2024-03-29 18:37:53, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_004370 11579 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens collagen, type XII, alpha 1 (COL12A1), transcript variant long, mRNA. ACCESSION NM_004370 VERSION NM_004370.5 GI:93141046 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 11579) AUTHORS Massoudi,D., Malecaze,F., Soler,V., Butterworth,J., Erraud,A., Fournie,P., Koch,M. and Galiacy,S.D. TITLE NC1 long and NC3 short splice variants of type XII collagen are overexpressed during corneal scarring JOURNAL Invest. Ophthalmol. Vis. Sci. 53 (11), 7246-7256 (2012) PUBMED 22969073 REMARK GeneRIF: Type XII collagen is overexpressed in permanent human and mouse corneal scars and could represent a new target to treat corneal scarring. Publication Status: Online-Only REFERENCE 2 (bases 1 to 11579) AUTHORS Agarwal,P., Zwolanek,D., Keene,D.R., Schulz,J.N., Blumbach,K., Heinegard,D., Zaucke,F., Paulsson,M., Krieg,T., Koch,M. and Eckes,B. TITLE Collagen XII and XIV, new partners of cartilage oligomeric matrix protein in the skin extracellular matrix suprastructure JOURNAL J. Biol. Chem. 287 (27), 22549-22559 (2012) PUBMED 22573329 REMARK GeneRIF: In addition to binding collagen I, COMP binds to collagens XII and XIV via their C-terminal collagenous domains. REFERENCE 3 (bases 1 to 11579) AUTHORS Posthumus,M., September,A.V., O'Cuinneagain,D., van der Merwe,W., Schwellnus,M.P. and Collins,M. TITLE The association between the COL12A1 gene and anterior cruciate ligament ruptures JOURNAL Br J Sports Med 44 (16), 1160-1165 (2010) PUBMED 19443461 REMARK GeneRIF: COL12A1 is associated with anterior cruciate ligament ruptures among females REFERENCE 4 (bases 1 to 11579) AUTHORS Liu,C.Y., Wu,M.C., Chen,F., Ter-Minassian,M., Asomaning,K., Zhai,R., Wang,Z., Su,L., Heist,R.S., Kulke,M.H., Lin,X., Liu,G. and Christiani,D.C. TITLE A Large-scale genetic association study of esophageal adenocarcinoma risk JOURNAL Carcinogenesis 31 (7), 1259-1263 (2010) PUBMED 20453000 REMARK GeneRIF: Observational study of gene-disease association. (HuGE Navigator) REFERENCE 5 (bases 1 to 11579) AUTHORS Yasuda,T., Nishio,J., Sumegi,J., Kapels,K.M., Althof,P.A., Sawyer,J.R., Reith,J.D. and Bridge,J.A. TITLE Aberrations of 6q13 mapped to the COL12A1 locus in chondromyxoid fibroma JOURNAL Mod. Pathol. 22 (11), 1499-1506 (2009) PUBMED 19648885 REMARK GeneRIF: this study identifies COL12A1 as the likely gene candidate within the recurrent 6q13 breakpoint and provides an alternative approach for detecting 6q13 anomalies in nondividing cells of chondromyxoid fibroma. REFERENCE 6 (bases 1 to 11579) AUTHORS Berthod,F., Germain,L., Guignard,R., Lethias,C., Garrone,R., Damour,O., van der Rest,M. and Auger,F.A. TITLE Differential expression of collagens XII and XIV in human skin and in reconstructed skin JOURNAL J. Invest. Dermatol. 108 (5), 737-742 (1997) PUBMED 9129225 REFERENCE 7 (bases 1 to 11579) AUTHORS Gerecke,D.R., Olson,P.F., Koch,M., Knoll,J.H., Taylor,R., Hudson,D.L., Champliaud,M.F., Olsen,B.R. and Burgeson,R.E. TITLE Complete primary structure of two splice variants of collagen XII, and assignment of alpha 1(XII) collagen (COL12A1), alpha 1(IX) collagen (COL9A1), and alpha 1(XIX) collagen (COL19A1) to human chromosome 6q12-q13 JOURNAL Genomics 41 (2), 236-242 (1997) PUBMED 9143499 REFERENCE 8 (bases 1 to 11579) AUTHORS Walchli,C., Koch,M., Chiquet,M., Odermatt,B.F. and Trueb,B. TITLE Tissue-specific expression of the fibril-associated collagens XII and XIV JOURNAL J. Cell. Sci. 107 (PT 2), 669-681 (1994) PUBMED 8207089 REFERENCE 9 (bases 1 to 11579) AUTHORS Oh,S.P., Taylor,R.W., Gerecke,D.R., Rochelle,J.M., Seldin,M.F. and Olsen,B.R. TITLE The mouse alpha 1(XII) and human alpha 1(XII)-like collagen genes are localized on mouse chromosome 9 and human chromosome 6 JOURNAL Genomics 14 (2), 225-231 (1992) PUBMED 1427837 REFERENCE 10 (bases 1 to 11579) AUTHORS Sugrue,S.P., Gordon,M.K., Seyer,J., Dublet,B., van der Rest,M. and Olsen,B.R. TITLE Immunoidentification of type XII collagen in embryonic tissues JOURNAL J. Cell Biol. 109 (2), 939-945 (1989) PUBMED 2668306 REMARK Erratum:[J Cell Biol 1989 Nov;109(5):following 2254] COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from DA661773.1, BP286308.1, AL080250.11, AL354664.12, U73778.1, AL096771.11 and AI752603.1. On Apr 21, 2006 this sequence version replaced gi:18201922. Summary: This gene encodes the alpha chain of type XII collagen, a member of the FACIT (fibril-associated collagens with interrupted triple helices) collagen family. Type XII collagen is a homotrimer found in association with type I collagen, an association that is thought to modify the interactions between collagen I fibrils and the surrounding matrix. Alternatively spliced transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]. Transcript Variant: This variant (long) represents the longer transcript and encodes the longer isoform (long). Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## Transcript exon combination :: U73778.1 [ECO:0000332] RNAseq introns :: mixed/partial sample support ERS025081, ERS025082 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-427 DA661773.1 145-571 428-867 BP286308.1 150-589 868-989 AL080250.11 7814-7935 c 990-1163 AL080250.11 6959-7132 c 1164-1454 AL080250.11 2451-2741 c 1455-2057 AL080250.11 1647-2249 c 2058-2330 AL354664.12 9642-9914 c 2331-2603 AL354664.12 6366-6638 c 2604-2876 AL354664.12 3741-4013 c 2877-4229 U73778.1 2824-4176 4230-4313 AL096771.11 20174-20257 4314-5234 U73778.1 4261-5181 5235-5629 AI752603.1 11-405 5630-5690 AL096771.11 36612-36672 5691-5830 AL096771.11 37401-37540 5831-5960 AL096771.11 37976-38105 5961-6103 AL096771.11 39316-39458 6104-6894 U73778.1 6051-6841 6895-7037 AL096771.11 47308-47450 7038-8707 U73778.1 6985-8654 8708-8739 AL096771.11 74110-74141 8740-9168 U73778.1 8687-9115 9169-9176 AL096771.11 82285-82292 9177-9347 AL096771.11 83651-83821 9348-11579 AL096771.11 84841-87072 FEATURES Location/Qualifiers source 1..11579 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="6" /map="6q12-q13" gene 1..11579 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="collagen, type XII, alpha 1" /db_xref="GeneID:1303" /db_xref="HGNC:2188" /db_xref="MIM:120320" exon 1..131 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 132..239 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" misc_feature 149..151 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="upstream in-frame stop codon" CDS 167..9358 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="long isoform precursor is encoded by transcript variant long; collagen type XII proteoglycan; collagen alpha-1(XII) chain" /codon_start=1 /product="collagen alpha-1(XII) chain long isoform precursor" /protein_id="NP_004361.3" /db_xref="GI:93141047" /db_xref="CCDS:CCDS43482.1" /db_xref="GeneID:1303" /db_xref="HGNC:2188" /db_xref="MIM:120320" /translation="
MRSRLPPALAALGAALLLSSIEAEVDPPSDLNFKIIDENTVHMSWAKPVDPIVGYRITVDPTTDGPTKEFTLSASTTETLLSELVPETEYVVTITSYDEVEESVPVIGQLTIQTGSSTKPVEKKPGKTEIQKCSVSAWTDLVFLVDGSWSVGRNNFKYILDFIAALVSAFDIGEEKTRVGVVQYSSDTRTEFNLNQYYQRDELLAAIKKIPYKGGNTMTGDAIDYLVKNTFTESAGARVGFPKVAIIITDGKSQDEVEIPARELRNVGVEVFSLGIKAADAKELKQIASTPSLNHVFNVANFDAIVDIQNEIISQVCSGVDEQLGELVSGEEVVEPPSNLIAMEVSSKYVKLNWNPSPSPVTGYKVILTPMTAGSRQHALSVGPQTTTLSVRDLSADTEYQISVSAMKGMTSSEPISIMEKTQPMKVQVECSRGVDIKADIVFLVDGSYSIGIANFVKVRAFLEVLVKSFEISPNRVQISLVQYSRDPHTEFTLKKFTKVEDIIEAINTFPYRGGSTNTGKAMTYVREKIFVPSKGSRSNVPKVMILITDGKSSDAFRDPAIKLRNSDVEIFAVGVKDAVRSELEAIASPPAETHVFTVEDFDAFQRISFELTQSICLRIEQELAAIKKKAYVPPKDLSFSEVTSYGFKTNWSPAGENVFSYHITYKEAAGDDEVTVVEPASSTSVVLSSLKPETLYLVNVTAEYEDGFSIPLAGEETTEEVKGAPRNLKVTDETTDSFKITWTQAPGRVLRYRIIYRPVAGGESREVTTPPNQRRRTLENLIPDTKYEVSVIPEYFSGPGTPLTGNAATEEVRGNPRDLRVSDPTTSTMKLSWSGAPGKVKQYLVTYTPVAGGETQEVTVRGDTTNTVLQGLKEGTQYALSVTALYASGAGDALFGEGTTLEERGSPQDLVTKDITDTSIGAYWTSAPGMVRGYRVSWKSLYDDVDTGEKNLPEDAIHTMIENLQPETKYRISVFATYSSGEGEPLTGDATTELSQDSKTLKVDEETENTMRVTWKPAPGKVVNYRVVYRPHGRGKQMVAKVPPTVTSTVLKRLQPQTTYDITVLPIYKMGEGKLRQGSGTTASRFKSPRNLKTSDPTMSSFRVTWEPAPGEVKGYKVTFHPTGDDRRLGELVVGPYDNTVVLEELRAGTTYKVNVFGMFDGGESSPLVGQEMTTLSDTTVMPILSSGMECLTRAEADIVLLVDGSWSIGRANFRTVRSFISRIVEVFDIGPKRVQIALAQYSGDPRTEWQLNAHRDKKSLLQAVANLPYKGGNTLTGMALNFIRQQNFRTQAGMRPRARKIGVLITDGKSQDDVEAPSKKLKDEGVELFAIGIKNADEVELKMIATDPDDTHAYNVADFESLSRIVDDLTINLCNSVKGPGDLEAPSNLVISERTHRSFRVSWTPPSDSVDRYKVEYYPVSGGKRQEFYVSRMETSTVLKDLKPETEYVVNVYSVVEDEYSEPLKGTEKTLPVPVVSLNIYDVGPTTMHVQWQPVGGATGYILSYKPVKDTEPTRPKEVRLGPTVNDMQLTDLVPNTEYAVTVQAVLHDLTSEPVTVREVTLPLPRPQDLKLRDVTHSTMNVFWEPVPGKVRKYIVRYKTPEEDVKEVEVDRSETSTSLKDLFSQTLYTVSVSAVHDEGESPPVTAQETTRPVPAPTNLKITEVTSEGFRGTWDHGASDVSLYRITWAPFGSSDKMETILNGDENTLVFENLNPNTIYEVSITAIYPDESESDDLIGSERTLPILTTQAPKSGPRNLQVYNATSNSLTVKWDPASGRVQKYRITYQPSTGEGNEQTTTIGGRQNSVVLQKLKPDTPYTITVSSLYPDGEGGRMTGRGKTKPLNTVRNLRVYDPSTSTLNVRWDHAEGNPRQYKLFYAPAAGGPEELVPIPGNTNYAILRNLQPDTSYTVTVVPVYTEGDGGRTSDTGRTLMRGLARNVQVYNPTPNSLDVRWDPAPGPVLQYRVVYSPVDGTRPSESIVVPGNTRMVHLERLIPDTLYSVNLVALYSDGEGNPSPAQGRTLPRSGPRNLRVFGETTNSLSVAWDHADGPVQQYRIIYSPTVGDPIDEYTTVPGRRNNVILQPLQPDTPYKITVIAVYEDGDGGHLTGNGRTVGLLPPQNIHISDEWYTRFRVSWDPSPSPVLGYKIVYKPVGSNEPMEAFVGEMTSYTLHNLNPSTTYDVNVYAQYDSGLSVPLTDQGTTLYLNVTDLKTYQIGWDTFCVKWSPHRAATSYRLKLSPADGTRGQEITVRGSETSHCFTGLSPDTDYGVTVFVQTPNLEGPGVSVKEHTTVKPTEAPTEPPTPPPPPTIPPARDVCKGAKADIVFLTDASWSIGDDNFNKVVKFIFNTVGGFDEISPAGIQVSFVQYSDEVKSEFKLNTYNDKALALGALQNIRYRGGNTRTGKALTFIKEKVLTWESGMRKNVPKVLVVVTDGRSQDEVKKAALVIQQSGFSVFVVGVADVDYNELANIASKPSERHVFIVDDFESFEKIEDNLITFVCETATSSCPLIYLDGYTSPGFKMLEAYNLTEKNFASVQGVSLESGSFPSYSAYRIQKNAFVNQPTADLHPNGLPPSYTIILLFRLLPETPSDPFAIWQITDRDYKPQVGVIADPSSKTLSFFNKDTRGEVQTVTFDTEEVKTLFYGSFHKVHIVVTSKSVKIYIDCYEIIEKDIKEAGNITTDGYEILGKLLKGERKSAAFQIQSFDIVCSPVWTSRDRCCDIPSRRDEGKCPAFPNSCTCTQDSVGPPGPPGPAGGPGAKGPRGERGISGAIGPPGPRGDIGPPGPQGPPGPQGPNGLSIPGEQGRQGMKGDAGEPGLPGRTGTPGLPGPPGPMGPPGDRGFTGKDGAMGPRGPPGPPGSPGSPGVTGPSGKPGKPGDHGRPGPSGLKGEKGDRGDIASQNMMRAVARQVCEQLISGQMNRFNQMLNQIPNDYQSSRNQPGPPGPPGPPGSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSSGPRGLPGPPGPQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQGYPGSG
" sig_peptide 167..235 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="COORDINATES: ab initio prediction:SignalP:4.0" mat_peptide 236..9355 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /product="collagen alpha-1(XII) chain long isoform" misc_feature 581..1072 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different...; Region: vWA_collagen_alphaI-XII-like; cd01482" /db_xref="CDD:29255" misc_feature order(602..604,608..610,614..616,815..817,914..916) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:29255" misc_feature order(608..616,620..622,815..817) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="integrin-collagen binding site; other site" /db_xref="CDD:29255" misc_feature 1181..1426 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(1352..1354,1397..1399) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(1400..1405,1409..1414) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 1481..1972 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different...; Region: vWA_collagen_alphaI-XII-like; cd01482" /db_xref="CDD:29255" misc_feature order(1502..1504,1508..1510,1514..1516,1715..1717, 1814..1816) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:29255" misc_feature order(1508..1516,1520..1522,1715..1717) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="integrin-collagen binding site; other site" /db_xref="CDD:29255" misc_feature 2066..2323 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(2243..2245,2288..2290) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(2291..2296,2300..2305) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 2336..2581 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(2516..2518,2561..2563) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(2564..2569,2573..2578) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 2609..2845 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature 2750..2758 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q99715.2); Region: Cell attachment site (Potential)" misc_feature order(2789..2791,2834..2836) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature 2837..2842 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 2882..3130 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(3065..3067,3110..3112) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(3113..3118,3122..3127) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 3164..3391 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(3335..3337,3380..3382) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature 3383..3388 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 3434..3694 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(3611..3613,3656..3658) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(3659..3664,3668..3673) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 3758..4249 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different...; Region: vWA_collagen_alphaI-XII-like; cd01482" /db_xref="CDD:29255" misc_feature order(3779..3781,3785..3787,3791..3793,3992..3994, 4091..4093) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:29255" misc_feature order(3785..3793,3797..3799,3992..3994) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="integrin-collagen binding site; other site" /db_xref="CDD:29255" misc_feature 4322..4576 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(4502..4504,4547..4549) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(4550..4555,4559..4564) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 4586..4855 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(4586..4588,4775..4777,4820..4822) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(4823..4828,4832..4837) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 4865..5122 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(5042..5044,5087..5089) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(5090..5095,5099..5104) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 5132..5350 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature 5426..5662 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(5609..5611,5654..5656) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature 5657..5662 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 5705..