GGRNA Home | Help | Advanced search

2024-03-28 22:53:27, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_016374               6067 bp    mRNA    linear   PRI 17-APR-2013
DEFINITION  Homo sapiens AT rich interactive domain 4B (RBP1-like) (ARID4B),
            transcript variant 1, mRNA.
ACCESSION   NM_016374
VERSION     NM_016374.5  GI:118136292
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 6067)
  AUTHORS   Winter,S.F., Lukes,L., Walker,R.C., Welch,D.R. and Hunter,K.W.
  TITLE     Allelic variation and differential expression of the mSIN3A histone
            deacetylase complex gene Arid4b promote mammary tumor growth and
            metastasis
  JOURNAL   PLoS Genet. 8 (5), E1002735 (2012)
   PUBMED   22693453
  REMARK    GeneRIF: Consistent with our genetic analysis and in vivo
            experiments in our mouse model system, ARID4B expression was also
            an independent predictor of distant metastasis-free survival in
            breast cancer patients with ER+ tumors
REFERENCE   2  (bases 1 to 6067)
  AUTHORS   Xu,Y., Li,F., Zhang,B., Zhang,K., Zhang,F., Huang,X., Sun,N.,
            Ren,Y., Sui,M. and Liu,P.
  TITLE     MicroRNAs and target site screening reveals a pre-microRNA-30e
            variant associated with schizophrenia
  JOURNAL   Schizophr. Res. 119 (1-3), 219-227 (2010)
   PUBMED   20347265
  REMARK    GeneRIF: Observational study of gene-disease association and
            gene-gene interaction. (HuGE Navigator)
REFERENCE   3  (bases 1 to 6067)
  AUTHORS   Beausoleil,S.A., Jedrychowski,M., Schwartz,D., Elias,J.E.,
            Villen,J., Li,J., Cohn,M.A., Cantley,L.C. and Gygi,S.P.
  TITLE     Large-scale characterization of HeLa cell nuclear phosphoproteins
  JOURNAL   Proc. Natl. Acad. Sci. U.S.A. 101 (33), 12130-12135 (2004)
   PUBMED   15302935
REFERENCE   4  (bases 1 to 6067)
  AUTHORS   Cui,D., Jin,G., Gao,T., Sun,T., Tian,F., Estrada,G.G., Gao,H. and
            Sarai,A.
  TITLE     Characterization of BRCAA1 and its novel antigen epitope
            identification
  JOURNAL   Cancer Epidemiol. Biomarkers Prev. 13 (7), 1136-1145 (2004)
   PUBMED   15247124
  REMARK    GeneRIF: Immunohistochemistry analysis showed that the antigen
            epitope exhibited positive expression in 65% (39 of 60) breast
            cancer specimens and negative expression in 60 non-cancerous
            tissues. A novel breast cancer antigen epitope, SSKKQKRSHK, is
            identified
REFERENCE   5  (bases 1 to 6067)
  AUTHORS   Fleischer,T.C., Yun,U.J. and Ayer,D.E.
  TITLE     Identification and characterization of three new components of the
            mSin3A corepressor complex
  JOURNAL   Mol. Cell. Biol. 23 (10), 3456-3467 (2003)
   PUBMED   12724404
REFERENCE   6  (bases 1 to 6067)
  AUTHORS   Bommel,H., Xie,G., Rossoll,W., Wiese,S., Jablonka,S., Boehm,T. and
            Sendtner,M.
  TITLE     Missense mutation in the tubulin-specific chaperone E (Tbce) gene
            in the mouse mutant progressive motor neuronopathy, a model of
            human motoneuron disease
  JOURNAL   J. Cell Biol. 159 (4), 563-569 (2002)
   PUBMED   12446740
REFERENCE   7  (bases 1 to 6067)
  AUTHORS   Andersen,J.S., Lyon,C.E., Fox,A.H., Leung,A.K., Lam,Y.W., Steen,H.,
            Mann,M. and Lamond,A.I.
