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2024-04-20 19:15:00, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_018433 4907 bp mRNA linear PRI 17-APR-2013
DEFINITION Homo sapiens lysine (K)-specific demethylase 3A (KDM3A), transcript
variant 1, mRNA.
ACCESSION NM_018433
VERSION NM_018433.5 GI:226442775
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4907)
AUTHORS Cho,H.S., Toyokawa,G., Daigo,Y., Hayami,S., Masuda,K., Ikawa,N.,
Yamane,Y., Maejima,K., Tsunoda,T., Field,H.I., Kelly,J.D.,
Neal,D.E., Ponder,B.A., Maehara,Y., Nakamura,Y. and Hamamoto,R.
TITLE The JmjC domain-containing histone demethylase KDM3A is a positive
regulator of the G1/S transition in cancer cells via
transcriptional regulation of the HOXA1 gene
JOURNAL Int. J. Cancer 131 (3), E179-E189 (2012)
PUBMED 22020899
REMARK GeneRIF: study demonstrates KDM3A is overexpressed in various types
of cancer and directly activates transcription of HOXA1 through
demethylation of histone H3K9 by binding to its promoter region
REFERENCE 2 (bases 1 to 4907)
AUTHORS Mimura,I., Nangaku,M., Kanki,Y., Tsutsumi,S., Inoue,T., Kohro,T.,
Yamamoto,S., Fujita,T., Shimamura,T., Suehiro,J., Taguchi,A.,
Kobayashi,M., Tanimura,K., Inagaki,T., Tanaka,T., Hamakubo,T.,
Sakai,J., Aburatani,H., Kodama,T. and Wada,Y.
TITLE Dynamic change of chromatin conformation in response to hypoxia
enhances the expression of GLUT3 (SLC2A3) by cooperative
interaction of hypoxia-inducible factor 1 and KDM3A
JOURNAL Mol. Cell. Biol. 32 (15), 3018-3032 (2012)
PUBMED 22645302
REMARK GeneRIF: KDM3A is recruited to the SLC2A3 locus in an
HIF1-dependent manner and demethylates H3K9me2 so as to upregulate
its expression.
REFERENCE 3 (bases 1 to 4907)
AUTHORS Yamada,D., Kobayashi,S., Yamamoto,H., Tomimaru,Y., Noda,T.,
Uemura,M., Wada,H., Marubashi,S., Eguchi,H., Tanemura,M., Doki,Y.,
Mori,M. and Nagano,H.
TITLE Role of the hypoxia-related gene, JMJD1A, in hepatocellular
carcinoma: clinical impact on recurrence after hepatic resection
JOURNAL Ann. Surg. Oncol. 19 (SUPPL 3), S355-S364 (2012)
PUBMED 21607773
REMARK GeneRIF: our results suggest that JMJD1A is a sensitive recurrence
marker, and JMJD1A can promote malignant transformation via
epithelial-mesenchymal transition.
REFERENCE 4 (bases 1 to 4907)
AUTHORS Guo,X., Lu,J., Wang,Y., Gui,Y., Duan,X. and Cai,Z.
TITLE Ascorbate antagonizes nickel ion to regulate JMJD1A expression in
kidney cancer cells
JOURNAL Acta Biochim. Biophys. Sin. (Shanghai) 44 (4), 330-338 (2012)
PUBMED 22318714
REMARK GeneRIF: Findings suggest that both Ni(2+) and ascorbate can
regulate the expression of histone demethylase JMJD1A, which is
important for cancer development or inhibition.
REFERENCE 5 (bases 1 to 4907)
AUTHORS Du,Z.M., Hu,L.F., Wang,H.Y., Yan,L.X., Zeng,Y.X., Shao,J.Y. and
Ernberg,I.
TITLE Upregulation of MiR-155 in nasopharyngeal carcinoma is partly
driven by LMP1 and LMP2A and downregulates a negative prognostic
marker JMJD1A
JOURNAL PLoS ONE 6 (4), E19137 (2011)
PUBMED 21541331
REMARK GeneRIF: Up-regulation of miR-155 in nasopharyngeal carcinoma is
partly driven by LMP1 and LMP2A, and results in downregulation of
JMJD1A.