>5884 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:200951" misc_feature 5978..6220 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(6152..6154,6197..6199) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(6200..6205,6209..6214) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 6242..6478 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(6425..6427,6470..6472) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature 6473..6478 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 6518..6757 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(6692..6694,6737..6739) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(6740..6745,6749..6754) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 6782..7039 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:28945" misc_feature order(6956..6958,7001..7003) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Interdomain contacts; other site" /db_xref="CDD:28945" misc_feature order(7004..7009,7013..7018) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Cytokine receptor motif; other site" /db_xref="CDD:28945" misc_feature 7130..7624 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different...; Region: vWA_collagen_alphaI-XII-like; cd01482" /db_xref="CDD:29255" misc_feature order(7151..7153,7157..7159,7163..7165,7367..7369, 7466..7468) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:29255" misc_feature order(7157..7165,7169..7171,7367..7369) /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="integrin-collagen binding site; other site" /db_xref="CDD:29255" misc_feature 7517..8404 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q99715.2); Region: Nonhelical region (NC3)" misc_feature 7724..8302 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /note="Thrombospondin N-terminal -like domains; Region: TSPN; smart00210" /db_xref="CDD:128506" misc_feature 8405..8860 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q99715.2); Region: Triple-helical region (COL2) with 1 imperfection" misc_feature 8501..8509 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q99715.2); Region: Cell attachment site (Potential)" misc_feature 8849..8857 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q99715.2); Region: Cell attachment site (Potential)" misc_feature 8861..8989 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q99715.2); Region: Nonhelical region (NC2)" misc_feature 8990..9298 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q99715.2); Region: Triple-helical region (COL1) with 2 imperfections" misc_feature 9299..9355 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q99715.2); Region: Nonhelical region (NC1)" exon 240..356 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 357..500 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 501..560 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 561..824 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 825..989 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 990..1163 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 1164..1454 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 1455..2057 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 1547 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="c" /replace="g" /db_xref="dbSNP:34730529" variation 1717 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="a" /replace="g" /db_xref="dbSNP:34767467" exon 2058..2330 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 2331..2603 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 2604..2876 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 2647 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="a" /replace="g" /db_xref="dbSNP:35170847" exon 2877..3149 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 2938 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="c" /replace="t" /db_xref="dbSNP:35429515" exon 3150..3416 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 3417..3609 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 3610..3731 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 3732..3881 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 