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2024-04-23 19:12:14, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_018955                971 bp    mRNA    linear   PRI 17-APR-2013
DEFINITION  Homo sapiens ubiquitin B (UBB), mRNA.
ACCESSION   NM_018955
VERSION     NM_018955.2  GI:22538474
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Chadwick,L., Gentle,L., Strachan,J. and Layfield,R.
  TITLE     Review: unchained maladie - a reassessment of the role of Ubb(+1)
            -capped polyubiquitin chains in Alzheimer's disease
  JOURNAL   Neuropathol. Appl. Neurobiol. 38 (2), 118-131 (2012)
   PUBMED   22082077
  REMARK    GeneRIF: age-dependent accumulation of Ubb(+1) , and how Ubb(+1)
            -mediated proteasome inhibition may contribute to Alzheimer's
            disease. [review]
            Review article
REFERENCE   2  (bases 1 to 971)
  AUTHORS   Haas,A.L. and Leach,C.A.
  TITLE     A baker's dozen of ubiquitin
  JOURNAL   Cell Biochem. Biophys. 60 (1-2), 1 (2011)
   PUBMED   21544573
  REMARK    GeneRIF: Studies indicate that biomedical research on ubiquitin
            moves into translational research and drug discovery.
REFERENCE   3  (bases 1 to 971)
  AUTHORS   Kessler,B.M. and Edelmann,M.J.
  TITLE     PTMs in conversation: activity and function of deubiquitinating
            enzymes regulated via post-translational modifications
  JOURNAL   Cell Biochem. Biophys. 60 (1-2), 21-38 (2011)
   PUBMED   21480003
  REMARK    GeneRIF: Studies indicate that DUBs recycle ubiquitin by processing
            polyubiquitin chains to generate free ubiquitin, and can be
            regulated by ubiquitination or phosphorylation.
            Review article
REFERENCE   4  (bases 1 to 971)
  AUTHORS   Dalrymple,M.B., Jaeger,W.C., Eidne,K.A. and Pfleger,K.D.
  TITLE     Temporal profiling of orexin receptor-arrestin-ubiquitin complexes
            reveals differences between receptor subtypes
  JOURNAL   J. Biol. Chem. 286 (19), 16726-16733 (2011)
   PUBMED   21378163
  REMARK    GeneRIF: analysis of orexin receptor 1 and 2 -arrestin-ubiquitin
            complexes
REFERENCE   5  (bases 1 to 971)
  AUTHORS   van Tijn,P., Hobo,B., Verhage,M.C., Oitzl,M.S., van Leeuwen,F.W.
            and Fischer,D.F.
  TITLE     Alzheimer-associated mutant ubiquitin impairs spatial reference
            memory
  JOURNAL   Physiol. Behav. 102 (2), 193-200 (2011)
   PUBMED   21059367
  REMARK    GeneRIF: The results of this study demonstrated that the UBB
            mutation caused the subtle defect in spatial reference memory
            formation, caused by a decrease in forebrain proteasome activity.
REFERENCE   6  (bases 1 to 971)
  AUTHORS   Adams,S.M., Sharp,M.G., Walker,R.A., Brammar,W.J. and Varley,J.M.
  TITLE     Differential expression of translation-associated genes in benign
            and malignant human breast tumours
  JOURNAL   Br. J. Cancer 65 (1), 65-71 (1992)
   PUBMED   1370760
REFERENCE   7  (bases 1 to 971)
  AUTHORS   Pancre,V., Pierce,R.J., Fournier,F., Mehtali,M., Delanoye,A.,
            Capron,A. and Auriault,C.
  TITLE     Effect of ubiquitin on platelet functions: possible identity with
            platelet activity suppressive lymphokine (PASL)
  JOURNAL   Eur. J. Immunol. 21 (11), 2735-2741 (1991)
   PUBMED   1657614
REFERENCE   8  (bases 1 to 971)
  AUTHORS   Baker,R.T. and Board,P.G.
  TITLE     The human ubiquitin-52 amino acid fusion protein gene shares
            several structural features with mammalian ribosomal protein genes
  JOURNAL   Nucleic Acids Res. 19 (5), 1035-1040 (1991)
   PUBMED   1850507
REFERENCE   9  (bases 1 to 971)
  AUTHORS   Webb,G.C., Baker,R.T., Fagan,K. and Board,P.G.
