2024-03-29 15:37:09, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_014280 1765 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 8 (DNAJC8), mRNA. ACCESSION NM_014280 VERSION NM_014280.2 GI:112293276 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1765) AUTHORS Andersen,J.S., Lam,Y.W., Leung,A.K., Ong,S.E., Lyon,C.E., Lamond,A.I. and Mann,M. TITLE Nucleolar proteome dynamics JOURNAL Nature 433 (7021), 77-83 (2005) PUBMED 15635413 REFERENCE 2 (bases 1 to 1765) AUTHORS Zhou,Z., Licklider,L.J., Gygi,S.P. and Reed,R. TITLE Comprehensive proteomic analysis of the human spliceosome JOURNAL Nature 419 (6903), 182-185 (2002) PUBMED 12226669 REFERENCE 3 (bases 1 to 1765) AUTHORS Andersen,J.S., Lyon,C.E., Fox,A.H., Leung,A.K., Lam,Y.W., Steen,H., Mann,M. and Lamond,A.I. TITLE Directed proteomic analysis of the human nucleolus JOURNAL Curr. Biol. 12 (1), 1-11 (2002) PUBMED 11790298 REFERENCE 4 (bases 1 to 1765) AUTHORS Ohtsuka,K. and Hata,M. TITLE Mammalian HSP40/DNAJ homologs: cloning of novel cDNAs and a proposal for their classification and nomenclature JOURNAL Cell Stress Chaperones 5 (2), 98-112 (2000) PUBMED 11147971 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from DB294321.1 and AL353354.36. On Apr 9, 2008 this sequence version replaced gi:7657610. ##Evidence-Data-START## Transcript exon combination :: DB294321.1, AF083190.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025088 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-710 DB294321.1 1-710 711-1765 AL353354.36 5025-6079 FEATURES Location/Qualifiers source 1..1765 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="1" /map="1p35.3" gene 1..1765 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /note="DnaJ (Hsp40) homolog, subfamily C, member 8" /db_xref="GeneID:22826" /db_xref="HGNC:15470" exon 1..111 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /inference="alignment:Splign:1.39.8" CDS 34..795 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /note="splicing protein spf31" /codon_start=1 /product="dnaJ homolog subfamily C member 8" /protein_id="NP_055095.2" /db_xref="GI:112293277" /db_xref="CCDS:CCDS41292.1" /db_xref="GeneID:22826" /db_xref="HGNC:15470" /translation="
MAASGESGTSGGGGSTEEAFMTFYSEVKQIEKRDSVLTSKNQIERLTRPGSSYFNLNPFEVLQIDPEVTDEEIKKRFRQLSILVHPDKNQDDADRAQKAFEAVDKAYKLLLDQEQKKRALDVIQAGKEYVEHTVKERKKQLKKEGKPTIVEEDDPELFKQAVYKQTMKLFAELEIKRKEREAKEMHERKRQREEEIEAQEKAKREREWQKNFEESRDGRVDSWRNFQANTKGKKEKKNRTFLRPPKVKMEQRE
" misc_feature 136..138 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /experiment="experimental evidence, no additional details recorded" /note="Phosphoserine; propagated from UniProtKB/Swiss-Prot (O75937.2); phosphorylation site" misc_feature 202..369 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /note="DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s; Region: DnaJ; cd06257" /db_xref="CDD:99751" misc_feature order(286..294,322..324,331..336,343..348) /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /note="HSP70 interaction site [polypeptide binding]; other site" /db_xref="CDD:99751" misc_feature 469..471 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /experiment="experimental evidence, no additional details recorded" /note="N6-acetyllysine; propagated from UniProtKB/Swiss-Prot (O75937.2); acetylation site" exon 112..213 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /inference="alignment:Splign:1.39.8" exon 214..270 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /inference="alignment:Splign:1.39.8" exon 271..337 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /inference="alignment:Splign:1.39.8" exon 338..432 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /inference="alignment:Splign:1.39.8" exon 433..504 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /inference="alignment:Splign:1.39.8" exon 505..596 