  TITLE     Directed proteomic analysis of the human nucleolus
  JOURNAL   Curr. Biol. 12 (1), 1-11 (2002)
   PUBMED   11790298
REFERENCE   8  (bases 1 to 6067)
  AUTHORS   Cao,J., Gao,T., Stanbridge,E.J. and Irie,R.
  TITLE     RBP1L1, a retinoblastoma-binding protein-related gene encoding an
            antigenic epitope abundantly expressed in human carcinomas and
            normal testis
  JOURNAL   J. Natl. Cancer Inst. 93 (15), 1159-1165 (2001)
   PUBMED   11481388
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from AL391994.28, AB210032.1 and
            AL133418.4.
            This sequence is a reference standard in the RefSeqGene project.
            On Nov 17, 2006 this sequence version replaced gi:22035676.
            
            Summary: This gene encodes a protein with sequence similarity to
            retinoblastoma-binding protein-1. The encoded protein is a subunit
            of the histone deacetylase-dependant SIN3A transcriptional
            corepressor complex, which functions in diverse cellular processes
            including proliferation, differentiation, apoptosis, oncogenesis,
            and cell fate determination. The gene product is recognized by IgG
            antibody isolated from a breast cancer patient and appears to be a
            molecular marker associated with a broad range of human
            malignancies. Alternate transcriptional splice variants encoding
            different isoforms have been characterized. [provided by RefSeq,
            Jul 2008].
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longer isoform (1). Variants 1 and 3
            encode the same isoform.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC143719.1 [ECO:0000332]
            RNAseq introns              :: mixed/partial sample support
                                           ERS025081, ERS025082 [ECO:0000350]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-449               AL391994.28        109843-110291       c
            450-5665            AB210032.1         329-5544
            5666-6067           AL133418.4         24554-24955         c
FEATURES             Location/Qualifiers
     source          1..6067
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
                     /map="1q42.1-q43"
     gene            1..6067
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /note="AT rich interactive domain 4B (RBP1-like)"
                     /db_xref="GeneID:51742"
                     /db_xref="HGNC:15550"
                     /db_xref="HPRD:10661"
                     /db_xref="MIM:609696"
     exon            1..449
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            450..504
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     misc_feature    457..459
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /note="upstream in-frame stop codon"
     CDS             499..4437
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /note="isoform 1 is encoded by transcript variant 1;
                     Rb-binding protein homolog; retinoblastoma-binding protein
                     1-like 1; breast carcinoma-associated antigen; breast
                     cancer-associated antigen 1; SIN3A-associated protein 180;
                     sin3-associated polypeptide p180; ARID domain-containing
                     protein 4B; 180 kDa Sin3-associated polypeptide; breast
                     cancer-associated antigen BRCAA1; histone deacetylase
                     complex subunit SAP180"
                     /codon_start=1
                     /product="AT-rich interactive domain-containing protein 4B
                     isoform 1"
                     /protein_id="NP_057458.4"
                     /db_xref="GI:22035677"
                     /db_xref="CCDS:CCDS31061.1"