  TITLE     Localization of the human UbB polyubiquitin gene to chromosome band
            17p11.1-17p12
  JOURNAL   Am. J. Hum. Genet. 46 (2), 308-315 (1990)
   PUBMED   2154095
REFERENCE   10 (bases 1 to 971)
  AUTHORS   Schlesinger,D.H. and Goldstein,G.
  TITLE     Hybrid troponin reconstituted from vertebrate and arthropod
            subunits
  JOURNAL   Nature 255 (5507), 423-424 (1975)
   PUBMED   124018
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from X04803.2 and BC000379.2.
            This sequence is a reference standard in the RefSeqGene project.
            On Aug 29, 2002 this sequence version replaced gi:11024713.
            
            Summary: This gene encodes ubiquitin, one of the most conserved
            proteins known. Ubiquitin is required for ATP-dependent,
            nonlysosomal intracellular protein degradation of abnormal proteins
            and normal proteins with a rapid turnover. Ubiquitin is covalently
            bound to proteins to be degraded, and presumably labels these
            proteins for degradation. Ubiquitin also binds to histone H2A in
            actively transcribed regions but does not cause histone H2A
            degradation, suggesting that ubiquitin is also involved in
            regulation of gene expression. This gene consists of three direct
            repeats of the ubiquitin coding sequence with no spacer sequence.
            Consequently, the protein is expressed as a polyubiquitin precursor
            with a final amino acid after the last repeat. Aberrant form of
            this protein has been noticed in patients with Alzheimer's and Down
            syndrome. [provided by RefSeq, Jul 2008].
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC000379.2, BM927587.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           ERS025081, ERS025082 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="17"
                     /map="17p12-p11.2"
     gene            1..971
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="ubiquitin B"
                     /db_xref="GeneID:7314"
                     /db_xref="HGNC:12463"
                     /db_xref="HPRD:06771"
                     /db_xref="MIM:191339"
     exon            1..132
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    1
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="5'-most transcription initiation site has not been
                     determined"
     variation       30
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:144918437"
     variation       33
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368947993"
     misc_feature    45
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="transcription initiation site"
     variation       55
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:3744326"
     variation       107
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:75327805"
     variation       116
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:7208009"
     misc_feature    127..129
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="upstream in-frame stop codon"
     exon            133..971
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /inference="alignment:Splign:1.39.8"
     CDS             139..828
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="polyubiquitin B; Polyubiquitin-B"
                     /codon_start=1
                     /product="polyubiquitin-B precursor"
                     /protein_id="NP_061828.1"
                     /db_xref="GI:11024714"
                     /db_xref="CCDS:CCDS11177.1"
                     /db_xref="GeneID:7314"
                     /db_xref="HGNC:12463"
                     /db_xref="HPRD:06771"
                     /db_xref="MIM:191339"
                     /translation="
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
"
     misc_feature    139..366
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubiquitin; Region: Ubiquitin; cd01803"
                     /db_xref="CDD:176398"
     mat_peptide     139..366
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /product="polyubiquitin-B"
     misc_feature    139..354
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubiquitin homologues; Region: UBQ; smart00213"
                     /db_xref="CDD:214563"
     misc_feature    order(154..168,256..258,262..264,268..270,277..285,
                     340..342,346..366)
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubq - E2 interaction site; other site"
                     /db_xref="CDD:176398"
     misc_feature    order(154..156,160..168,253..255,259..264,334..336,
                     340..342,346..366)
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubq - UCH interaction site; other site"
                     /db_xref="CDD:176398"
     misc_feature    order(154..156,160..162,268..270,274..285,340..342,
                     346..348,352..354,364..366)
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubq - CUE interaction site; other site"
                     /db_xref="CDD:176398"
     misc_feature    340..342
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Essential for function; propagated from
                     UniProtKB/Swiss-Prot (P0CG47.1); other site"
     misc_feature    367..594
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubiquitin; Region: Ubiquitin; cd01803"
                     /db_xref="CDD:176398"
     mat_peptide     367..594
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /product="polyubiquitin-B"
     misc_feature    367..582
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubiquitin homologues; Region: UBQ; smart00213"
                     /db_xref="CDD:214563"
     misc_feature    order(382..396,484..486,490..492,496..498,505..513,
