GGRNA Home | Help | Advanced search

2024-04-26 16:20:23, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_006263               1012 bp    mRNA    linear   PRI 17-APR-2013
DEFINITION  Homo sapiens proteasome (prosome, macropain) activator subunit 1
            (PA28 alpha) (PSME1), transcript variant 1, mRNA.
ACCESSION   NM_006263
VERSION     NM_006263.2  GI:30581139
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 1012)
  AUTHORS   Longuespee,R., Boyon,C., Castellier,C., Jacquet,A., Desmons,A.,
            Kerdraon,O., Vinatier,D., Fournier,I., Day,R. and Salzet,M.
  TITLE     The C-terminal fragment of the immunoproteasome PA28S (Reg alpha)
            as an early diagnosis and tumor-relapse biomarker: evidence from
            mass spectrometry profiling
  JOURNAL   Histochem. Cell Biol. 138 (1), 141-154 (2012)
   PUBMED   22532226
  REMARK    GeneRIF: the first evidence of a novel ovarian cancer-specific
            marker
REFERENCE   2  (bases 1 to 1012)
  AUTHORS   Ruckrich,T., Kraus,M., Gogel,J., Beck,A., Ovaa,H., Verdoes,M.,
            Overkleeft,H.S., Kalbacher,H. and Driessen,C.
  TITLE     Characterization of the ubiquitin-proteasome system in
            bortezomib-adapted cells
  JOURNAL   Leukemia 23 (6), 1098-1105 (2009)
   PUBMED   19225532
  REMARK    GeneRIF: bortezomib-adapted HL-60 cells showed increased expression
            and proteasome association of the 11S proteasome activator
REFERENCE   3  (bases 1 to 1012)
  AUTHORS   Lemaire,R., Menguellet,S.A., Stauber,J., Marchaudon,V., Lucot,J.P.,
            Collinet,P., Farine,M.O., Vinatier,D., Day,R., Ducoroy,P.,
            Salzet,M. and Fournier,I.
  TITLE     Specific MALDI imaging and profiling for biomarker hunting and
            validation: fragment of the 11S proteasome activator complex, Reg
            alpha fragment, is a new potential ovary cancer biomarker
  JOURNAL   J. Proteome Res. 6 (11), 4127-4134 (2007)
   PUBMED   17939699
  REMARK    GeneRIF: the 11S proteasome activator complex, Reg alpha fragment,
            may have a role in ovarian cancer
REFERENCE   4  (bases 1 to 1012)
  AUTHORS   Kobayashi,K., Xin,Y., Ymer,S.I., Werther,G.A. and Russo,V.C.
  TITLE     Subtractive hybridisation screen identifies genes regulated by
            glucose deprivation in human neuroblastoma cells
  JOURNAL   Brain Res. 1170, 129-139 (2007)
   PUBMED   17719568
REFERENCE   5  (bases 1 to 1012)
  AUTHORS   Zhang,D., Lim,S.G. and Koay,E.S.
  TITLE     Proteomic identification of down-regulation of oncoprotein DJ-1 and
            proteasome activator subunit 1 in hepatitis B virus-infected
            well-differentiated hepatocellular carcinoma
  JOURNAL   Int. J. Oncol. 31 (3), 577-584 (2007)
   PUBMED   17671684
  REMARK    GeneRIF: DJ-1 and PA28alpha may have roles in the onset of
            hepatocarcinogenesis
REFERENCE   6  (bases 1 to 1012)
  AUTHORS   Ahn,K., Erlander,M., Leturcq,D., Peterson,P.A., Fruh,K. and Yang,Y.
  TITLE     In vivo characterization of the proteasome regulator PA28
  JOURNAL   J. Biol. Chem. 271 (30), 18237-18242 (1996)
   PUBMED   8663520
REFERENCE   7  (bases 1 to 1012)
  AUTHORS   Ahn,J.Y., Tanahashi,N., Akiyama,K., Hisamatsu,H., Noda,C.,
            Tanaka,K., Chung,C.H., Shibmara,N., Willy,P.J., Mott,J.D. et al.