3882..4001 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 4002..4166 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 4167..4313 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 4314..4453 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 4411 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="c" /replace="t" /db_xref="dbSNP:34830422" exon 4454..4583 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 4584..4726 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 4727..4856 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 4857..4993 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 4994..5123 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 5124..5263 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 5264..5396 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 5379 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="c" /replace="t" /db_xref="dbSNP:240736" exon 5397..5417 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 5418..5560 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 5561..5690 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 5691..5830 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 5831..5960 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 5961..6103 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 6104..6233 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 6228 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="a" /replace="g" /db_xref="dbSNP:34438461" exon 6234..6376 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 6240 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="a" /replace="c" /replace="g" /db_xref="dbSNP:34336755" variation 6364 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="a" /replace="c" /db_xref="dbSNP:34619869" exon 6377..6506 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 6507..6626 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 6610 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="a" /replace="t" /db_xref="dbSNP:36002196" exon 6627..6773 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 6645 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="a" /replace="t" /db_xref="dbSNP:35523808" exon 6774..6890 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 6891..7037 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 7038..7112 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 7113..7252 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 7253..7376 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 7377..7520 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 7465 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="g" /replace="t" /db_xref="dbSNP:35551395" exon 7521..7685 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 7686..7724 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 7725..7863 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 7864..8006 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 7952 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="a" /replace="g" /db_xref="dbSNP:35710072" exon 8007..8116 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 8117..8266 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 8267..8344 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 8345..8431 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 8403 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="c" /replace="t" /db_xref="dbSNP:34369939" exon 8432..8485 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 8486..8581 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 8582..8635 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 8636..8689 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 8690..8743 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 8744..8815 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 8816..8851 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 8852..8918 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 8919..9107 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" exon 9108..9176 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 9146 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="c" /replace="t" /db_xref="dbSNP:34846477" exon 9177..9347 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" variation 9328 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="c" /replace="t" /db_xref="dbSNP:35292916" variation 9338 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="a" /replace="g" /db_xref="dbSNP:970547" exon 9348..11579 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /inference="alignment:Splign:1.39.8" STS 9353..9572 