Publication Status: Online-Only
REFERENCE 6 (bases 1 to 4907)
AUTHORS Sar,A., Ponjevic,D., Nguyen,M., Box,A.H. and Demetrick,D.J.
TITLE Identification and characterization of demethylase JMJD1A as a gene
upregulated in the human cellular response to hypoxia
JOURNAL Cell Tissue Res. 337 (2), 223-234 (2009)
PUBMED 19471969
REMARK GeneRIF: Immunohistochemical staining has revealed that JMJD1A is
widely expressed in tissues, even in cells that are not known to
express the androgen receptor, and is significantly increased in
smooth muscle cells upon hypoxia treatment.
REFERENCE 7 (bases 1 to 4907)
AUTHORS Beyer,S., Kristensen,M.M., Jensen,K.S., Johansen,J.V. and
Staller,P.
TITLE The histone demethylases JMJD1A and JMJD2B are transcriptional
targets of hypoxia-inducible factor HIF
JOURNAL J. Biol. Chem. 283 (52), 36542-36552 (2008)
PUBMED 18984585
REMARK GeneRIF: histone demethylases JMJD1A and JMJD2B are transcriptional
targets of hypoxia-inducible factor HIF
REFERENCE 8 (bases 1 to 4907)
AUTHORS Pollard,P.J., Loenarz,C., Mole,D.R., McDonough,M.A., Gleadle,J.M.,
Schofield,C.J. and Ratcliffe,P.J.
TITLE Regulation of Jumonji-domain-containing histone demethylases by
hypoxia-inducible factor (HIF)-1alpha
JOURNAL Biochem. J. 416 (3), 387-394 (2008)
PUBMED 18713068
REMARK GeneRIF: Results show that many genes regulated by hypoxia and
HIF-1alpha show patterns of induction with JMJD (Jumonji-domain
containing)1A and JMJD2B demonstrating robust, and JMJD2C more
modest, up-regulation by hypoxia.
REFERENCE 9 (bases 1 to 4907)
AUTHORS Wellmann,S., Bettkober,M., Zelmer,A., Seeger,K., Faigle,M.,
Eltzschig,H.K. and Buhrer,C.
TITLE Hypoxia upregulates the histone demethylase JMJD1A via HIF-1
JOURNAL Biochem. Biophys. Res. Commun. 372 (4), 892-897 (2008)
PUBMED 18538129
REMARK GeneRIF: These findings demonstrate that JMJD1A can be stimulated
by hypoxia both in vitro and in vivo involving binding of HIF-1 to
a specific HRE in the JMJD1A promoter.
REFERENCE 10 (bases 1 to 4907)
AUTHORS Yamane,K., Toumazou,C., Tsukada,Y., Erdjument-Bromage,H.,
Tempst,P., Wong,J. and Zhang,Y.
TITLE JHDM2A, a JmjC-containing H3K9 demethylase, facilitates
transcription activation by androgen receptor
JOURNAL Cell 125 (3), 483-495 (2006)
PUBMED 16603237
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from DB087171.1, BX647271.1,
AB018285.2 and BX648841.1.
On Apr 9, 2009 this sequence version replaced gi:156602657.
Summary: This gene encodes a zinc finger protein that contains a
jumonji domain and may play a role in hormone-dependent
transcriptional activation. Alternative splicing results in
multiple transcript variants. [provided by RefSeq, Apr 2009].