  TITLE     Primary structures of two homologous subunits of PA28, a
            gamma-interferon-inducible protein activator of the 20S proteasome
  JOURNAL   FEBS Lett. 366 (1), 37-42 (1995)
   PUBMED   7789512
REFERENCE   8  (bases 1 to 1012)
  AUTHORS   Realini,C., Dubiel,W., Pratt,G., Ferrell,K. and Rechsteiner,M.
  TITLE     Molecular cloning and expression of a gamma-interferon-inducible
            activator of the multicatalytic protease
  JOURNAL   J. Biol. Chem. 269 (32), 20727-20732 (1994)
   PUBMED   8051173
REFERENCE   9  (bases 1 to 1012)
  AUTHORS   Honore,B., Leffers,H., Madsen,P. and Celis,J.E.
  TITLE     Interferon-gamma up-regulates a unique set of proteins in human
            keratinocytes. Molecular cloning and expression of the cDNA
            encoding the RGD-sequence-containing protein IGUP I-5111
  JOURNAL   Eur. J. Biochem. 218 (2), 421-430 (1993)
   PUBMED   8269930
REFERENCE   10 (bases 1 to 1012)
  AUTHORS   Rasmussen,H.H., van Damme,J., Puype,M., Gesser,B., Celis,J.E. and
            Vandekerckhove,J.
  TITLE     Microsequences of 145 proteins recorded in the two-dimensional gel
            protein database of normal human epidermal keratinocytes
  JOURNAL   Electrophoresis 13 (12), 960-969 (1992)
   PUBMED   1286667
COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
            reference sequence was derived from L07633.1, BC000352.2 and
            BU731923.1.
            On May 13, 2003 this sequence version replaced gi:5453989.
            
            Summary: The 26S proteasome is a multicatalytic proteinase complex
            with a highly ordered structure composed of 2 complexes, a 20S core
            and a 19S regulator. The 20S core is composed of 4 rings of 28
            non-identical subunits; 2 rings are composed of 7 alpha subunits
            and 2 rings are composed of 7 beta subunits. The 19S regulator is
            composed of a base, which contains 6 ATPase subunits and 2
            non-ATPase subunits, and a lid, which contains up to 10 non-ATPase
            subunits. Proteasomes are distributed throughout eukaryotic cells
            at a high concentration and cleave peptides in an
            ATP/ubiquitin-dependent process in a non-lysosomal pathway. An
            essential function of a modified proteasome, the immunoproteasome,
            is the processing of class I MHC peptides. The immunoproteasome
            contains an alternate regulator, referred to as the 11S regulator
            or PA28, that replaces the 19S regulator. Three subunits (alpha,
            beta and gamma) of the 11S regulator have been identified. This
            gene encodes the alpha subunit of the 11S regulator, one of the two
            11S subunits that is induced by gamma-interferon. Three alpha and
            three beta subunits combine to form a heterohexameric ring. Two
            transcripts encoding different isoforms have been identified.
            [provided by RefSeq, Jul 2008].
            
            Transcript Variant: This variant (1) encodes the predominant
            isoform (1).