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /inference="alignment:Splign:1.39.8" exon 597..672 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /inference="alignment:Splign:1.39.8" exon 673..1765 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /inference="alignment:Splign:1.39.8" variation 721 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /replace="a" /replace="c" /db_xref="dbSNP:1049274" variation 900 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /replace="c" /replace="g" /db_xref="dbSNP:8678" variation 1143 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /replace="a" /replace="g" /db_xref="dbSNP:9447" STS 1166..1447 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /standard_name="D3S3952" /db_xref="UniSTS:35447" variation 1218 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /replace="c" /replace="t" /db_xref="dbSNP:11538304" STS 1225..1391 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /standard_name="GDB:451788" /db_xref="UniSTS:157368" variation 1251 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /replace="a" /replace="t" /db_xref="dbSNP:1802450" STS 1281..1439 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /standard_name="SHGC-74506" /db_xref="UniSTS:71416" polyA_signal 1468..1473 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" polyA_site 1486 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" STS 1496..1671 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /standard_name="RH64556" /db_xref="UniSTS:56337" variation 1543 /gene="DNAJC8" /gene_synonym="HSPC331; SPF31" /replace="c" /replace="t" /db_xref="dbSNP:1049504" ORIGIN
gcagaagggtcacgtggtggctgggccggggaaatggcggcttcaggagagagcgggacttcaggcggcggaggcagcaccgaggaagcatttatgaccttctacagtgaggtgaaacaaatagagaagagagactcggttctaacttcgaaaaatcagattgaaagactgacccgtcctggttcctcttacttcaatttgaacccatttgaggttcttcagatagatcctgaagttacagatgaagaaataaaaaagaggtttcggcagttatccatcttggtgcatcctgacaaaaatcaagatgatgctgacagagcacaaaaggcttttgaagctgtggacaaagcttacaagttgctactggatcaggagcaaaagaagagggccctggatgtaattcaggcaggaaaagaatacgtggaacacactgtgaaagagcgaaaaaaacaattaaagaaggaaggaaaacctacaattgtagaggaggatgatcctgagctgttcaaacaagctgtatataaacagacaatgaaactctttgcagagctggaaattaaaaggaaagagagagaagccaaagagatgcatgaaaggaaacgacaaagggaagaagagattgaagctcaagaaaaagccaaacgggaaagagagtggcagaaaaactttgaggaaagtcgagatggtcgtgtggacagctggcgaaacttccaagccaatacgaaggggaagaaagagaagaaaaatcggaccttcctgagaccaccgaaagtaaaaatggagcaacgtgagtgaccgcccaaggtcacaggcacagaacctttcccctgctatctcccttcctgcttcgaaggactcattctttcctcccacttccaccccaacatagagtagtatttgctttttagtccattttgttttcaatacgatttaatatcgatcagagtaattcttttgtacattgaaatgaggggcttggtttaaaaaaagacctttccctctccctgcccctagaacaaccagtattagaaggtgccaccattggtgctgccttctcttcccacagcctgtaactcagtgttttgtacttcactgaattgtgatggttagaaacttcgtggatagtttgtggaaatcatccaattaaacatactgcttaaaacagtgttgctgtgacttcagagacaagcctggaaggggcaccttaggaagccccttcgcttcagttgctcgcttctgggtgtgctcccttcgaaggcccagataagacagggaacacttgtgagcacacagagcagcatctgatgccctgtggtgtttggcatgtgccccctgtctactgaccaatcagtgtggcatgaggcccacgccacccaaacctttcactttccaaagagctagccgtcctccacccagtaccatgtcctagcctgtctgcatttgttagtggtaatattctttatgtataataaatttttatacccaagccattgatgtacttttccttgtactctcccttgtgggtcccttgtctggcttggctgaaccccaaaatgctttggggttggacagacctggctgaaccttagtttcttcatctatgaaatgggaatatgaattactgcagcagcttttagggcagatttgccatggcatatacaaggtaactaccatagtgctccttgggtattgccaatatcctattatttctgtgtaaaatgaagatactgattgttttgaggattaaatgaagtaatatatgaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:22826 -> Biological process: GO:0000398 [mRNA splicing, via spliceosome] evidence: TAS GeneID:22826 -> Biological process: GO:0008380 [RNA splicing] evidence: TAS GeneID:22826 -> Biological process: GO:0010467 [gene expression] evidence: TAS GeneID:22826 -> Cellular component: GO:0005654 [nucleoplasm] evidence: TAS
by
@meso_cacase at
DBCLS
This page is licensed under a Creative Commons Attribution 2.1 Japan License.