Transcript Variant: This variant (1) represents the longer
transcript. Both variants 1 and 2 encode the same protein.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: BX647752.1, BX647271.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
ERS025082, ERS025084 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-157 DB087171.1 3-159
158-231 DB087171.1 160-233
232-2643 BX647271.1 1-2412
2644-4889 AB018285.2 2407-4652
4890-4907 BX648841.1 4622-4639
FEATURES Location/Qualifiers
source 1..4907
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="2"
/map="2p11.2"
gene 1..4907
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/note="lysine (K)-specific demethylase 3A"
/db_xref="GeneID:55818"
/db_xref="HGNC:20815"
/db_xref="HPRD:11054"
/db_xref="MIM:611512"
exon 1..297
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 16
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace=""
/replace="g"
/db_xref="dbSNP:149510621"
variation 71
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:73949508"
misc_feature 274..276
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/note="upstream in-frame stop codon"
exon 298..513
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 311
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:367622060"
variation 313
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:371719009"
CDS 328..4293
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/note="testis-specific protein A; jumonji C
domain-containing histone demethylase 2A; jumonji domain
containing 1A; jumonji domain-containing protein 1A; jmjC
domain-containing histone demethylation protein 2A"
/codon_start=1
/product="lysine-specific demethylase 3A"
/protein_id="NP_060903.2"
/db_xref="GI:20357522"
/db_xref="CCDS:CCDS1990.1"
/db_xref="GeneID:55818"
/db_xref="HGNC:20815"
/db_xref="HPRD:11054"
/db_xref="MIM:611512"
/translation="
MVLTLGESWPVLVGRRFLSLSAADGSDGSHDSWDVERVAEWPWLSGTIRAVSHTDVTKKDLKVCVEFDGESWRKRRWIEVYSLLRRAFLVEHNLVLAERKSPEISERIVQWPAITYKPLLDKAGLGSITSVRFLGDQQRVFLSKDLLKPIQDVNSLRLSLTDNQIVSKEFQALIVKHLDESHLLKGDKNLVGSEVKIYSLDPSTQWFSATVINGNPASKTLQVNCEEIPALKIVDPSLIHVEVVHDNLVTCGNSARIGAVKRKSSENNGTLVSKQAKSCSEASPSMCPVQSVPTTVFKEILLGCTAATPPSKDPRQQSTPQAANSPPNLGAKIPQGCHKQSLPEEISSCLNTKSEALRTKPDVCKAGLLSKSSQIGTGDLKILTEPKGSCTQPKTNTDQENRLESVPQALTGLPKECLPTKASSKAELEIANPPELQKHLEHAPSPSDVSNAPEVKAGVNSDSPNNCSGKKVEPSALACRSQNLKESSVKVDNESCCSRSNNKIQNAPSRKSVLTDPAKLKKLQQSGEAFVQDDSCVNIVAQLPKCRECRLDSLRKDKEQQKDSPVFCRFFHFRRLQFNKHGVLRVEGFLTPNKYDNEAIGLWLPLTKNVVGIDLDTAKYILANIGDHFCQMVISEKEAMSTIEPHRQVAWKRAVKGVREMCDVCDTTIFNLHWVCPRCGFGVCVDCYRMKRKNCQQGAAYKTFSWLKCVKSQIHEPENLMPTQIIPGKALYDVGDIVHSVRAKWGIKANCPCSNRQFKLFSKPASKEDLKQTSLAGEKPTLGAVLQQNPSVLEPAAVGGEAASKPAGSMKPACPASTSPLNWLADLTSGNVNKENKEKQPTMPILKNEIKCLPPLPPLSKSSTVLHTFNSTILTPVSNNNSGFLRNLLNSSTGKTENGLKNTPKILDDIFASLVQNKTTSDLSKRPQGLTIKPSILGFDTPHYWLCDNRLLCLQDPNNKSNWNVFRECWKQGQPVMVSGVHHKLNSELWKPESFRKEFGEQEVDLVNCRTNEIITGATVGDFWDGFEDVPNRLKNEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTRRDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVYVGIPKGQCEQEEEVLKTIQDGDSDELTIKRFIEGKEKPGALWHIYAAKDTEKIREFLKKVSEEQGQENPADHDPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAVAMLKASESSFGKP
"
misc_feature 1117..1119
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/experiment="experimental evidence, no additional details
recorded"
/note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
(Q9Y4C1.4); phosphorylation site"
misc_feature 1660..1662
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/experiment="experimental evidence, no additional details
recorded"
/note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
(Q9Y4C1.4); phosphorylation site"
misc_feature 1714..1716
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/experiment="experimental evidence, no additional details
recorded"
/note="phosphorylation site"
misc_feature 2980..2994
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/experiment="experimental evidence, no additional details
recorded"
/note="propagated from UniProtKB/Swiss-Prot (Q9Y4C1.4);
Region: LXXLL motif"
misc_feature 3010..3012
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/experiment="experimental evidence, no additional details
recorded"
/note="N6-acetyllysine; propagated from
UniProtKB/Swiss-Prot (Q9Y4C1.4); acetylation site"
misc_feature 3517..3729
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/note="A domain family that is part of the cupin
metalloenzyme superfamily; Region: JmjC; smart00558"
/db_xref="CDD:197789"
misc_feature 3778..4119
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/note="JmjC domain, hydroxylase; Region: JmjC; pfam02373"
/db_xref="CDD:202224"
variation 351
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:146747408"
variation 396
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:376742455"
variation 444
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:202106084"
variation 451
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:140350293"
variation 464
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369307421"
variation 465
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201831015"
variation 493
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:373486115"
exon 514..669
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 516
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:61750270"
variation 582
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369893289"
variation 602