                     568..570,574..594)
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubq - E2 interaction site; other site"
                     /db_xref="CDD:176398"
     misc_feature    order(382..384,388..396,481..483,487..492,562..564,
                     568..570,574..594)
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubq - UCH interaction site; other site"
                     /db_xref="CDD:176398"
     misc_feature    order(382..384,388..390,496..498,502..513,568..570,
                     574..576,580..582,592..594)
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubq - CUE interaction site; other site"
                     /db_xref="CDD:176398"
     misc_feature    595..822
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubiquitin; Region: Ubiquitin; cd01803"
                     /db_xref="CDD:176398"
     mat_peptide     595..822
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /product="polyubiquitin-B"
     misc_feature    595..810
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubiquitin homologues; Region: UBQ; smart00213"
                     /db_xref="CDD:214563"
     misc_feature    order(610..624,712..714,718..720,724..726,733..741,
                     796..798,802..822)
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubq - E2 interaction site; other site"
                     /db_xref="CDD:176398"
     misc_feature    order(610..612,616..624,709..711,715..720,790..792,
                     796..798,802..822)
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubq - UCH interaction site; other site"
                     /db_xref="CDD:176398"
     misc_feature    order(610..612,616..618,724..726,730..741,796..798,
                     802..804,808..810,820..822)
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /note="Ubq - CUE interaction site; other site"
                     /db_xref="CDD:176398"
     variation       160
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:11550545"
     variation       183
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:17026960"
     variation       195
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:151174232"
     STS             202..602
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="39082591"
                     /db_xref="UniSTS:498050"
     STS             202..374
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="39082591"
                     /db_xref="UniSTS:498050"
     variation       225..226
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace=""
                     /replace="t"
                     /db_xref="dbSNP:34227126"
     variation       246
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:16962978"
     variation       249
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:16962981"
     STS             255..813
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="D2S1561E"
                     /db_xref="UniSTS:150646"
     STS             255..585
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="D2S1561E"
                     /db_xref="UniSTS:150646"
     STS             255..357
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="D2S1561E"
                     /db_xref="UniSTS:150646"
     variation       267
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:373239807"
     variation       281
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:139133663"
     variation       286
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:149735634"
     variation       288
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:143121650"
     variation       294
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:17849300"
     variation       297
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:145568298"
     variation       298
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:147392000"
     variation       303
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:148876590"
     variation       321
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:9908960"
     variation       333
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:146449749"
     variation       345
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377358152"
     STS             372..647
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="AA555564"
                     /db_xref="UniSTS:206909"
     variation       393
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:370706400"
     variation       408
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:16962973"
     STS             430..602
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="39082591"
                     /db_xref="UniSTS:498050"
     variation       447
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377487692"
     variation       459
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:17052364"
     variation       461
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:3202129"
     variation       465
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:1060199"
     STS             483..813
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="D2S1561E"
                     /db_xref="UniSTS:150646"
     STS             483..585
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="D2S1561E"
                     /db_xref="UniSTS:150646"
     variation       528
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:1060079"
     variation       564
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:148184773"
     variation       579
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:370468040"
     STS             600..647
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="AA555564"
                     /db_xref="UniSTS:206909"
     variation       621
