2024-03-29 10:32:29, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_016479 2187 bp mRNA linear PRI 14-MAY-2013 DEFINITION Homo sapiens shisa homolog 5 (Xenopus laevis) (SHISA5), transcript variant 1, mRNA. ACCESSION NM_016479 VERSION NM_016479.4 GI:441418783 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2187) AUTHORS So,H.C., Fong,P.Y., Chen,R.Y., Hui,T.C., Ng,M.Y., Cherny,S.S., Mak,W.W., Cheung,E.F., Chan,R.C., Chen,E.Y., Li,T. and Sham,P.C. TITLE Identification of neuroglycan C and interacting partners as potential susceptibility genes for schizophrenia in a Southern Chinese population JOURNAL Am. J. Med. Genet. B Neuropsychiatr. Genet. 153B (1), 103-113 (2010) PUBMED 19367581 REMARK GeneRIF: Observational study of gene-disease association and gene-gene interaction. (HuGE Navigator) REFERENCE 2 (bases 1 to 2187) AUTHORS Draeby,I., Woods,Y.L., la Cour,J.M., Mollerup,J., Bourdon,J.C. and Berchtold,M.W. TITLE The calcium binding protein ALG-2 binds and stabilizes Scotin, a p53-inducible gene product localized at the endoplasmic reticulum membrane JOURNAL Arch. Biochem. Biophys. 467 (1), 87-94 (2007) PUBMED 17889823 REMARK GeneRIF: ALG-2 binding to Scotin is strictly calcium dependent, indicating a role of this interaction in calcium signaling pathways REFERENCE 3 (bases 1 to 2187) AUTHORS Ludes-Meyers,J.H., Kil,H., Bednarek,A.K., Drake,J., Bedford,M.T. and Aldaz,C.M. TITLE WWOX binds the specific proline-rich ligand PPXY: identification of candidate interacting proteins JOURNAL Oncogene 23 (29), 5049-5055 (2004) PUBMED 15064722 REFERENCE 4 (bases 1 to 2187) AUTHORS Matsuda,A., Suzuki,Y., Honda,G., Muramatsu,S., Matsuzaki,O., Nagano,Y., Doi,T., Shimotohno,K., Harada,T., Nishida,E., Hayashi,H. and Sugano,S. TITLE Large-scale identification and characterization of human genes that activate NF-kappaB and MAPK signaling pathways JOURNAL Oncogene 22 (21), 3307-3318 (2003) PUBMED 12761501 REFERENCE 5 (bases 1 to 2187) AUTHORS Bourdon,J.C., Renzing,J., Robertson,P.L., Fernandes,K.N. and Lane,D.P. TITLE Scotin, a novel p53-inducible proapoptotic protein located in the ER and the nuclear membrane JOURNAL J. Cell Biol. 158 (2), 235-246 (2002) PUBMED 12135983 REMARK GeneRIF: Scotin plays a role in p53-dependent apoptosis COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BI552637.1 and AF520698.1. On Jan 11, 2013 this sequence version replaced gi:21703709. Summary: This gene encodes a member of the shisa family. The encoded protein is localized to the endoplasmic reticulum, and together with p53 induces apoptosis in a caspase-dependent manner. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2013]. Transcript Variant: This variant (1) encodes the longest isoform (a). ##Evidence-Data-START## Transcript exon combination :: AF520698.1, AK075441.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025084, ERS025088 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-21 BI552637.1 6-26 22-2187 AF520698.1 1-2166 FEATURES Location/Qualifiers source 1..2187 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="3" /map="3p21.31" gene 1..2187 /gene="SHISA5" /gene_synonym="SCOTIN" /note="shisa homolog 5 (Xenopus laevis)" /db_xref="GeneID:51246" /db_xref="HGNC:30376" /db_xref="HPRD:06290" /db_xref="MIM:607290" exon 1..231 /gene="SHISA5" /gene_synonym="SCOTIN" /inference="alignment:Splign:1.39.8" CDS 156..878 /gene="SHISA5" /gene_synonym="SCOTIN" /note="isoform a precursor is encoded by transcript variant 1; putative NF-kappa-B-activating protein 120" /codon_start=1 /product="protein shisa-5 isoform a precursor" /protein_id="NP_057563.3" /db_xref="GI:21703710" /db_xref="CCDS:CCDS2770.1" /db_xref="GeneID:51246" /db_xref="HGNC:30376" /db_xref="HPRD:06290" /db_xref="MIM:607290" /translation="
MTAPVPAPRILLPLLLLLLLTPPPGARGEVCMASRGLSLFPESCPDFCCGTCDDQYCCSDVLKKFVWSEERCAVPEASVPASVEPVEQLGSALRFRPGYNDPMSGFGATLAVGLTIFVLSVVTIIICFTCSCCCLYKTCRRPRPVVTTTTSTTVVHAPYPQPPSVPPSYPGPSYQGYHTMPPQPGMPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAAL
" sig_peptide 156..239 /gene="SHISA5" /gene_synonym="SCOTIN" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 231..>587 /gene="SHISA5" /gene_synonym="SCOTIN" /note="Wnt and FGF inhibitory regulator; Region: Shisa; pfam13908" /db_xref="CDD:206079" mat_peptide 240..875 /gene="SHISA5" /gene_synonym="SCOTIN" /product="Protein shisa-5" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q8N114.1)" misc_feature 471..533 /gene="SHISA5" /gene_synonym="SCOTIN" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q8N114.1); transmembrane region" exon 232..388 /gene="SHISA5" /gene_synonym="SCOTIN" /inference="alignment:Splign:1.39.8" exon 389..469 /gene="SHISA5" /gene_synonym="SCOTIN" /inference="alignment:Splign:1.39.8" exon 470..585 /gene="SHISA5" /gene_synonym="SCOTIN" /inference="alignment:Splign:1.39.8" exon 586..798 /gene="SHISA5" /gene_synonym="SCOTIN" /inference="alignment:Splign:1.39.8" exon 799..2187 /gene="SHISA5" /gene_synonym="SCOTIN" /inference="alignment:Splign:1.39.8" variation 1814 /gene="SHISA5" /gene_synonym="SCOTIN" /replace="a" /replace="g" /db_xref="dbSNP:1046093" variation 1938 /gene="SHISA5" /gene_synonym="SCOTIN" /replace="c" /replace="t" /db_xref="dbSNP:1062992" polyA_signal 2090..2095 /gene="SHISA5" /gene_synonym="SCOTIN" polyA_site 2109 /gene="SHISA5" /gene_synonym="SCOTIN" /note="The 3' most polyA site has not been determined. This is the predominant polyA site." ORIGIN
ctcctcctcctcctgctcccccggacagaggttccgggaaccagccgggccggggcggggcggggcgagggagaggggcggccgcgcggatcactgaggctgtggcggcactgcgcccggcgctcgcgtccgtccgcccgtccgcccgcccagccatgactgcgccggtccccgcgccgcggatcctgttgccgttgctgttgctgctgctgctaacgccgcctccgggtgcacgtggtgaggtgtgtatggcttcccgtggactcagcctcttccccgagtcctgtccagatttctgctgtggtacctgtgatgaccaatactgctgctctgacgtgctgaagaaatttgtgtggagcgaggaaaggtgtgctgtgcctgaggccagcgtgcctgccagtgtagagccggtggagcagctgggctcggcgctgaggtttcgccctggctacaacgaccccatgtcagggttcggagcgaccttggccgttggcctgaccatctttgtgctgtctgtcgtcactatcatcatctgcttcacctgctcctgctgctgcctttacaagacgtgccgccgaccacgtccggttgtcaccaccaccacatccaccactgtggtgcatgccccttatcctcagcctccaagtgtgccgcccagctaccctggaccaagctaccagggctaccacaccatgccgcctcagccagggatgccagcagcaccctacccaatgcagtacccaccaccttacccagcccagcccatgggcccaccggcctaccacgagaccctggctggaggagcagccgcgccctaccccgccagccagcctccttacaacccggcctacatggatgccccgaaggcggccctctgagcattccctggcctctctggctgccacttggttatgttgtgtgtgtgcgtgagtggtgtgcaggcgcggttccttacgccccatgtgtgctgtgtgtgtccaggcacggttccttacgccccatgtgtgctgtgtgtgtcctgcctgtatatgtggcttcctctgatgctgacaaggtggggaacaatccttgccagagtgggctgggaccagactttgttctcttcctcacctgaaattatgcttcctaaaatctcaagccaaactcaaagaatggggtggtggggggcaccctgtgaggtggcccctgagaggtgggggcctctccagggcacatctggagttcttctccagcttaccctagggtgaccaagtagggcctgtcacaccagggtggcgcagctttctgtgtgatgcagatgtgtcctggtttcggcagcgtagccagctgctgcttgaggccatggctcgtccccggagttgggggtacccgttgcagagccagggacatgatgcaggcgaagcttgggatctggccaagttggactttgatcctttgggcagatgtcccattgctccctggagcctgtcatgcctgttggggatcaggcagcctcctgatgccagaacacctcaggcagagccctactcagctgtacctgtctgcctggactgtcccctgtccccgcatctcccctgggaccagctggagggccacatgcacacacagcctagctgcccccagggagctctgctgcccttgctggccctgcccttcccacaggtgagcagggctcctgtccaccagcacactcagttctcttccctgcagtgttttcattttattttagccaaacattttgcctgttttctgtttcaaacatgatagttgatatgagactgaaacccctgggttgtggagggaaattggctcagagatggacaacctggcaactgtgagtccctgcttcccgacaccagcctcatggaatatgcaacaactcctgtaccccagtccacggtgttctggcagcagggacacctgggccaatgggccatctggaccaaaggtggggtgtggggccctggatggcagctctggcccagacatgaatacctcgtgttcctcctccctctattactgtttcaccagagctgtcttagctcaaatctgttgtgtttctgagtctagggtctgtacacttgtttataataaatgcaatcgtttggagctgctgccccctttcttcctggcctcggctgctggaattggaatcaggctgtactctttccatccatttgggcttct
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:51246 -> Molecular function: GO:0004871 [signal transducer activity] evidence: IMP GeneID:51246 -> Molecular function: GO:0005515 [protein binding] evidence: IPI GeneID:51246 -> Molecular function: GO:0050699 [WW domain binding] evidence: IPI GeneID:51246 -> Biological process: GO:0006915 [apoptotic process] evidence: IEA GeneID:51246 -> Biological process: GO:0006917 [induction of apoptosis] evidence: IEA GeneID:51246 -> Biological process: GO:0007165 [signal transduction] evidence: IMP GeneID:51246 -> Biological process: GO:0043123 [positive regulation of I-kappaB kinase/NF-kappaB cascade] evidence: IMP GeneID:51246 -> Cellular component: GO:0005789 [endoplasmic reticulum membrane] evidence: IEA GeneID:51246 -> Cellular component: GO:0016021 [integral to membrane] evidence: IEA GeneID:51246 -> Cellular component: GO:0031965 [nuclear membrane] evidence: IEA
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