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201066011"
variation 614
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200567558"
variation 636
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:201724307"
variation 646
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:150111816"
variation 647
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:370041213"
exon 670..780
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 677
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:147119313"
variation 679
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:149635248"
variation 765
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:201247647"
exon 781..883
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 797
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:371044560"
variation 809
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:144363423"
variation 837
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:149847163"
exon 884..1008
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 885
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:201676265"
variation 888
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:199889240"
variation 907
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:13424350"
variation 927
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:371468714"
variation 961
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:2030259"
variation 965
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:149956438"
variation 990
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:145028659"
variation 998
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:142114358"
exon 1009..1081
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 1013
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:141140085"
variation 1068
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:147562032"
variation 1077
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:138895230"
exon 1082..1170
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 1116
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:112037053"
exon 1171..1334
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 1201
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:142836097"
variation 1210
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:146075276"
variation 1245
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:12714187"
variation 1254
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:34507616"
variation 1259
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369252210"
variation 1301
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200618359"
variation 1327
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:141469380"
exon 1335..1846
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 1336
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:369600731"
variation 1353
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:144371910"
variation 1375
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200135960"
variation 1384
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:372801997"
variation 1396
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:190266151"
variation 1398
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:370857741"
variation 1412
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:147819585"
variation 1423
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:375678230"
variation 1493
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:147565471"
variation 1551
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:377687083"
variation 1577
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:143405154"
variation 1578
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:151317388"
variation 1591
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:371235991"
variation 1609
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:375633577"
variation 1622
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:202001552"
variation 1625
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:145828031"
variation 1645
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:201238111"
variation 1666
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:34605051"
variation 1700
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:200322891"
variation 1704
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:367637779"
variation 1713
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:371865986"
variation 1736
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:149342312"
variation 1751
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:201713531"
variation 1774
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:376984244"
variation 1793
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:370074952"
variation 1814
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:148699286"
variation 1832
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:114134559"
exon 1847..2051
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 1880
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:368056764"
variation 1886
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:186664065"
variation 1887
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:189936092"
variation 1894
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:145137870"
variation 1914
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:371780877"
variation 1920
