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2024-03-29 15:37:09, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_014280               1765 bp    mRNA    linear   PRI 17-APR-2013
DEFINITION  Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 8 (DNAJC8),
            mRNA.
ACCESSION   NM_014280
VERSION     NM_014280.2  GI:112293276
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1765)
  AUTHORS   Andersen,J.S., Lam,Y.W., Leung,A.K., Ong,S.E., Lyon,C.E.,
            Lamond,A.I. and Mann,M.
  TITLE     Nucleolar proteome dynamics
  JOURNAL   Nature 433 (7021), 77-83 (2005)
   PUBMED   15635413
REFERENCE   2  (bases 1 to 1765)
  AUTHORS   Zhou,Z., Licklider,L.J., Gygi,S.P. and Reed,R.
  TITLE     Comprehensive proteomic analysis of the human spliceosome
  JOURNAL   Nature 419 (6903), 182-185 (2002)
   PUBMED   12226669
REFERENCE   3  (bases 1 to 1765)
  AUTHORS   Andersen,J.S., Lyon,C.E., Fox,A.H., Leung,A.K., Lam,Y.W., Steen,H.,
            Mann,M. and Lamond,A.I.
  TITLE     Directed proteomic analysis of the human nucleolus
  JOURNAL   Curr. Biol. 12 (1), 1-11 (2002)
   PUBMED   11790298
REFERENCE   4  (bases 1 to 1765)
  AUTHORS   Ohtsuka,K. and Hata,M.
  TITLE     Mammalian HSP40/DNAJ homologs: cloning of novel cDNAs and a
            proposal for their classification and nomenclature
  JOURNAL   Cell Stress Chaperones 5 (2), 98-112 (2000)
   PUBMED   11147971
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DB294321.1 and AL353354.36.
            On Apr 9, 2008 this sequence version replaced gi:7657610.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DB294321.1, AF083190.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           ERS025088 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-710               DB294321.1         1-710
            711-1765            AL353354.36        5025-6079
FEATURES             Location/Qualifiers
     source          1..1765
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="1"
                     /map="1p35.3"
     gene            1..1765
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /note="DnaJ (Hsp40) homolog, subfamily C, member 8"
                     /db_xref="GeneID:22826"
                     /db_xref="HGNC:15470"
     exon            1..111
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /inference="alignment:Splign:1.39.8"
     CDS             34..795
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /note="splicing protein spf31"
                     /codon_start=1
                     /product="dnaJ homolog subfamily C member 8"
                     /protein_id="NP_055095.2"
                     /db_xref="GI:112293277"
                     /db_xref="CCDS:CCDS41292.1"
                     /db_xref="GeneID:22826"
                     /db_xref="HGNC:15470"
                     /translation="
MAASGESGTSGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKEGKPTIVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE
"
     misc_feature    136..138
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
                     (O75937.2); phosphorylation site"
     misc_feature    202..369
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /note="DnaJ domain or J-domain.  DnaJ/Hsp40 (heat shock
                     protein 40) proteins are highly conserved and play crucial
                     roles in protein translation, folding, unfolding,
                     translocation, and degradation. They act primarily by
                     stimulating the ATPase activity of Hsp70s; Region: DnaJ;
                     cd06257"
                     /db_xref="CDD:99751"
     misc_feature    order(286..294,322..324,331..336,343..348)
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /note="HSP70 interaction site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:99751"
     misc_feature    469..471
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="N6-acetyllysine; propagated from
                     UniProtKB/Swiss-Prot (O75937.2); acetylation site"
     exon            112..213
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /inference="alignment:Splign:1.39.8"
     exon            214..270
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /inference="alignment:Splign:1.39.8"
     exon            271..337