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:141581067"
     STS             630..770
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="RH1659"
                     /db_xref="UniSTS:62659"
     STS             711..813
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /standard_name="D2S1561E"
                     /db_xref="UniSTS:150646"
     variation       714
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:138298095"
     variation       717
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376813261"
     variation       723
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:149612063"
     variation       731
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:11550548"
     variation       753
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201208945"
     variation       772
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:1065103"
     variation       777
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:147281408"
     variation       783
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201547246"
     variation       828..829
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace=""
                     /replace="t"
                     /db_xref="dbSNP:368225113"
     variation       839
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374182250"
     variation       844
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:116070441"
     variation       847
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:7218030"
     variation       852
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374935774"
     variation       872
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:1061290"
     variation       876
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:369275749"
     variation       903
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:14261"
     variation       917
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:14660"
     polyA_signal    949..954
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
     variation       969
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:185174661"
     variation       970
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /replace="a"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:113339371"
     polyA_site      971
                     /gene="UBB"
                     /gene_synonym="RPS27A; UBA52; UBC"
                     /experiment="experimental evidence, no additional details
                     recorded"
ORIGIN      
cactcgttgcataaatttgcgctccgccagcccggagcatttaggggcggttggctttgttgggtgagcttgtttgtgtccctgtgggtggacgtggttggtgattggcaggatcctggtatccgctaacaggtcaaaatgcagatcttcgtgaaaacccttaccggcaagaccatcacccttgaggtggagcccagtgacaccatcgaaaatgtgaaggccaagatccaggataaggaaggcattccccccgaccagcagaggctcatctttgcaggcaagcagctggaagatggccgtactctttctgactacaacatccagaaggagtcgaccctgcacctggtcctgcgtctgagaggtggtatgcagatcttcgtgaagaccctgaccggcaagaccatcaccctggaagtggagcccagtgacaccatcgaaaatgtgaaggccaagatccaggataaagaaggcatccctcccgaccagcagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgactacaacatccagaaggagtcgaccctgcacctggtcctgcgtctgagaggtggtatgcagatcttcgtgaagaccctgaccggcaagaccatcactctggaggtggagcccagtgacaccatcgaaaatgtgaaggccaagatccaagataaagaaggcatcccccccgaccagcagaggctcatctttgcaggcaagcagctggaagatggccgcactctttctgactacaacatccagaaagagtcgaccctgcacctggtcctgcgcctgaggggtggctgttaattcttcagtcatggcattcgcagtgcccagtgatggcattactctgcactatagccatttgccccaacttaagtttagaaattacaagtttcagtaatagctgaacctgttcaaaatgttaataaaggtttcgttgcatggta
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:7314 -> Molecular function: GO:0005515 [protein binding] evidence: IPI
            GeneID:7314 -> Biological process: GO:0000082 [G1/S transition of mitotic cell cycle] evidence: TAS
            GeneID:7314 -> Biological process: GO:0000122 [negative regulation of transcription from RNA polymerase II promoter] evidence: TAS
            GeneID:7314 -> Biological process: GO:0000187 [activation of MAPK activity] evidence: TAS
            GeneID:7314 -> Biological process: GO:0000209 [protein polyubiquitination] evidence: TAS
            GeneID:7314 -> Biological process: GO:0000278 [mitotic cell cycle] evidence: TAS
            GeneID:7314 -> Biological process: GO:0002224 [toll-like receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0002474 [antigen processing and presentation of peptide antigen via MHC class I] evidence: TAS
            GeneID:7314 -> Biological process: GO:0002479 [antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent] evidence: TAS
            GeneID:7314 -> Biological process: GO:0002755 [MyD88-dependent toll-like receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0002756 [MyD88-independent toll-like receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0006281 [DNA repair] evidence: TAS
            GeneID:7314 -> Biological process: GO:0006351 [transcription, DNA-dependent] evidence: TAS
            GeneID:7314 -> Biological process: GO:0006367 [transcription initiation from RNA polymerase II promoter] evidence: TAS
            GeneID:7314 -> Biological process: GO:0006915 [apoptotic process] evidence: TAS
            GeneID:7314 -> Biological process: GO:0006977 [DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest] evidence: TAS
            GeneID:7314 -> Biological process: GO:0007173 [epidermal growth factor receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0007179 [transforming growth factor beta receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0007219 [Notch signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0007220 [Notch receptor processing] evidence: TAS
            GeneID:7314 -> Biological process: GO:0007249 [I-kappaB kinase/NF-kappaB cascade] evidence: TAS
            GeneID:7314 -> Biological process: GO:0007254 [JNK cascade] evidence: TAS