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:377529059"
variation 1927
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369654648"
variation 1936
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:149675674"
variation 1984
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:372242978"
variation 1985
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:145449611"
variation 1990
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200245801"
variation 2025
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:182665349"
exon 2052..2266
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2079
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:376795532"
variation 2085
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:368909599"
variation 2117
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:145066068"
variation 2126
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:148315398"
variation 2167
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:199499006"
variation 2201
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200823669"
variation 2212
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:373103393"
variation 2221..2222
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace=""
/replace="a"
/db_xref="dbSNP:35743643"
variation 2244
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:143719053"
exon 2267..2419
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2271
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:150409704"
variation 2367
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:142904861"
exon 2420..2515
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2446
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:199927808"
variation 2456
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:11677451"
exon 2516..2643
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2555
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:138136575"
variation 2593
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:199709370"
variation 2598
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:148645702"
variation 2616
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:369494425"
variation 2630
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:142113352"
exon 2644..2839
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2667
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:61748134"
variation 2678
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:199893416"
variation 2697
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200548258"
variation 2717
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200297487"
variation 2755
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:370225146"
variation 2761
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:373927646"
variation 2781
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201206984"
variation 2784
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:184960310"
variation 2786
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:368070515"
variation 2802
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:35269985"
variation 2803
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:145200665"
variation 2810
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:200464865"
variation 2817
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:143689515"
variation 2819
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:147014991"
exon 2840..3012
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2842
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:138225856"
variation 2854
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:150575235"
variation 2877
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:375164766"
variation 2928
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:144469383"
variation 2983
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:142313434"
variation 3002
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:145935155"
exon 3013..3249
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3027
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:372748418"
variation 3041
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:142454847"
variation 3083
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:78049080"
variation 3106
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:139335286"
variation 3136
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:34673273"
variation 3143
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:190315429"
variation 3165
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:36101015"
exon 3250..3421
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3252
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201396988"
variation 3262
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:191697909"
variation 3318
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:72932308"
variation 3321
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:373584625"
variation 3345
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:199894923"
variation 3369
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:373357673"
exon 3422..3509
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3438
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:148246875"
variation 3499
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:376473342"
exon 3510..3640
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3530