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC000352.2, BM923141.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           ERS025081, ERS025082 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..1012
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="14"
                     /map="14q11.2"
     gene            1..1012
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /note="proteasome (prosome, macropain) activator subunit 1
                     (PA28 alpha)"
                     /db_xref="GeneID:5720"
                     /db_xref="HGNC:9568"
                     /db_xref="HPRD:02803"
                     /db_xref="MIM:600654"
     exon            1..133
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /inference="alignment:Splign:1.39.8"
     variation       21
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:371895884"
     variation       79..80
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:11432961"
     CDS             95..844
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /note="isoform 1 is encoded by transcript variant 1; 29-kD
                     MCP activator subunit; interferon-gamma-inducible protein
                     5111; activator of multicatalytic protease subunit 1; 11S
                     regulator complex alpha subunit; interferon-gamma IEF SSP
                     5111; interferon gamma up-regulated I-5111 protein;
                     proteasome activator subunit-1; proteasome activator
                     complex subunit 1; REG-alpha; IGUP I-5111; 11S regulator
                     complex subunit alpha; proteasome activator 28 subunit
                     alpha"
                     /codon_start=1
                     /product="proteasome activator complex subunit 1 isoform
                     1"
                     /protein_id="NP_006254.1"
                     /db_xref="GI:5453990"
                     /db_xref="CCDS:CCDS9612.1"
                     /db_xref="GeneID:5720"
                     /db_xref="HGNC:9568"
                     /db_xref="HPRD:02803"
                     /db_xref="MIM:600654"
                     /translation="
MAMLRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDIPVPDPVKEKEKEERKKQQEKEDKDEKKKGEDEDKGPPCGPVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRGETKGMIY
"
     misc_feature    110..301
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /note="Proteasome activator pa28 alpha subunit; Region:
                     PA28_alpha; pfam02251"
                     /db_xref="CDD:145415"
     misc_feature    392..841
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /note="Proteasome activator pa28 beta subunit; Region:
                     PA28_beta; pfam02252"
                     /db_xref="CDD:145416"
     exon            134..166
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /inference="alignment:Splign:1.39.8"
     exon            167..229
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /inference="alignment:Splign:1.39.8"
     variation       172
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372194608"
     variation       181
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:138856039"
     variation       184
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:11548693"
     variation       201
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:375851656"
     exon            230..340
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /inference="alignment:Splign:1.39.8"
     variation       242
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148923410"
     variation       243
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:117249501"
     variation       245
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:375715840"
     variation       258
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:1803830"
     variation       263
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:138520310"
     variation       310
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:373078201"
     variation       319
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:56198867"
     variation       322
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:55747210"
     variation       324
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:144096780"
     exon            341..386
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /inference="alignment:Splign:1.39.8"
     variation       349
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:147287924"
     variation       359..361
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace=""
                     /replace="aag"
                     /db_xref="dbSNP:376506250"
     variation       373
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148348414"
     exon            387..484
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /inference="alignment:Splign:1.39.8"
     variation       394..395
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:35315039"
     variation       406
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:11548692"
     variation       407
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:375628264"
     variation       409
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:201795415"
     variation       427
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:150529650"
     variation       466
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:11548694"
     variation       469
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368398253"
     variation       480
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372406157"
     variation       481
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:139533252"
     variation       482
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:375148778"
     exon            485..553
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /inference="alignment:Splign:1.39.8"
     variation       520
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:141492772"
     variation       549..552
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace=""
                     /replace="tcca"
                     /db_xref="dbSNP:372750711"
     exon            554..621
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /inference="alignment:Splign:1.39.8"
     variation       600
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:201856614"
     exon            622..676
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /inference="alignment:Splign:1.39.8"
     variation       636
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146188494"
     variation       670