                     /db_xref="GeneID:51742"
                     /db_xref="HGNC:15550"
                     /db_xref="HPRD:10661"
                     /db_xref="MIM:609696"
                     /translation="
MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRHDSSTVEVQDDHIKGPLKVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLRRSSLCLKGERHFAESETLDQLPLTNPEHFGTPVIGKKTNRGRRSNHIPEEESSSSSSDEDEDDRKQIDELLGKVVCVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFKDGKFTSVPRKDVHEITSDTAPKPDAVLKQAFEQALEFHKSRTIPANWKTELKEDSSSSEAEEEEEEEDDEKEKEDNSSEEEEEIEPFPEERENFLQQLYKFMEDRGTPINKRPVLGYRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLGIPVLNSAAGYNVKCAYKKYLYGFEEYCRSANIEFQMALPEKVVNKQCKECENVKEIKVKEENETEIKEIKMEEERNIIPREEKPIEDEIERKENIKPSLGSKKNLLESIPTHSDQEKEVNIKKPEDNENLDDKDDDTTRVDESLNIKVEAEEEKAKSGDETNKEEDEDDEEAEEEEEEEEEEEDEDDDDNNEEEEFECYPPGMKVQVRYGRGKNQKMYEASIKDSDVEGGEVLYLVHYCGWNVRYDEWIKADKIVRPADKNVPKIKHRKKIKNKLDKEKDKDEKYSPKNCKLRRLSKPPFQTNPSPEMVSKLDLTDAKNSDTAHIKSIEITSILNGLQASESSAEDSEQEDERGAQDMDNNGKEESKIDHLTNNRNDLISKEEQNSSSLLEENKVHADLVISKPVSKSPERLRKDIEVLSEDTDYEEDEVTKKRKDVKKDTTDKSSKPQIKRGKRRYCNTEECLKTGSPGKKEEKAKNKESLCMENSSNSSSDEDEEETKAKMTPTKKYNGLEEKRKSLRTTGFYSGFSEVAEKRIKLLNNSDERLQNSRAKDRKDVWSSIQGQWPKKTLKELFSDSDTEAAASPPHPAPEEGVAEESLQTVAEEESCSPSVELEKPPPVNVDSKPIEEKTVEVNDRKAEFPSSGSNSVLNTPPTTPESPSSVTVTEGSRQQSSVTVSEPLAPNQEEVRSIKSETDSTIEVDSVAGELQDLQSEGNSSPAGFDASVSSSSSNQPEPEHPEKACTGQKRVKDAQGGGSSSKKQKRSHKATVVNNKKKGKGTNSSDSEELSAGESITKSQPVKSVSTGMKSHSTKSPARTQSPGKCGKNGDKDPDLKEPSNRLPKVYKWSFQMSDLENMTSAERITILQEKLQEIRKHYLSLKSEVASIDRRRKRLKKKERESAATSSSSSSPSSSSITAAVMLTLAEPSMSSASQNGMSVECR
"
     misc_feature    670..837
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /note="Tudor domain; Region: TUDOR; smart00333"
                     /db_xref="CDD:197660"
     misc_feature    994..1290
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /note="RBB1NT (NUC162) domain; Region: RBB1NT; pfam08169"
                     /db_xref="CDD:149305"
     misc_feature    1324..1326
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q4LE39.2); phosphorylation site"
     misc_feature    1429..1680
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /note="ARID/BRIGHT DNA binding domain; Region: ARID;
                     smart01014"
                     /db_xref="CDD:198082"
     misc_feature    1891..1917
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q4LE39.2);
                     Region: Antigenic epitope"
     misc_feature    2212..2370
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /note="RNA binding activity-knot of a chromodomain;
                     Region: Tudor-knot; pfam11717"
                     /db_xref="CDD:152153"
     misc_feature    2494..2496
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q4LE39.2); phosphorylation site"
     misc_feature    2521..2523
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q4LE39.2); phosphorylation site"
     misc_feature    2626..2628
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="phosphorylation site"
     misc_feature    2632..2634
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="phosphorylation site"
     misc_feature    2635..2637
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="phosphorylation site"
     misc_feature    2647..2649
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q4LE39.2); phosphorylation site"
     misc_feature    2647..2649
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="phosphorylation site"
     misc_feature    2824..2826
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="phosphorylation site"
     misc_feature    2830..2832
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q4LE39.2); phosphorylation site"
     misc_feature    2866..2868
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q4LE39.2); phosphorylation site"
