacacaacatcagtacactcaaaatccattttgaactaggaaaaccttttaagccatttgaacagcttcttgctgtacttccagcagccagcaaaaatttacttcctgcatgctaccagcatttgatgaccaatgaagactcaccaattatagaatattacccacctgattttaaaactgacctaaatgggaaacaacaggaatgggaagctgtggtgttaatcccttttattgatgagaagcgattattggaagccatggagacatgtaaccactccctcaaaaaggaagagaggaaaagaaaccaacatagtgagtgcctaatgtgctggtatgatagagacacagagtttatctatccttctccatggccagaaaagttccctgccatagaacgatgttgtacaaggtataaaataatatccttagatgcttggcgtgtagacataaacaaaaacaaaataaccagaattgaccagaaagcattatatttctgtggatttcctactctgaaacacatcagacacaaattttttttgaagaaaagtggtgttcaagtattccagcaaagcagtcgtggagaaaacatgatgttggaaatcttagtggatgcagaatcagatgaacttaccgtagaaaatgtagcttcatcagtgcttggaaaatctgtctttgttaattggcctcaccttgaggaagctagagtcgtggctgtatcagatggagaaactaagttttacttggaagaacctccaggaacacagaagctttattcaggaagaactgccccaccatctaaagtggttcatcttggagataaagaacaatctaactgggcaaaagaagtacaaggaatttcagaacactacctgagaagaaaaggaataataataaatgaaacatctgcagttgtgtatgctcagttactcacaggtcgtaaatatcaaataaatcaaaatggtgaagttcgtctagagaaacagtggtcaaaacaagttgttccttttgtttatcaaactattgtcaaggacatccgagctttcgactcccgtttctccaatatcaaaacattggatgatttgtttcctctgagaagtatggtctttatgctgggaactccctattatggctgcactggagaagttcaggattcaggtgatgtgattacagaaggtaggattcgtgtgattttcagcattccatgtgaacccaatcttgatgctttaatacagaaccagcataaatattctataaagtacaacccaggatatgtgttggccagtcgccttggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagaggatctaggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaattcaacaagaaaaatgaggaggtacctggatatactaagaaagttggaagtgaatggatgtattcatctgcagcagaacaacttctggcagagtacttagagagagctccagaactatttagttatatagccaaaaatagccaagaggatgtgttctatgaagatgacatttggcctggagaaaatgagaatggtgctgaaaaagttcaagaaattattacttggctaaaaggacatcctgtcagtactttatctcgttcttcttgtgatttacaaattctggatgcagctattgttgagaaaattgaggaagaagtcgaaaagtgcaagcaaagaaagaataataagaaggtgcgagtaacagtgaaaccccatttgctatacagacctttagaacagcaacatggagtcattcctgatcgggatgcagaattttgtctttttgaccgtgttgtaaatgtgagagaaaacttctcagttccagttggccttcgaggcaccatcataggaataaaaggagctaatagagaagccgatgtactatttgaagtattatttgatgaagaatttcctggagggttaacaataagatgctcacctggtagaggttatcgactgccaacaagtgccttggtgaacctttctcatgggagtcgctctgaaactggaaatcagaagttgacagccatcgtaaaaccacaaccagctgtacatcaacatagctcaagttcatcagtttcctctgggcatttgggagccctcaaccattcccctcaatcactttttgttcctactcaagtacctactaaagatgatgatgaattctgcaacatttggcagtccttacagggatctggaaagatgcaatactttcagccaactatacaagagaagggtgcagttctacctcaagaaataagccaagtaaatcaacatcataaatctggctttaatgacaacagtgttaaatatcagcaaagaaaacatgaccctcacagaaaatttaaagaagagtgtaagagtcctaaagctgagtgttggtcccaaaaaatgtccaataagcagcctaactctggaattgagaactttttagcatctttgaatatctccaaagaaaatgaagtacagtcatctcatcatggggagcctccaagtgaagagcatttgtcaccacagtcatttgccatgggaacacggatgcttaaagaaattctaaaaattgatggctctaacactgtggaccataagaatgaaatcaaacagattgctaatgaaatccctgtttcctctaacagaagagatgaatatggattaccctctcagcctaaacaaaataagaaattagcatcttatatgaacaagcctcacagtgctaatgagtaccataatgttcagtctatggacaatatgtgttggcctgcccccagccagatccctcctgtatccacaccagtaactgaactttctcgaatttgttcccttgttggaatgccacaacctgatttctcctttcttaggatgccacagacaatgaccgtttgccaagtaaaattatctaatggcttactggtacatgggccacagtgccactctgaaaatgaagccaaagagaaagctgcactttttgctttacaacagttgggctccttaggcatgaatttccctttgccttcacaagtatttgcaaattatccttcagctgtaccacctggaaccattcctccagcctttcccccacctactggctgggatcactatggaagcaactatgcattgggggcagctaatataatgccttcgtcgtctcatctctttggctcaatgccatggggaccatcggtgccagttcctgggaagcccttccatcatactttatattctgggaccatgcccatggctgggggaataccagggggtgtgcacaatcagtttatacctctgcaggttactaaaaaaagggttgcaaacaaaaagaactttgagaataaggaagcccagagttctcaagccactccagttcagactagccagccagattcttccaacattgtcaaagtaagtccacgggagagctcatcagcttctttgaagtcctctccgattgctcaacctgcatcttcttttcaagttgaaactgcctctcaaggccatagtatatctcaccataagtcaacaccaatctcttcttcaagaagaaaatcaagaaaactggctgttaattttggtgtttctaaaccttctgagtaaatttggctcttagaattaagttaatttcttctctttccatctacctttttataaatacatatctatgtctcataaaaattagaatgtactattttaaaataatatgtgtaaattgaaatttttttcatttttaagttatcaggcacttttcatgctgtttaaaagactgtgtatcaaattgtgcactttaagtatgtgcagtttgttgtatgtcaattatacctcaataaatctgtaataaaaaactaaattaaaccttgcattaaaataatatcacagtatcagtggactaaacattaaaatgtaccactctaatcattggcctcatgattgaagcatcctgaactatgaattagacatcagttagcaataataagcattttttacactatcattgaggaataattacatggagcatgaaatttgggcctccagtataacttactgaatgtggattttatttctctttttaatgatgtaagaaaattgtcaggagaatggctcttatttatgtgtgttttaacttatgctttgttgcctctgagggtctttagacctgctgtgaaaggatcacatttgttgtggtgctgccagttttgctttattctaaattttgtaccaaagcaactttagaataatcagaatatttcatctaactgcttagaactataaatagcattctaaatttgagtaaatacaattttttaggttactcaagaaccagcattagtaatttctagtaaaattgtttcaaaatctacagggtacaatgattacaaattaatcttctaacaaaataaaatatgaaatattagtcatgttaattaataaactgtattattttgtatagctttttatttgcttacctgacattttatgagagcttcatagttggtcggtatgtagtgcttcttgggactgaagaaattctaattgttgtttaagttccaaggtgtgctacaatataggaggcacagtcatcagtttgtgacatacattatttactgcctatttcattctgattctatatttttagctttatgctgaactgttcaatgatgctgggattctctctttgcatgtcatatgtgaatgtgtggttcaagctgtaactgttgaaattattttagaatttatgacgatttctcagcagggcctatgtttatatatatatatatatttattctttagtttttgtgatatgcttatatttttaaggaagtaagttatagcatacttttttaaaagtaggaaccacaatctttatatggagcagcttgttatatctgattttcatgtaactcattggaaactctgccatgactcttaaagtagtcttacttgttttttaaaatgctggtattaaactaaatggactcctttcactaactgctgatttcagagtttaaatgttagcaggatatttgtgtattagcagtgccttcagtataagagagaaatattcattatctgtcatttatcatagtcgtataagtttccatgattttattttctgttattttcataagttcagatgtttatcagttcccaacattgtttctttatctgtagtgggatcttgagtaatgaggctcaagtaaatcctcaatgtgtataattattgcctcataaactctctctttgtttttaaaggaaacatctattatggtaatacaaagaaaagttaaattgtgacagtaatgttatattaacctcttcctactttaaagtgtgaaatgtttcacctcagctgtacaaactccagcattgagaatttgcctcactcattactcctgtgtgacagttatataaatagcatgcagctcacatctgttttagagcatagaagaagcggcacctgccatcttctgaaaactccaaagggaaatttcagtagacatagtgcactaaacccataaggatacttgaccaatatttgagcacagcaagctgacagttctatacagataggcagtgaaagagttttattttccagccaggcgcagtggctcaaatcccagcacttcgggaggctaaggcaggcggatcacttgaggtccggagttccagacaagcctggccaacatgatgaagccctgtctctactaaaaatacaaaaattagccgggcgtgatggcacatgcctttagtcccagctactcgggaggctgaggcatgagaatcatttgaacccgcgaggcagagtctgcagtgagccgagattgcaccactgcactccagcctggagagcagagcaagactctgtctcaaaaaaaagaaaaaagttttattatccttactttttttttaacattattattctaaaggtcaaaactgagaagagattaagataggagagagctccataatggctggatagtggtcaggcattctctattcttttccccctgtagacccattctaaatgtgggcctgaggtcaatgggagatgtgccctccctatggaggatgtaagaagcagaggccatttctgccccatgttgaggaaacaatctgttgatagacctggaatttagagtatatctgaaaagcagttggacttcaagaaatttaaaattctctctttgagatggggtggactaagaccacccccaaagtttaaaaatatgctcattcaacttgaatcttctgaggactttttgtgaaaatggtggactgtttagggcataggacagattccccaaattgctttatgcttccacataactagagcacttcaatctatttaagcctttgtctcctaactgaaacattatttctaaatatttctattcaataagttttttcttttttgagcaacttaagtgaattttgaagattgctccttccagtctcgttccttttcacattttcctgcattacctaataattacctcagcgttagaatttgaatgtattaattgatttaaacatcatgtagactaaagtcttaaacatctaagactcagttgtagttgcagaaaaaaattaaagtcacctctactgaaccttggtttcaatttaagatttttcttgcttttcaaaggggtaactaataaagattgaagggtttttttcccgattggtggaggaatgaagaactattgatgcaagtttttttattgtttctttctatgatcaggtacctgctttcattttagactgctacttccaaactaagctagattcttggttttaatgagaggaggcagagagagggaggcagatggaagaagaaaaacagttaaataagacatacccagtcactgcatttttggactataccgtatctttctagcacaaggaaatagataaactgtaaggtcttttttactcactttttatttatgtgttctatttgtgttagtcataactgtttatagtggttgtctaatttttacttttattatatgagatagagctgtgcagatcttcactcaagttagttctgtcacgcttcttcccattatttagagcacagttttttaaagcaactgtacaatttctcagccttatgagcttgctgtatttcttggtatcatgttgcttccaaattttgtttttactgtagaagacaattaatttattgtagagaagtggctgtgaaagtcgttctctgtctttaaaaatcaattgcagaagttcatttgtcatttttctagagataaattatagtactcaaactggcagtgctcagtatatacattttgtaagctttgtcagtgaaaccatcagttttgcaggagcttcctttcctagtcaagataaagcttaaaattccagaaattaatgtcgttcggactgactttattcatatttccatcaaacttctccaatacagtaagagatagtgttgaaccagcatcaagtctccagaaacatggcagagcagacaggccgttaagtttcacagacatcatagatccttttcttaaagaagaaaaacatgtataaaatagttttagtagtccaaaatgtcaactatctgtagctgcttttgtgtgtgtgtcagtgaacaaataataatgccttgctcaatcaatgcattcagccatctcaagtgcaatttgtgaaggagactatggtttccaaaagatacatttttttacaaagttaaacctgtaaaaagtctttttttttttccctccagccgtacaccaactgcacttggttgtttcagcagttggtatactattaaattgtccaggccaaataggtttctgtagctgttttagtaatttgaagccaaattctcatgctgtttctcattaaaaagaatgagaatttggtccatagttagctttaagttctctcttcctttctttcccttacagttaagggtttggtgggggatggggaggttgttttcgttttttggatttttttgtcttttggctttaagtatcatattttcttttgcctgtatccaactgcttctttgagtattttcatctagtttaatgtgagtaatagatgctgtgctgtcattgaagtgttcaacattttgttcatttaaacaaaagtgtaattcatacatatatagatacatatcttaattgatttctcaactattttataagtaactggaatttttcattagatcttatacagagaagtattttattaaaaattcaaaagggaagacttttatgtgctcattttgtaatttttgattttaaatatctttacattgtctgccaattaaagtgttttaaacttgcattggaatggactccgaatgtatttttgtggtgttacgttatccgtagatttctagcatgaagttagcctcacgatgctgtgcaaaggattttaaaatatgagagtcactgaaagagtttaaacatctgttcatgttaaatgctctatggattttaattaaagacttgagaatgattttataa
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:54464 -> Molecular function: GO:0003677 [DNA binding] evidence: IEA
            GeneID:54464 -> Molecular function: GO:0003723 [RNA binding] evidence: IEA
            GeneID:54464 -> Molecular function: GO:0005515 [protein binding] evidence: IPI
            GeneID:54464 -> Molecular function: GO:0008409 [5'-3' exonuclease activity] evidence: IEA
            GeneID:54464 -> Biological process: GO:0000288 [nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay] evidence: TAS
            GeneID:54464 -> Biological process: GO:0000956 [nuclear-transcribed mRNA catabolic process] evidence: IMP
            GeneID:54464 -> Biological process: GO:0010467 [gene expression] evidence: TAS
            GeneID:54464 -> Biological process: GO:0016070 [RNA metabolic process] evidence: TAS
            GeneID:54464 -> Biological process: GO:0016071 [mRNA metabolic process] evidence: TAS
            GeneID:54464 -> Biological process: GO:0016075 [rRNA catabolic process] evidence: IMP
            GeneID:54464 -> Biological process: GO:0043928 [exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay] evidence: TAS
            GeneID:54464 -> Biological process: GO:0071028 [nuclear mRNA surveillance] evidence: IMP
            GeneID:54464 -> Biological process: GO:0071044 [histone mRNA catabolic process] evidence: IMP
            GeneID:54464 -> Cellular component: GO:0000932 [cytoplasmic mRNA processing body] evidence: IEA
            GeneID:54464 -> Cellular component: GO:0005737 [cytoplasm] evidence: IDA
            GeneID:54464 -> Cellular component: GO:0005794 [Golgi apparatus] evidence: IDA
            GeneID:54464 -> Cellular component: GO:0005829 [cytosol] evidence: TAS
            GeneID:54464 -> Cellular component: GO:0005886 [plasma membrane] evidence: IDA
            GeneID:54464 -> Cellular component: GO:0045111 [intermediate filament cytoskeleton] evidence: IDA

by @meso_cacase at DBCLS
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