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:1803828"
     variation       671
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:372754747"
     exon            677..763
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /inference="alignment:Splign:1.39.8"
     variation       686
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:144591736"
     variation       687
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:374696333"
     variation       700
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:372568481"
     variation       712
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200480712"
     variation       728
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:139362285"
     variation       734
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:199513402"
     variation       743
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:144155948"
     variation       753
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:368560988"
     exon            764..995
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /inference="alignment:Splign:1.39.8"
     variation       773
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:148664314"
     variation       785
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:14929"
     variation       825
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:14930"
     STS             837..969
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /standard_name="RH75843"
                     /db_xref="UniSTS:91113"
     variation       849
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:1803829"
     variation       862
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:1049655"
     variation       868
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369270267"
     variation       870
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:112188388"
     variation       881
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:373484066"
     variation       907
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:1803827"
     variation       925
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:762089"
     variation       965
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:1140403"
     polyA_signal    967..972
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
     variation       974
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:188982890"
     variation       993
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:368816709"
     polyA_site      995
                     /gene="PSME1"
                     /gene_synonym="IFI5111; PA28A; PA28alpha; REGalpha"
ORIGIN      
aggcggagctgggtgcgagcgccctaccgctttcgctttcccttcgcggtgcccactccactccttgtgcggcgctaggccccccgtcccggtcatggccatgctcagggtccagcccgaggcccaagccaaggtggatgtgtttcgtgaagacctctgtaccaagacagagaacctgctcgggagctatttccccaagaagatttctgagctggatgcatttttaaaggagccagctctcaatgaagccaacttgagcaatctgaaggccccattggacatcccagtgcctgatccagtcaaggagaaagagaaagaggagcggaagaaacagcaggagaaggaagacaaggatgaaaagaagaagggggaggatgaagacaaaggtcctccctgtggcccagtgaactgcaatgaaaagatcgtggtccttctgcagcgcttgaagcctgagatcaaggatgtcattgagcagctcaacctggtcaccacctggttgcagctgcagatacctcggattgaggatggtaacaattttggagtggctgtccaggagaaggtgtttgagctgatgaccagcctccacaccaagctagaaggcttccacactcaaatctctaagtatttctctgagcgtggtgatgcagtgactaaagcagccaagcagccccatgtgggtgattatcggcagctggtgcacgagctggatgaggcagagtaccgggacatccggctgatggtcatggagatccgcaatgcttatgctgtgttatatgacatcatcctgaagaacttcgagaagctcaagaagcccaggggagaaacaaagggaatgatctattgagagccctctctcccattctgtgatgagtacagcagagaccttcctgctttttactggggactccagattttccccaaacttgcttctgttgagatttttccctcaccttgcctctcaggcacaataaatatagttataccactgcccatcaaaaaaaaaaaaaaaaaa
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:5720 -> Biological process: GO:0000082 [G1/S transition of mitotic cell cycle] evidence: TAS
            GeneID:5720 -> Biological process: GO:0000209 [protein polyubiquitination] evidence: TAS
            GeneID:5720 -> Biological process: GO:0000278 [mitotic cell cycle] evidence: TAS
            GeneID:5720 -> Biological process: GO:0002474 [antigen processing and presentation of peptide antigen via MHC class I] evidence: TAS
            GeneID:5720 -> Biological process: GO:0002479 [antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent] evidence: TAS
            GeneID:5720 -> Biological process: GO:0006521 [regulation of cellular amino acid metabolic process] evidence: TAS
            GeneID:5720 -> Biological process: GO:0006915 [apoptotic process] evidence: TAS
            GeneID:5720 -> Biological process: GO:0006977 [DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest] evidence: TAS
            GeneID:5720 -> Biological process: GO:0010467 [gene expression] evidence: TAS
            GeneID:5720 -> Biological process: GO:0016032 [viral process] evidence: TAS
            GeneID:5720 -> Biological process: GO:0016070 [RNA metabolic process] evidence: TAS
            GeneID:5720 -> Biological process: GO:0016071 [mRNA metabolic process] evidence: TAS
            GeneID:5720 -> Biological process: GO:0031145 [anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process] evidence: TAS
            GeneID:5720 -> Biological process: GO:0034641 [cellular nitrogen compound metabolic process] evidence: TAS
            GeneID:5720 -> Biological process: GO:0042590 [antigen processing and presentation of exogenous peptide antigen via MHC class I] evidence: TAS
            GeneID:5720 -> Biological process: GO:0042981 [regulation of apoptotic process] evidence: TAS
            GeneID:5720 -> Biological process: GO:0043066 [negative regulation of apoptotic process] evidence: TAS
            GeneID:5720 -> Biological process: GO:0044281 [small molecule metabolic process] evidence: TAS
            GeneID:5720 -> Biological process: GO:0051436 [negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle] evidence: TAS
            GeneID:5720 -> Biological process: GO:0051437 [positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle] evidence: TAS
            GeneID:5720 -> Biological process: GO:0051439 [regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle] evidence: TAS
            GeneID:5720 -> Cellular component: GO:0000502 [proteasome complex] evidence: TAS
            GeneID:5720 -> Cellular component: GO:0005654 [nucleoplasm] evidence: TAS
            GeneID:5720 -> Cellular component: GO:0005737 [cytoplasm] evidence: TAS
            GeneID:5720 -> Cellular component: GO:0005829 [cytosol] evidence: TAS
            GeneID:5720 -> Cellular component: GO:0008537 [proteasome activator complex] evidence: IEA

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 2.1 Japan License.