     misc_feature    2875..2877
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphothreonine; propagated from
                     UniProtKB/Swiss-Prot (Q4LE39.2); phosphorylation site"
     misc_feature    2875..2877
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="phosphorylation site"
     misc_feature    2881..2883
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="phosphorylation site"
     misc_feature    3538..3540
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q4LE39.2); phosphorylation site"
     misc_feature    3574..3576
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphothreonine; propagated from
                     UniProtKB/Swiss-Prot (Q4LE39.2); phosphorylation site"
     misc_feature    3886..3909
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (Q4LE39.2);
                     Region: Antigenic epitope"
     misc_feature    3946..3948
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphothreonine; propagated from
                     UniProtKB/Swiss-Prot (Q4LE39.2); phosphorylation site"
     misc_feature    3952..3954
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q4LE39.2); phosphorylation site"
     misc_feature    3955..3957
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q4LE39.2); phosphorylation site"
     misc_feature    3961..3963
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q4LE39.2); phosphorylation site"
     misc_feature    3973..3975
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (Q4LE39.2); phosphorylation site"
     exon            505..615
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            616..681
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            682..772
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            773..852
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            853..944
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            945..1083
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            1084..1163
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            1164..1240
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            1241..1395
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            1396..1468
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            1469..1563
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            1564..1661
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            1662..1905
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            1906..2081
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            2082..2339
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            2340..2424
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            2425..2623
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            2624..3832
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     variation       2700
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:3210751"
     exon            3833..3946
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     variation       3884
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:199733289"
     exon            3947..4162
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            4163..4309
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     exon            4310..6067
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /inference="alignment:Splign:1.39.8"
     STS             5397..5584
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
                     /standard_name="D1S3341"
                     /db_xref="UniSTS:15641"
     polyA_signal    6038..6043
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
     polyA_site      6060
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
