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2020-10-24 07:03:55, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_018306               1710 bp    mRNA    linear   PRI 17-APR-2013
DEFINITION  Homo sapiens transmembrane protein 40 (TMEM40), mRNA.
ACCESSION   NM_018306
VERSION     NM_018306.2  GI:31542666
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1710)
  AUTHORS   Macaulay,I.C., Tijssen,M.R., Thijssen-Timmer,D.C., Gusnanto,A.,
            Steward,M., Burns,P., Langford,C.F., Ellis,P.D., Dudbridge,F.,
            Zwaginga,J.J., Watkins,N.A., van der Schoot,C.E. and Ouwehand,W.H.
  TITLE     Comparative gene expression profiling of in vitro differentiated
            megakaryocytes and erythroblasts identifies novel activatory and
            inhibitory platelet membrane proteins
  JOURNAL   Blood 109 (8), 3260-3269 (2007)
   PUBMED   17192395
REFERENCE   2  (bases 1 to 1710)
  AUTHORS   Gevaert,K., Goethals,M., Martens,L., Van Damme,J., Staes,A.,
            Thomas,G.R. and Vandekerckhove,J.
  TITLE     Exploring proteomes and analyzing protein processing by mass
            spectrometric identification of sorted N-terminal peptides
  JOURNAL   Nat. Biotechnol. 21 (5), 566-569 (2003)
   PUBMED   12665801
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AK092470.1.
            On Jun 9, 2003 this sequence version replaced gi:8922834.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK092470.1, BX334345.2 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           ERS025081, ERS025083 [ECO:0000350]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1710
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="3"
                     /map="3p25.2"
     gene            1..1710
                     /gene="TMEM40"
                     /note="transmembrane protein 40"
                     /db_xref="GeneID:55287"
                     /db_xref="HGNC:25620"
                     /db_xref="HPRD:08559"
     exon            1..119
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    107..109
                     /gene="TMEM40"
                     /note="upstream in-frame stop codon"
     exon            120..200
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     CDS             128..829
                     /gene="TMEM40"
                     /codon_start=1
                     /product="transmembrane protein 40"
                     /protein_id="NP_060776.2"
                     /db_xref="GI:31542667"
                     /db_xref="CCDS:CCDS2613.1"
                     /db_xref="GeneID:55287"
                     /db_xref="HGNC:25620"
                     /db_xref="HPRD:08559"
                     /translation="
METSASSSQPQDNSQVHRETEDVDYGETDFHKQDGKAGLFSQEQYERNKSSSSSSSSSSSSSSSSSSSSSESNDEDQQPRATGKHRRSLGAGYPHGNGSPGPGHGEPDVLKDELQLYGDAPGEVVPSGESGLRRRGSDPASGEVEASQLRRLNIKKDDEFFHFVLLCFAIGALLVCYHYYADWFMSLGVGLLTFASLETVGIYFGLVYRIHSVLQGFIPLFQKFRLTGFRKTD
"
     misc_feature    128..130
                     /gene="TMEM40"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="N-acetylmethionine; propagated from
                     UniProtKB/Swiss-Prot (Q8WWA1.2); acetylation site"
     misc_feature    536..538
                     /gene="TMEM40"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q8WWA1.2); phosphorylation site"
     misc_feature    605..667
                     /gene="TMEM40"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8WWA1.2);
                     transmembrane region"
     misc_feature    686..748
                     /gene="TMEM40"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8WWA1.2);
                     transmembrane region"
     exon            201..338
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     exon            339..428
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     exon            429..482
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     exon            483..518
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     exon            519..551
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     exon            552..599
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     exon            600..671
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     exon            672..746
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     exon            747..809
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     exon            810..1710
                     /gene="TMEM40"
                     /inference="alignment:Splign:1.39.8"
     variation       878
                     /gene="TMEM40"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:11549481"
ORIGIN      
agtcccgccctccttgctgtcacaggtgcagcctgtcctctccttcccctgaccagcccagcatccacatagtctacacagagctccccttgctgcccagacaagctgaaggaccacaggaaaagccatggagacttcagcatcctcctcccagcctcaggacaacagtcaagtccacagagaaacagaagatgtagactatggagagacagatttccacaagcaagatgggaaggctggactcttttcccaagaacaatatgagagaaacaagtcttcttcctcctcctcctcttcctcctcatcctcctcatcttcttcatcctcctcctcctcagagagcaatgatgaggaccagcaacccagagcaaccggaaaacatcgacggagcctgggggctggatacccccacgggaacggctcacccggtcctgggcatggggagcctgacgttttgaaggatgagcttcaactctatggagatgctcctggagaggtggtaccctctggggaatcaggactccgaaggagaggctctgacccagcaagtggagaagtggaggcctctcagttaagaagactgaatataaagaaagatgatgagtttttccatttcgtcctcctgtgctttgccatcggggccttgctggtgtgttatcactattacgcagactggttcatgtctcttggggtcggcctgctcaccttcgcctccctggaaaccgttggcatctacttcggactagtgtaccgtatccacagcgtcctccaaggcttcatccccctcttccagaagtttaggctgacagggttcaggaagactgactgaggccacttccaggtgggcagcagaggcaggccccagtgtgaccaccactgcgacccctgagcccacaagggcagagcagcgttctgagagacgcacaggagaccaagccagaccaataaacagaacacttttccttccatgtggtctgaatgttggcaccagcccgggcaggggcatctcatttgggcagtactgctgtgcaacccagctgcaaggatggaaggcagagggtgggtgtggggcctgaggcttcacagtacctggaccagcaggaagattctgggaggtcactgctctcagaggacagcaagggaccctgagctctgcaagctgtgatctgtctgggttcatggtttttctcaaatcccaggctatctgcatgcgctctcaggtgctaccgagccatcctgggagagatggatggtccactgctttgaggcagggagccatcgggctggggccccttggtgaacctgatgcaggtaagatgctgaggactaaaaccattttttttgcacccaaaaaaaaaggcaggaaaatgatcatcagaaactaaatggcagccaggcatgggggctcacaactgtaatcctcgcactttgggaggctcaggctaagggtcgcttgaagctgagagttcaagaccaacctgggcaacatagtgagacccccatctctacaatttttttttaatgaccaaatgtggcggtacatacctgtacatacctgcggttccagctactcaagaggctgaggcaggaggactgcttgagcccaggagttcagggctgcagtgaggtacgatcaagccactgcactccagcctgggcgacagagcaagatcgtttctctaaaattaaaaaaaaaaaaaaaagacaaat
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:55287 -> Cellular component: GO:0016021 [integral to membrane] evidence: IEA

by @meso_cacase at DBCLS
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