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /standard_name="STS-U73778" /db_xref="UniSTS:53183" polyA_signal 9743..9748 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" polyA_site 9766 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" variation 10479 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /replace="g" /replace="t" /db_xref="dbSNP:202087198" STS 11360..11558 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /standard_name="STS-W72891" /db_xref="UniSTS:69267" STS 11360..11520 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /standard_name="RH47329" /db_xref="UniSTS:14917" STS 11435..11564 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" /standard_name="SHGC-33702" /db_xref="UniSTS:82841" polyA_signal 11558..11563 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" polyA_site 11579 /gene="COL12A1" /gene_synonym="BA209D8.1; COL12A1L; DJ234P15.1" ORIGIN
gcggccgccaggtgctcctggagtgcagcgcctatcgccggggcgtgtgggggccacaccgagcaccagcttctccgacgccgggaagccgctgtcgccgccgctacctctccctgttgccgccgcctcagatctcttcatgccgctgtaagctcggaggccaaggatgcggagtaggcttcccccagcgcttgccgccctgggcgcggccctgctcctgtcttccattgaggcagaagttgacccaccttcagacttgaattttaaaattatagatgaaaatactgttcatatgtcatgggcaaaaccagttgatccaattgtgggttacagaataacggtggaccctacaacggatgggcctactaaagaatttaccctttcagctagtaccactgaaactttattgtcagaacttgtacctgaaacagagtatgtggtgacaataacttcatatgatgaagtagaagaaagtgtaccagttataggacaactaacaattcaaacaggtagttcgacaaagccagtggagaagaaacctggaaaaaccgagatacaaaaatgctctgtcagtgcctggactgatttggttttcctcgtggatggctcttggagtgtgggaagaaataatttcaagtacattttagacttcattgctgctcttgtgtctgcttttgacattggggaagagaagacaagagttggagttgttcaatacagctctgataccaggactgaatttaacttaaatcagtactaccaaagggatgaacttcttgctgcaataaaaaaaattccatataaaggtggcaacacaatgacaggggatgccattgattatttagttaaaaatactttcacggaatctgctggggcaagagttggctttcctaaagtggcaattattattacggatggaaaatcccaggatgaagtggaaattccagcaagagagcttcgtaatgttggagttgaagttttctccttgggcattaaagctgcagatgcaaaagaactcaaacaaattgcctccacaccttcactgaaccatgttttcaatgtggccaactttgatgcaattgtggatattcagaatgagatcatctcccaggtgtgctcaggtgttgatgaacaacttggtgaattggttagtggagaagaagttgttgagcctccttcaaatttgattgccatggaagtctcttcaaaatatgttaagctaaattggaatccatctcctagtccagtgactggctacaaagtcatcctcacaccaatgactgcaggaagccgacagcacgctctgagtgtggggcctcagacaaccacgctcagtgttcgcgacctctcagcagacacagaataccagatcagtgtttccgccatgaagggaatgacatccagtgaacccatttcaataatggagaagactcagccaatgaaagttcaagtggaatgctcacgtggtgtggatataaaagccgatattgtgtttttggttgatggctcctatagcattgggattgcaaactttgttaaagttagagcctttttggaagttcttgtaaaaagttttgaaatttcaccaaatagggtccagattagtcttgtgcaatacagccgggatcctcatactgagttcactttgaaaaaattcaccaaagttgaagatataattgaagcaataaacaccttcccttacagaggaggatctacaaatactggcaaagcaatgacttatgtcagagagaaaatatttgtgcctagcaagggatcaagaagcaatgtgccaaaggtcatgattcttatcacggatgggaaatcatcagatgctttcagagatcctgcgataaaactgaggaattcagatgttgaaatctttgcagttggtgtgaaggatgccgttcgctcagaattggaagctattgcctctcctcctgcagagacccatgtgttcacagtggaagattttgatgcttttcagaggatatcttttgaactcacacagtctatctgccttagaattgagcaagaattggcagctataaagaagaaagcttacgtccctccaaaggatcttagtttttcagaagtgacttcttatggtttcaaaaccaactggtctccagctggagaaaatgttttttcatatcacatcacctacaaggaagcggctggggatgatgaggtcactgtggtggagccagcatcgagcaccagtgttgttctcagcagcctgaagccagagaccttgtatttggtcaatgtgactgcggagtatgaggatggcttcagcattcccttagctggagaggagaccaccgaagaagtaaaaggagcacctcgaaacctaaaggtgacagatgagactacagatagtttcaaaattacttggactcaagctccagggagagttttaagatatcgaattatatatagaccagttgctggtggagagagcagagaagttaccaccccacccaatcagaggaggagaacactggagaacttgattccagacacgaaatatgaagtatctgtaattcctgaatatttctcaggacctggtactccattaactggaaatgcagccactgaagaagttagagggaatccaagagacttaagagtttctgaccctacgacgtctactatgaaattatcttggagtggggcaccaggaaaagtgaaacagtatctcgtcacatataccccagtggcagggggtgaaactcaagaggtcactgtgaggggagatacaaccaatacggtgctgcagggattgaaggaagggacacaatacgccttatctgtgacagccttgtatgcgtctggggctggagacgccctctttggtgaaggaacaacacttgaagaacgtggttctcctcaagatttagttactaaagacatcactgacacatcaattggggcttattggacatctgctccaggaatggttcgcggttacagggtctcatggaaatcactttatgatgatgttgacactggagagaaaaatctgcctgaagatgcaattcatacgatgatagaaaatctgcagccagagaccaaatacagaatttcagtatttgccacttacagcagtggagaaggagaacctttgactggagatgccacaactgaattatctcaagattccaaaaccctgaaagtagatgaagaaacagaaaacacaatgagagttacatggaaaccagcaccagggaaagtcgtcaactaccgtgttgtctatcgccctcatgggagagggaagcaaatggttgctaaggtgccccccacagtcacttcgacagtgttaaagcgacttcagccacagaccacatatgacatcacagttcttcctatttacaagatgggagaaggaaagcttaggcaaggatcaggaacaacagcttctcggtttaagtctcctagaaacctcaaaacatctgacccaaccatgtcaagcttccgagtgacttgggagcctgcccctggggaagtgaagggttataaagtcacattccaccctacgggggatgacagaagactgggggagttagtggttggaccctatgacaacacagttgttttggaggaacttagggctggtaccacctataaagtaaatgtttttggaatgtttgatggaggagaaagctcaccacttgttggacaagaaatgacaaccctttccgacacaactgttatgccaattttatcttctgggatggagtgtctcaccagagctgaggcagacattgtgttgctggtggatggatcatggagcatcggccgggcaaattttagaaccgtgaggagtttcatttctcgtattgtggaagtctttgacattggccccaaaagagtacaaattgctcttgctcagtatagtggggatcccagaacagagtggcagttaaatgcacacagagacaagaagagcttgttgcaagctgtggcaaacttgccgtacaaaggaggcaatactctcacaggcatggctttgaatttcattcgccaacagaacttcaggacccaagctggcatgagacctcgagctcgaaaaattggtgtgctcattactgatggaaaatcacaagacgatgttgaagcaccttcaaagaaactcaaggatgagggagtggagctgtttgctattggtattaaaaatgctgatgaagtcgaattaaagatgattgcaactgatcctgatgatacccatgcatacaatgtggcagattttgagtcactctccaggatagtggatgatctcaccattaatttgtgtaacagtgtcaaaggtccaggtgatttggaagcaccttctaacttagttatttctgagcgaacccatcgttcttttagagtgagctggacaccaccttctgacagtgtggatcgatataaggtggaatactatccagtttctggagggaaacgtcaagaattttatgtgagtcgaatggaaactagcacagtgctgaaagatctgaaacctgaaactgaatatgttgtcaatgtgtattctgtggtagaagatgaatatagtgagcctctgaaggggacagaaaaaaccttgccagtgcctgtagtcagcctgaatatttatgatgttggccctaccaccatgcatgtgcagtggcagcctgtgggaggagctactggctacatcttgtcatacaaacctgttaaggacacagagccaacaagacccaaagaggtgcgtttggggccaacagtgaatgacatgcagctgactgaccttgttcccaacacggagtatgcagtcacagtccaggctgtcctgcacgacctcactagtgaacctgtcactgttcgggaagtcaccttgcctttacccagacctcaggatctgaaactcagagatgtgactcacagcactatgaatgtcttttgggaacctgtgcctggaaaagtgcgtaaatatattgttcgatacaaaacaccagaagaggatgtcaaagaggtagaggtggacagatcagagaccagcacttccctcaaagacctcttctcacagaccttgtacacagtcagcgtttctgcagtacatgacgagggggagtctcctccagtgactgctcaagaaactacccgacccgtgccagccccaacaaacttaaagattactgaagtaacatcagagggtttcagagggacttgggatcatggagcttcagatgtgtctctctacagaataacttgggcaccttttggaagctcagataagatggagaccatcttaaatggagatgaaaacactttggtgttcgaaaacctgaaccccaacaccatctatgaagtttccattactgccatctatcctgatgagtcagaaagtgatgacctgattggcagtgagcgcacactgcctatcttaacaacacaagctcccaaaagtggcccacgaaaccttcaagtgtacaatgcaacatctaacagcctgactgttaagtgggatcctgctagtggtcgtgtgcagaaatataggatcacttatcagccttccacaggggaaggcaatgagcaaacgaccacaataggaggacggcagaacagtgtggtcctgcagaaactgaagccagacactccttacactatcaccgtatcctctctgtatcctgatggtgaaggaggtcggatgacgggaagaggcaagaccaaacctctaaacactgtaaggaacctgagagtgtatgacccttctaccagcaccttgaatgtccgctgggaccatgcagagggaaatcctcgtcagtacaagctcttctatgcaccagcagcaggtggtccagaggaactggtaccaatccccgggaataccaattatgccattcttaggaatctgcagccagatacctcatacactgtgactgtagttcccgtttatactgaaggtgatgggggacgcacatcagatactggaaggacattgatgagaggactggcaagaaatgtccaagtatacaatcctacacctaacagcctcgatgttcgctgggaccctgctccaggacctgtgctgcaatatcgcgttgtgtattctcctgtggatggcacaagaccctcagaatctatagtagtgccaggaaacacgcgcatggtgcatctggagcggctgattccggacacactctattccgtgaaccttgtggctctgtactcggatggagagggaaatcccagccctgcccagggccgaacgctaccacgcagtggaccaaggaacctgagagtctttggtgaaacaaccaatagcctctcggtagcctgggatcatgctgatgggccagttcagcagtacaggatcatctattctcccactgttggtgatccaattgatgaatataccacagtcccaggcagaagaaacaatgtaatactgcagcccctgcaacctgacactccatataaaattactgttattgctgtttatgaagatggagatggtggccatctaacaggaaatggaagaactgtgggactccttcctcctcagaacatacacatctctgacgaatggtatacaagattcagggtgtcctgggatccttcaccttctccagttcttggatataaaatagtatataagccagtgggttccaatgagcccatggaagcctttgttggagaaatgacatcatataccttacacaatctcaatcccagcaccacctacgatgtgaatgtttatgctcaatatgattctggactcagtgtccccttgacagatcaaggcactacattatatttaaatgtaacagatctgaaaacttaccagattgggtgggatacattctgtgtcaaatggtcacctcaccgggcagccacctcctacaggctaaaactaagccctgcagatggaacaaggggacaagaaattacagtgcgtggatcagaaaccagtcactgcttcactggcctttcaccagacactgattatggtgtcactgtttttgtgcagacaccaaatctcgagggaccaggagtctctgttaaagaacataccactgtgaaaccaacagaagcccctacagagccacccacacctcctccccctcccaccattccaccagcccgggatgtatgcaaaggggccaaggcagatattgtgttcttgactgatgcctcctggagcattggggacgataattttaacaaagttgtaaaattcatcttcaatactgtgggaggctttgatgaaatcagtcctgctgggattcaggtttcatttgtgcaatacagcgatgaggtcaagtctgagttcaagctgaacacgtacaatgacaaggccctagcccttggggccctccagaatattaggtacagaggaggaaacacaagaacaggcaaggccctcacgtttatcaaggagaaagtcttgacttgggagagcggcatgaggaagaatgtccctaaggtgttggttgtggtcacggacggtcggtcccaggatgaggtcaagaaggcggctttggtcatccagcagtcagggttcagtgtctttgtagttggtgtggctgatgtcgactacaatgagcttgccaacattgccagcaaaccaagtgaacggcacgtgttcattgtggacgactttgaatcttttgagaagatcgaagacaatcttattacatttgtttgtgaaactgccacttcaagttgtcctctcatttatttggatggctacacctcaccaggttttaaaatgcttgaagcatacaacctgacagaaaagaattttgcttctgtacaaggagtatctttggagtcagggtctttccccagctactcagcatacaggattcagaagaatgcgtttgtgaatcagcctacagcagacctacacccaaatggactccctccttcatacacgattatattattattcagacttctcccagaaactcccagtgacccttttgcaatttggcaaatcacagacagagactacaaaccacaagttggagtgattgcagatccttctagcaagacgttatcattctttaacaaggatacaagaggcgaggtgcaaactgttacatttgacacagaagaagtaaagacattattttatggaagttttcacaaggttcatattgtagtgacctcaaaaagtgttaagatttacattgactgctatgaaattatagaaaaagacatcaaggaagctggaaatataacaactgatggttatgaaattcttggaaaactccttaaaggggaaaggaaatcagccgcattccaaatccagagttttgacattgtctgcagtccagtgtggaccagtagagacagatgctgtgatattccctctaggagagatgagggaaaatgccctgcttttccaaattcttgcacatgtacacaggacagcgttggacctccaggacctccaggccctgcaggaggacctggtgctaaaggtcccagaggtgaaagaggtatcagtggggcaattgggccccctggtcctcgtggagacataggtcctccaggcccccagggtcctccaggccctcagggacccaatggactctctattccgggagagcaaggtcgccaagggatgaaaggtgatgctggagagccaggacttccaggccgaacaggaaccccaggattacctggcccaccaggaccaatgggacctccaggagacagaggcttcactggaaaagacggtgcaatgggacccaggggcccaccagggccgccgggaagcccaggctccccaggagtcacaggaccaagtgggaagccaggaaaacctggagatcatggcagaccaggtccatctgggttgaaaggagaaaaaggtgataggggagacattgcttcccagaacatgatgcgagcagttgcaagacaagtctgtgaacaattgataagtggtcagatgaacagattcaatcagatgctgaatcagattccaaatgattaccagtccagtcgcaaccagccaggcccgccgggtccaccgggacctcctggtagcgcaggagccagaggagaacctgggcctggggggcggccaggcttcccgggcacaccagggatgcagggaccccctggggaacgaggtttgccaggagagaaaggtgaaaggggtactggatcttcaggacctcgggggctgcctggccccccaggtccacaaggagaatccagaacaggtccaccagggtccacaggttcaagaggtccccctggcccccctggccgtcctggaaactcaggtatccgaggacccccaggtcctcctggatactgtgattcttctcagtgtgccagcatcccatacaacgggcaaggctatccaggttccggctaacacattttctaagtcgccagtgctgcttacagtttgaatacatgaaaatcctgtttctgagatgtttgcgcacgtgcttattaggaaatgagtctgtatggaaatctcaccacagataatggttaacgaaccgggtcgacatcacaaaggagggtggagactctttttactaacttgaatgagacaaaagcagtggtgtcagtttataatcctgatgcatttcagtaataatgtagaaaaacattattttaaaaaagttccaacacacagccatgaggagcctcagttttgaaagaggtgcataataaaactactaaccagaggagtctatgccattttaagaaaaacaattaacctggttaaagagaaatgtcttatgtaaataataaactaattgtggcttgtaaatgatttgtatgtgatcctgtcgactaaaatcacttaacaattctacaataagcttctgcatcaaagcctgccgcttgctctatgccggaataacaccaaatggaatctcctcatctcttgcttgttagcgatgtgtctgattcagggcatctgtctttttgttacttttttgtccgtgtcctctcatttgggttttgtaactgcaattttcaaaccaaagtttaaaatcaccttttcttcctgttttgctgtagtcactggtgttcctcacccaccagctgtaactcagtttgtgtgaggtacagccacagaagatgtcatgtactgtatattacctggtgatagttgcttttcaccccccgagttcagtttctaggagccaatgaaacttcccctcacctcctcatctttccaagttgttctttgaattgaggagtttgaaggcataaacagttacttggggatttgcgaaaatcctacttagttactgcgtttacagttctttggcccagtctctgacccttcccaagtatttgtgcaatgattgtgtttactgctggatttttgaaggtttttttttttaagaaagtgccatttcattatttgattatcaccaaattatctggaaataattgggacattgtaacttatctatttatagttatgagattaagactggagtgccatcaccgcgggtgatgatttagcttttgctgtgtgtgtgtgtgtgtgccttccaaatcatgccataattgtaatgttgaatcggacagagccttacgtgcccgagggcggggcctacctgcctgagcgcgagcccttcatcgtgccggtggagcccgagcggacagcggaatacgaggactacggcgcagacgagcctgcagaggagcctcctgagccccaccggcgctggcggcgcgccctgccccacggacccgggcagtgaaccagagatcacgcgccgcgccgcgaggcttgggggaggtgttgaaattctcatttacaggtcagatagagcagtgtacgtcttttctgaggtgtttcttccagcgttgctcatccaggagtaccctttctgattgtagagaaccttgtttctgcaggaagcctagctccaagcacgcagtctgtagacatttttgcctttgcccttgaaatgcttgcaaaatactttgttaacaaaagctgcaaagagagaacatgccgtgtgcctttagttagcacagcgggcagcctcagtgaaactcttaggttaagcagttaagtcctggaacccagagctgctgtgtatttcgagcgggcagtttatcttttgctatacttattttcaattcaattacaccacgattcaaataattcccctcctaaaaccaaaaaggagggaaacgtcaactccattgcaattacttatcttcctcttctatctctgttatacgccggggcatagaatgctcgtatacatctctttaacaaccacaaaccttaagccatgtagatgaagttagtgcatcaacgggatacagttccatattgccttaaacctccttgttttagacacactaacatttataccaaattgcagattattctgcagagagggaattgcatgtttgtgttgtatatttagtatgaacttttttcagaatataatatttcttagttatcaaaagtagttggaaaacatttgcaagactatgaacatagaattgctgcttttatattttaactgcagattgtgaatttcactgccttatattatttatttctgaaacaaaagaggcatttttcaataaaactactgaaaatttga
//
ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:1303 -> Molecular function: GO:0030020 [extracellular matrix structural constituent conferring tensile strength] evidence: NAS GeneID:1303 -> Biological process: GO:0001501 [skeletal system development] evidence: TAS GeneID:1303 -> Biological process: GO:0007155 [cell adhesion] evidence: IEA GeneID:1303 -> Biological process: GO:0022617 [extracellular matrix disassembly] evidence: TAS GeneID:1303 -> Biological process: GO:0030198 [extracellular matrix organization] evidence: TAS GeneID:1303 -> Biological process: GO:0030199 [collagen fibril organization] evidence: NAS GeneID:1303 -> Biological process: GO:0030574 [collagen catabolic process] evidence: TAS GeneID:1303 -> Cellular component: GO:0005576 [extracellular region] evidence: TAS GeneID:1303 -> Cellular component: GO:0005595 [collagen type XII] evidence: NAS GeneID:1303 -> Cellular component: GO:0005615 [extracellular space] evidence: IDA GeneID:1303 -> Cellular component: GO:0005788 [endoplasmic reticulum lumen] evidence: TAS GeneID:1303 -> Cellular component: GO:0031012 [extracellular matrix] evidence: IDA GeneID:1303 -> Cellular component: GO:0070062 [extracellular vesicular exosome] evidence: IDA
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