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:150326959"
variation 3543
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:193250409"
exon 3641..3760
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3653
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:202218940"
variation 3662
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201485490"
variation 3666
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201006430"
variation 3717
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369390153"
variation 3718
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:113985244"
variation 3743
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:145953450"
variation 3745
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:201986485"
variation 3747
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:201046362"
variation 3753
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:370871158"
exon 3761..3900
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3791
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:149432098"
variation 3888
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:76610646"
exon 3901..4077
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3901
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201909544"
variation 3905
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:17853822"
variation 3929
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:142941230"
variation 3939
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:147714531"
variation 3966
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:369677697"
variation 3974
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:144713807"
variation 4028
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:140420657"
variation 4032
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:202133365"
exon 4078..4212
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 4090
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:201570782"
variation 4110
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:61748136"
variation 4134
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:145484412"
variation 4138
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:376556978"
variation 4173
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:142497993"
variation 4174
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:61750310"
variation 4197
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:376277877"
variation 4210
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:367630615"
exon 4213..4890
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 4268
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:111516806"
variation 4284
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:34633400"
variation 4293
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:79419435"
variation 4294
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:80197631"
variation 4305
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369643667"
variation 4330
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:193258446"
variation 4384
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:139722069"
variation 4555
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:147187367"
variation 4584
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:183629545"
variation 4612
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace=""
/replace="g"
/db_xref="dbSNP:71739016"
variation 4621..4622
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace=""
/replace="caa"
/db_xref="dbSNP:113795219"
variation 4657
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:112355084"
polyA_signal 4871..4876
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
variation 4882
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:149690355"
variation 4884..4885
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace=""
/replace="ata"
/db_xref="dbSNP:374550598"
polyA_site 4890
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
ORIGIN
taatgggggtcgcccgggagtcggaagggggaggggaaagggaggaggcagccaaggaattgtttttttctctggccccgccctcgcccggggggccaatggtgatgatctgtttcccccggagcctcgcccagctcctgtgtttcagccaatgagcggcggaagcggctccgaggggggcgggtccgggaggctgtgcgtgtcttgtgagagctcttgaaccaagtcagcgctggagtcggctaggcggctggaaacggcggctgccgccggtgactcagggaggcgggaggcgggggaggagctcttcctgcaggcgtggaaaccatggtgctcacgctcggagaaagttggccggtattggtggggaggaggtttctcagtctgtccgcagccgacggcagcgatggcagccacgacagctgggacgtggagcgcgtcgccgagtggccctggctctccgggaccattcgagctgtttcccacaccgacgttaccaagaaggatctgaaggtgtgtgtggaatttgatggggaatcttggaggaaaagaagatggatagaagtctacagccttctaaggagagcatttttagtagaacataatttggttttagctgaacgaaagtcacctgaaatttctgaacgaattgtacagtggcctgcaataacgtacaaacctctgttggacaaagctggtttgggatccataacttctgttcgctttctgggagatcaacaaagagtatttctttctaaagaccttttgaagcctatacaggatgtaaacagtcttcgactttctcttacggataatcagattgtcagtaaagaatttcaagctttgattgtgaagcatttagatgaaagccatcttttaaaaggtgacaaaaacttagttggttcagaagtaaaaatttatagcttggacccatctactcagtggttttcagcaaccgttataaatggaaacccagcatcaaaaactcttcaagtcaactgtgaggagattccagcactgaaaattgttgatccgtcactgattcatgttgaagttgtacacgataaccttgtgacatgtggtaattctgcaagaattggagctgtaaaacgcaagtcttctgagaataatggaaccctggtttccaaacaagcaaaatcttgctctgaggcctctcccagtatgtgtcctgtgcagtctgtacctacaacagtttttaaggagatactgcttggctgtactgcggcaactccacctagtaaggacccaagacagcaaagtactccccaggctgccaactctccacctaaccttggagcaaaaattcctcaaggatgtcataaacaaagtttaccagaggaaatttcttcctgtctaaatacaaagtctgaagctctgagaacaaaaccagatgtctgcaaagcagggttgctctcaaagtcctctcagattggaactggagacttgaaaattctgactgagccaaaaggcagctgtactcagcctaagacaaacactgatcaggaaaacagattggagtctgttccacaagcattgactggccttcctaaggagtgcttacctacaaaggcttcttctaaggcagaattggaaattgccaatcctcctgaactgcagaagcacctagaacatgcaccttccccatcggatgtttcaaatgcaccagaagtgaaagcaggtgtcaatagtgatagccctaataactgttcaggaaaaaaggtagaaccttcagctttagcttgccgatcacagaatttaaaggaatcttcagtaaaagtagataatgaaagctgttgttcaagaagcaacaataaaatccagaatgccccatccaggaagtcggttttgacagacccagctaaactcaaaaagctgcaacagagtggcgaggccttcgtacaggatgattcttgtgtgaacatcgtggcacagttgcctaaatgccgagagtgtcgcttggacagtctccgcaaggataaggagcaacagaaggactcacctgtgttttgccgcttctttcacttcaggaggttacaattcaacaaacatggtgtgttgcgggtagaaggcttcttaacaccaaacaagtatgacaatgaagcaattggcttgtggttacctttaaccaaaaacgttgtggggattgatttggacacagcaaagtacatcttggccaacattggagaccacttctgtcaaatggtgatttctgaaaaggaagctatgtcaactattgagccacacagacaggttgcttggaagcgagctgtcaaaggtgttcgagaaatgtgtgatgtgtgcgacaccaccatcttcaacctgcactgggtgtgtcctcggtgtgggtttggagtatgtgtggactgctaccggatgaagagaaagaattgccaacagggtgctgcttacaagactttctcttggctaaaatgtgtgaagagtcagatacatgaaccagagaacttaatgcccacacagatcattcctggaaaagcactctatgatgttggagacattgttcattctgtaagagcgaaatggggaataaaggcaaactgcccttgttcaaacaggcaattcaaactcttttcaaagccagcctcaaaggaagacctaaaacagacttctttagctggagaaaaaccgactcttggtgcagtgctccagcagaatccctcagtgttggagccagcagctgtgggtggggaagcagcctccaagccagccggcagcatgaagcctgcctgtccagccagcacatctcctctaaactggctggccgacctaaccagcgggaatgtcaacaaggaaaacaaggaaaaacaaccaacaatgccaattttaaagaatgaaatcaaatgccttccacccctcccacctttaagcaaatccagcacagtcctccatacgtttaacagcacaattttgacacccgtaagcaacaacaattctggtttcctccggaatctcttgaattcttctacaggaaagacagaaaatggactcaagaatacaccaaaaatccttgatgacatctttgcctctttggtgcaaaataagacgacttctgatttatctaagaggcctcaaggactaaccatcaagcccagcattctgggctttgacactcctcactattggctttgtgataatcgcttgctgtgcttgcaagaccccaacaataagagcaactggaatgtgtttagggagtgctggaaacaagggcagccagtgatggtgtctggagtgcatcataaattgaactctgaactttggaaacctgaatccttcaggaaagagtttggtgagcaggaagtagacctagttaattgtaggaccaatgaaatcatcacaggagccacagtaggagacttctgggatggatttgaagatgttccaaatcgtttgaaaaatgaaaaagaaccaatggtgttgaaacttaaggactggccaccaggagaagattttagagatatgatgccttccaggtttgatgatctgatggccaacattccactgcccgagtacacaaggcgagatggcaaactgaatttggcctctaggctgccaaactactttgttcggccagatctgggccccaagatgtataatgcttatggattaatcactcctgaagatcggaaatatggaacaacaaatcttcacttagatgtatctgatgcagctaatgtcatggtctatgtgggaattcccaaaggacagtgtgagcaagaagaagaagtccttaagaccatccaagatggagattctgacgaactcacaataaagcgatttattgaaggaaaagagaagccaggagcactgtggcacatatatgctgcaaaggacacggagaagataagggaatttcttaaaaaggtatcagaagagcaaggtcaagaaaacccagcagaccacgatcctattcatgatcaaagctggtatttagaccgatcattaagaaaacgtcttcatcaagagtatggagttcaaggctgggctattgtacagtttcttggggatgtggtgtttatcccggcaggagctccacatcaggttcataacttatatagctgcatcaaagtggctgaagattttgtttctccagagcatgttaaacactgcttctggcttactcaggaattccgatatctgtcacagactcataccaatcacgaagataaattacaggtgaagaatgttatctaccatgcagtgaaagatgcagttgctatgctgaaagccagtgaatccagttttggcaaaccttaatctccctgcacattggaaatgaattacaggcagctgttcaaactcttcaggcaggattcctgtggactttgagattcatgttacctcatcttcttttttaaactgtacccaacttgtgagggtactctgtctaatgtatatttctagtgtttacagacagtaaatgtgtatatgtagtaactatttacagaacatgcatccttaaactgtgacttctcacctagtgcagaacttttaccaggctgtaaaagcaaaacctcgtatcagctctggaacaatacctgcagttattcttcagctgtttggacaacttagattgggtttataactattaggaatcactgcacagtttatttgggttgtgttttgtgtctgagtcccctccctcatcccttagggtccagaagagcaatggaggaagtgacagctaatgttgcagttcttattgtatggcataggactggcattatatagcagaaatcaactactgtacaatttcttggggttaaccatctttagttaaatggaattttaatttaaatgacgctttgctaattttaagtgttaagcattttgcattaaaatattcatataataaaaaaaaaaaaaaaaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:55818 -> Molecular function: GO:0000976 [transcription regulatory region sequence-specific DNA binding] evidence: IEA
GeneID:55818 -> Molecular function: GO:0001047 [core promoter binding] evidence: IEA
GeneID:55818 -> Molecular function: GO:0003700 [sequence-specific DNA binding transcription factor activity] evidence: IEA
GeneID:55818 -> Molecular function: GO:0005506 [iron ion binding] evidence: IMP
GeneID:55818 -> Molecular function: GO:0016702 [oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen] evidence: IEA
GeneID:55818 -> Molecular function: GO:0050681 [androgen receptor binding] evidence: IDA
GeneID:55818 -> Biological process: GO:0006351 [transcription, DNA-dependent] evidence: IEA
GeneID:55818 -> Biological process: GO:0007290 [spermatid nucleus elongation] evidence: IEA
GeneID:55818 -> Biological process: GO:0009755 [hormone-mediated signaling pathway] evidence: IDA
GeneID:55818 -> Biological process: GO:0030521 [androgen receptor signaling pathway] evidence: IDA
GeneID:55818 -> Biological process: GO:0033169 [histone H3-K9 demethylation] evidence: IDA
GeneID:55818 -> Biological process: GO:0036123 [histone H3-K9 dimethylation] evidence: IEA
GeneID:55818 -> Biological process: GO:0045893 [positive regulation of transcription, DNA-dependent] evidence: IMP
GeneID:55818 -> Biological process: GO:0045944 [positive regulation of transcription from RNA polymerase II promoter] evidence: IEA
GeneID:55818 -> Biological process: GO:0046293 [formaldehyde biosynthetic process] evidence: IDA
GeneID:55818 -> Biological process: GO:0051573 [negative regulation of histone H3-K9 methylation] evidence: IEA
GeneID:55818 -> Cellular component: GO:0005634 [nucleus] evidence: IDA
GeneID:55818 -> Cellular component: GO:0005737 [cytoplasm] evidence: IEA
by
@meso_cacase at
DBCLS
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