            GeneID:7314 -> Biological process: GO:0008543 [fibroblast growth factor receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0010467 [gene expression] evidence: TAS
            GeneID:7314 -> Biological process: GO:0016032 [viral process] evidence: TAS
            GeneID:7314 -> Biological process: GO:0016044 [cellular membrane organization] evidence: TAS
            GeneID:7314 -> Biological process: GO:0016070 [RNA metabolic process] evidence: TAS
            GeneID:7314 -> Biological process: GO:0016071 [mRNA metabolic process] evidence: TAS
            GeneID:7314 -> Biological process: GO:0016197 [endosomal transport] evidence: TAS
            GeneID:7314 -> Biological process: GO:0019067 [viral assembly, maturation, egress, and release] evidence: TAS
            GeneID:7314 -> Biological process: GO:0019068 [virion assembly] evidence: TAS
            GeneID:7314 -> Biological process: GO:0019082 [viral protein processing] evidence: TAS
            GeneID:7314 -> Biological process: GO:0019221 [cytokine-mediated signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0030512 [negative regulation of transforming growth factor beta receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0031145 [anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process] evidence: TAS
            GeneID:7314 -> Biological process: GO:0032479 [regulation of type I interferon production] evidence: TAS
            GeneID:7314 -> Biological process: GO:0032480 [negative regulation of type I interferon production] evidence: TAS
            GeneID:7314 -> Biological process: GO:0032481 [positive regulation of type I interferon production] evidence: TAS
            GeneID:7314 -> Biological process: GO:0034134 [toll-like receptor 2 signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0034138 [toll-like receptor 3 signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0034142 [toll-like receptor 4 signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0034146 [toll-like receptor 5 signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0034162 [toll-like receptor 9 signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0034166 [toll-like receptor 10 signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0034220 [ion transmembrane transport] evidence: TAS
            GeneID:7314 -> Biological process: GO:0035666 [TRIF-dependent toll-like receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0035872 [nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0038095 [Fc-epsilon receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0038123 [toll-like receptor TLR1:TLR2 signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0038124 [toll-like receptor TLR6:TLR2 signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0042059 [negative regulation of epidermal growth factor receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0042590 [antigen processing and presentation of exogenous peptide antigen via MHC class I] evidence: TAS
            GeneID:7314 -> Biological process: GO:0042981 [regulation of apoptotic process] evidence: TAS
            GeneID:7314 -> Biological process: GO:0043065 [positive regulation of apoptotic process] evidence: TAS
            GeneID:7314 -> Biological process: GO:0043066 [negative regulation of apoptotic process] evidence: TAS
            GeneID:7314 -> Biological process: GO:0043123 [positive regulation of I-kappaB kinase/NF-kappaB cascade] evidence: TAS
            GeneID:7314 -> Biological process: GO:0045087 [innate immune response] evidence: TAS
            GeneID:7314 -> Biological process: GO:0045944 [positive regulation of transcription from RNA polymerase II promoter] evidence: TAS
            GeneID:7314 -> Biological process: GO:0046788 [egress of virus within host cell] evidence: TAS
            GeneID:7314 -> Biological process: GO:0048011 [neurotrophin TRK receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0050852 [T cell receptor signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0051092 [positive regulation of NF-kappaB transcription factor activity] evidence: TAS
            GeneID:7314 -> Biological process: GO:0051403 [stress-activated MAPK cascade] evidence: TAS
            GeneID:7314 -> Biological process: GO:0051436 [negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle] evidence: TAS
            GeneID:7314 -> Biological process: GO:0051437 [positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle] evidence: TAS
            GeneID:7314 -> Biological process: GO:0051439 [regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle] evidence: TAS
            GeneID:7314 -> Biological process: GO:0055085 [transmembrane transport] evidence: TAS
            GeneID:7314 -> Biological process: GO:0061418 [regulation of transcription from RNA polymerase II promoter in response to hypoxia] evidence: TAS
            GeneID:7314 -> Biological process: GO:0070423 [nucleotide-binding oligomerization domain containing signaling pathway] evidence: TAS
            GeneID:7314 -> Biological process: GO:0071456 [cellular response to hypoxia] evidence: TAS
            GeneID:7314 -> Biological process: GO:0097190 [apoptotic signaling pathway] evidence: TAS
            GeneID:7314 -> Cellular component: GO:0005654 [nucleoplasm] evidence: TAS
            GeneID:7314 -> Cellular component: GO:0005829 [cytosol] evidence: TAS
            GeneID:7314 -> Cellular component: GO:0005886 [plasma membrane] evidence: TAS
            GeneID:7314 -> Cellular component: GO:0010008 [endosome membrane] evidence: TAS
            GeneID:7314 -> Cellular component: GO:0030666 [endocytic vesicle membrane] evidence: TAS

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 2.1 Japan License.