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /inference="alignment:Splign:1.39.8"
     exon            338..432
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /inference="alignment:Splign:1.39.8"
     exon            433..504
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /inference="alignment:Splign:1.39.8"
     exon            505..596
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /inference="alignment:Splign:1.39.8"
     exon            597..672
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /inference="alignment:Splign:1.39.8"
     exon            673..1765
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /inference="alignment:Splign:1.39.8"
     variation       721
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:1049274"
     variation       900
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:8678"
     variation       1143
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:9447"
     STS             1166..1447
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /standard_name="D3S3952"
                     /db_xref="UniSTS:35447"
     variation       1218
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:11538304"
     STS             1225..1391
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /standard_name="GDB:451788"
                     /db_xref="UniSTS:157368"
     variation       1251
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:1802450"
     STS             1281..1439
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /standard_name="SHGC-74506"
                     /db_xref="UniSTS:71416"
     polyA_signal    1468..1473
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
     polyA_site      1486
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
     STS             1496..1671
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /standard_name="RH64556"
                     /db_xref="UniSTS:56337"
     variation       1543
                     /gene="DNAJC8"
                     /gene_synonym="HSPC331; SPF31"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:1049504"
ORIGIN      
gcagaagggtcacgtggtggctgggccggggaaatggcggcttcaggagagagcgggacttcaggcggcggaggcagcaccgaggaagcatttatgaccttctacagtgaggtgaaacaaatagagaagagagactcggttctaacttcgaaaaatcagattgaaagactgacccgtcctggttcctcttacttcaatttgaacccatttgaggttcttcagatagatcctgaagttacagatgaagaaataaaaaagaggtttcggcagttatccatcttggtgcatcctgacaaaaatcaagatgatgctgacagagcacaaaaggcttttgaagctgtggacaaagcttacaagttgctactggatcaggagcaaaagaagagggccctggatgtaattcaggcaggaaaagaatacgtggaacacactgtgaaagagcgaaaaaaacaattaaagaaggaaggaaaacctacaattgtagaggaggatgatcctgagctgttcaaacaagctgtatataaacagacaatgaaactctttgcagagctggaaattaaaaggaaagagagagaagccaaagagatgcatgaaaggaaacgacaaagggaagaagagattgaagctcaagaaaaagccaaacgggaaagagagtggcagaaaaactttgaggaaagtcgagatggtcgtgtggacagctggcgaaacttccaagccaatacgaaggggaagaaagagaagaaaaatcggaccttcctgagaccaccgaaagtaaaaatggagcaacgtgagtgaccgcccaaggtcacaggcacagaacctttcccctgctatctcccttcctgcttcgaaggactcattctttcctcccacttccaccccaacatagagtagtatttgctttttagtccattttgttttcaatacgatttaatatcgatcagagtaattcttttgtacattgaaatgaggggcttggtttaaaaaaagacctttccctctccctgcccctagaacaaccagtattagaaggtgccaccattggtgctgccttctcttcccacagcctgtaactcagtgttttgtacttcactgaattgtgatggttagaaacttcgtggatagtttgtggaaatcatccaattaaacatactgcttaaaacagtgttgctgtgacttcagagacaagcctggaaggggcaccttaggaagccccttcgcttcagttgctcgcttctgggtgtgctcccttcgaaggcccagataagacagggaacacttgtgagcacacagagcagcatctgatgccctgtggtgtttggcatgtgccccctgtctactgaccaatcagtgtggcatgaggcccacgccacccaaacctttcactttccaaagagctagccgtcctccacccagtaccatgtcctagcctgtctgcatttgttagtggtaatattctttatgtataataaatttttatacccaagccattgatgtacttttccttgtactctcccttgtgggtcccttgtctggcttggctgaaccccaaaatgctttggggttggacagacctggctgaaccttagtttcttcatctatgaaatgggaatatgaattactgcagcagcttttagggcagatttgccatggcatatacaaggtaactaccatagtgctccttgggtattgccaatatcctattatttctgtgtaaaatgaagatactgattgttttgaggattaaatgaagtaatatatgaaa
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:22826 -> Biological process: GO:0000398 [mRNA splicing, via spliceosome] evidence: TAS
            GeneID:22826 -> Biological process: GO:0008380 [RNA splicing] evidence: TAS
            GeneID:22826 -> Biological process: GO:0010467 [gene expression] evidence: TAS
            GeneID:22826 -> Cellular component: GO:0005654 [nucleoplasm] evidence: TAS

by @meso_cacase at DBCLS
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