     polyA_site      6065
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
     polyA_site      6067
                     /gene="ARID4B"
                     /gene_synonym="BCAA; BRCAA1; RBBP1L1; RBP1L1; SAP180"
ORIGIN      
aaagggggggaacctagagtcggtgggggggaagcgatgtttgcccgtcagtcgagtccggagtgaggagctcggtcgccgaagcggagggagactcttgagcttcatcttgccgccgccacggccaccgcctggacctttgcccggagggagctgcagagggtccatcgccgccgtcctctggagggcagcgcgattgggggcccggacctccagtccgggggggatttttcgtcgtccccctccccccaaccagggagcccgagcggccgccaaacaaaggtaccagtcgccgccgcgggaggaggaggagccggagcctctgcctcagcagccgctggacccgccgcccttcttccccatctctcccccgggcctgctggttttgggggggagaaggagagaggggactctggacgtgccagggtcagatctcgcctccgaggaaggtgcagctgaacctggtgttttagaggataccttggtcccagagtcatcatgaaggcccttgatgagcctccctatttgacagtgggcactgatgtgagtgctaaatacagaggagccttttgtgaagccaagatcaagacagcaaaaagacttgtcaaagtcaaggtgacatttagacatgattcttcaacagtggaagttcaggatgaccacataaagggcccactaaaggtaggagctattgtggaagtgaagaatcttgatggtgcatatcaggaagctgttatcaataaactaacagatgcgagttggtacactgtagtttttgatgacggagatgagaagacactgagacgatcttcactgtgcctgaaaggagagaggcattttgctgaaagtgaaacattagaccagctcccactcaccaaccctgagcattttggcactccagtcataggaaagaaaacaaatagaggaagaagatctaatcatataccagaggaagagtcttcatcatcctccagtgatgaagatgaggatgataggaaacagattgatgagctactaggcaaagttgtatgtgtagattacattagtttggataaaaagaaagcactgtggtttcctgcattggtggtttgtcctgattgtagtgatgagattgctgtaaaaaaggacaatattcttgttcgatctttcaaagatggaaaatttacttcagttccaagaaaagatgtccatgaaattactagtgacactgcaccaaagcctgatgctgttttaaagcaagcctttgaacaggcacttgaatttcacaaaagtagaactattcctgctaactggaagactgaattgaaagaagatagctctagcagtgaagcagaggaagaagaggaggaggaagatgatgaaaaagaaaaggaggataatagcagtgaagaagaagaagaaatagaaccatttccagaagaaagggagaactttcttcagcaattgtacaaatttatggaagatagaggtacacctattaacaaacgacctgtacttggatatcgaaatttgaatctctttaagttattcagacttgtacacaaacttggaggatttgataatattgaaagtggagctgtttggaaacaagtctaccaagatcttggaatccctgtcttaaattcagctgcaggatacaatgttaaatgtgcttataaaaaatacttatatggttttgaggagtactgtagatcagccaacattgaatttcagatggcattgccagagaaagttgttaacaagcaatgtaaggagtgtgaaaatgtaaaagaaataaaagttaaggaggaaaatgaaacagagatcaaagaaataaagatggaggaggagaggaatataataccaagagaagaaaagcctattgaggatgaaattgaaagaaaagaaaatattaagccctctctgggaagtaaaaagaatttattagaatctatacctacacattctgatcaggaaaaagaagttaacattaaaaaaccagaagacaatgaaaatctggatgacaaagatgatgacacaactagggtagatgaatccctcaacataaaggtagaagctgaggaagaaaaagcaaaatctggagatgaaacgaataaagaagaagatgaagatgatgaagaagcagaagaggaggaggaggaggaagaagaagaagaggatgaagatgatgatgacaacaatgaggaagaggagtttgagtgctatccaccaggcatgaaagtccaagtgcggtatggacgagggaaaaatcaaaaaatgtatgaagctagtattaaagattctgatgtcgaaggtggagaggtcctttacttggtgcattactgcggatggaatgtgagatacgatgaatggattaaagcagataaaatagtaagacctgctgataaaaatgtgccaaagataaaacatcggaagaaaataaagaataaattagacaaagaaaaagacaaagatgaaaaatactctccaaaaaactgtaaacttcggcgcttgtccaaaccaccatttcagacaaatccatctcctgaaatggtatccaaactggatctcactgatgccaaaaactctgatactgctcatattaagtccatagaaattacttcgatccttaatggacttcaagcttctgaaagttctgctgaagacagtgagcaggaagatgagagaggtgctcaagacatggataataatggcaaagaggaatctaagattgatcatttgaccaacaacagaaatgatcttatttcaaaggaggaacagaacagttcatctttgctagaagaaaacaaagttcatgcagatttggtaatatccaaaccagtgtcaaaatctccagaaagattaaggaaagatatagaagtattatccgaagatactgattatgaagaagatgaagtcacaaaaaagagaaaggatgtcaagaaggacacaacagataaatcttcaaaaccacaaataaaacgtggtaaaagaaggtattgcaatacagaagagtgtctaaaaactggatcacctggcaaaaaggaagagaaggccaagaacaaagaatcactttgcatggaaaacagtagcaacagctcttcagatgaagatgaagaagaaacaaaagcaaagatgacaccaactaagaaatacaatggtttggaggaaaaaagaaaatctctacggacaactggtttctattcaggattttcagaagtggcagaaaaaaggattaaacttttaaataactctgatgaaagacttcaaaacagcagggccaaagatcgaaaagatgtctggtcaagtattcagggacagtggcctaaaaaaacgctgaaagagcttttttcagactctgatactgaggctgcagcttccccaccgcatcctgccccagaggagggggtggcagaggagtcactgcagactgtggctgaagaggagagttgttcacccagtgtagaactagaaaaaccacctccagtcaatgtcgatagtaaacccattgaagaaaaaacagtagaggtcaatgacagaaaagcagaatttccaagtagtggcagtaattcagtgctaaatacccctcctactacacctgaatcgccttcatcagtcactgtaacagaaggcagccggcagcagtcttctgtaacagtatcagaaccactggctccaaaccaagaagaggttcgaagtatcaagagtgaaactgatagcacaattgaggtggatagtgttgctggggagctccaagacctccagtctgaagggaatagctcgccagcaggttttgatgccagtgtgagctcaagcagtagtaatcagccagaaccagaacatcctgaaaaagcctgtacaggtcagaaaagagtgaaagatgctcagggaggaggaagttcatcaaaaaagcagaaaagaagccataaagcaacagtggtaaacaacaaaaagaagggaaaaggcacaaatagtagtgatagtgaagaactttcagctggtgaaagtataactaagagtcagccagtcaaatcagtttccactggaatgaagtctcatagtaccaaatctcccgcaaggacgcagtctccaggaaaatgtggaaagaatggtgataaggatcctgatctcaaggaacccagtaatcgattacccaaagtttacaaatggagttttcagatgtcggacctggaaaatatgacaagtgccgaacgcatcacaattcttcaagaaaaacttcaagaaatcagaaaacattatctgtcattaaaatctgaagtagcttccattgatcggaggagaaagcgtttaaagaagaaagagagagaaagtgctgctacatcctcatcctcctcttcaccttcatccagttccataacagctgctgttatgttaactttagctgaaccgtcaatgtccagcgcatcacaaaatggaatgtcagttgagtgcaggtgacagcaggacttgctaaagcactttgcacttaatggctgttgagggccactttttttttatactgcacagtggcacaaaaaaatatcagacaagcactattttatatttaaaaattgtttcttgacaagctgacttggcacttaagtgcacttttttatgaagaaaaagtacaatgaactgcttttcctcaagcaataattgtttccaacttgtctgggaattgtgtgtctggtaactggaaggccttccactgtggcaaatggaggcttttcactgcctgtagagacaatacagtaagcatagttaaggggtgggtcagaacatgttaagataacttactgtatatgtattcccttgtattttgttaaagctggaacatttgatatttttccatttatttatgaaaaaatatgaacctattttcatttgtacaaggtaattgttttttaaagcaagtcaccttagggtggctttaattgtataagtcaagcacatgtaataaattcaaaacctgcagttaacaggatattagacatcaatcctggtaaccaaatattaaagattctctttaaaaaagactgaacatgtttacaggtttgaattaggctaaaaggtcttgcagtggcttttcatggcccttcaaattggaatggaactactgtactttgccatttttctataaatcagtatttttttttaattttgatatacattgtgtgaaaaaagaaaatggctaataaactgtattaaatcttaaacaatgtataaagattgtacttagccagttcaaagtgtatatttattcataatgaattataacagttatatttttgtgttttcttgtaaatgtttcttttcccttaaatacagataattcatttgtattgcttattttattatgagctacaacaaaaggacttcaggaacaagtaatgtattagtatggttcaagattgttgataggaactgtctcaaaaggatggtggttattttaaatataaatagctaatgggggtggtaggcctataaaattaaatgccttgtataaaatccaaaatgaatgcaaaattgttttcacttgtattgactttatgttgtatgattccaatctctgttctgtttggcacttgtatttaattcttcacctttgtaagacatttgtatattgtggatgtgttcattcaagctatttaatatctggcactgttaatacacagtactttattgtacagactgttttactgttttaattgtagttctgtgtactttttttggatggggctggcatgttttctttgtttcctggcaatacgacgtgggaatttcaatgcgttttgttgtagatgctaacgtgtcagaatcctttacattcaacttttctaagaaaagcattttcagtcttgtagtgtgtgcttacagtaactaattttgttgaaaatggtttcaagttattcaaatttgtacaggactgtaaagatttgttgacagcaaaatgttgaagaaaaaagcttatagaataaaagctataaagtatatattaggatctgcaaacaatgaagaattatgtaatatattgtacaaatgtaagcaaaggctctgaaataaaatgccatagtttgtgaatccttga
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:51742 -> Molecular function: GO:0003674 [molecular_function] evidence: ND
            GeneID:51742 -> Molecular function: GO:0003677 [DNA binding] evidence: IEA
            GeneID:51742 -> Molecular function: GO:0005515 [protein binding] evidence: IPI
            GeneID:51742 -> Biological process: GO:0006349 [regulation of gene expression by genetic imprinting] evidence: IEA
            GeneID:51742 -> Biological process: GO:0006351 [transcription, DNA-dependent] evidence: IEA
            GeneID:51742 -> Biological process: GO:0006355 [regulation of transcription, DNA-dependent] evidence: IEA
            GeneID:51742 -> Biological process: GO:0008150 [biological_process] evidence: ND
            GeneID:51742 -> Biological process: GO:0034773 [histone H4-K20 trimethylation] evidence: IEA
            GeneID:51742 -> Biological process: GO:0036124 [histone H3-K9 trimethylation] evidence: IEA
            GeneID:51742 -> Cellular component: GO:0005575 [cellular_component] evidence: ND
            GeneID:51742 -> Cellular component: GO:0005634 [nucleus] evidence: IEA
            GeneID:51742 -> Cellular component: GO:0005737 [cytoplasm] evidence: IEA

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 2.1 Japan License.