2024-04-26 21:32:28, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001856 5584 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens collagen, type XVI, alpha 1 (COL16A1), mRNA. ACCESSION NM_001856 VERSION NM_001856.3 GI:100913219 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5584) AUTHORS Knaup,J., Verwanger,T., Gruber,C., Ziegler,V., Bauer,J.W. and Krammer,B. TITLE Epidermolysis bullosa - a group of skin diseases with different causes but commonalities in gene expression JOURNAL Exp. Dermatol. 21 (7), 526-530 (2012) PUBMED 22716248 REMARK GeneRIF: Gene expression profiles showed that COL16A1 was up-regulated in epidermolysis bullosa subtypes. REFERENCE 2 (bases 1 to 5584) AUTHORS Ratzinger,S., Grassel,S., Dowejko,A., Reichert,T.E. and Bauer,R.J. TITLE Induction of type XVI collagen expression facilitates proliferation of oral cancer cells JOURNAL Matrix Biol. 30 (2), 118-125 (2011) PUBMED 21251976 REMARK GeneRIF: Overexpression of type XVI collagen in aberrant oral keratinocytes leads to Kindlin-1 induction, increased Kindlin-1/beta1-integrin interaction, integrin activation and subsequently to a proliferative cellular phenotype. REFERENCE 3 (bases 1 to 5584) AUTHORS Bailey,S.D., Xie,C., Do,R., Montpetit,A., Diaz,R., Mohan,V., Keavney,B., Yusuf,S., Gerstein,H.C., Engert,J.C. and Anand,S. CONSRTM DREAM investigators TITLE Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study JOURNAL Diabetes Care 33 (10), 2250-2253 (2010) PUBMED 20628086 REMARK GeneRIF: Observational study of gene-disease association, gene-environment interaction, and pharmacogenomic / toxicogenomic. (HuGE Navigator) REFERENCE 4 (bases 1 to 5584) AUTHORS Ratzinger,S., Eble,J.A., Pasoldt,A., Opolka,A., Rogler,G., Grifka,J. and Grassel,S. TITLE Collagen XVI induces formation of focal contacts on intestinal myofibroblasts isolated from the normal and inflamed intestinal tract JOURNAL Matrix Biol. 29 (3), 177-193 (2010) PUBMED 19931388 REMARK GeneRIF: Collagen XVI promotes persistence of intestinal subepithelial myofibroblasts in the normal and in the inflamed bowel wall by stabilizing focal adhesion contacts. REFERENCE 5 (bases 1 to 5584) AUTHORS Talmud,P.J., Drenos,F., Shah,S., Shah,T., Palmen,J., Verzilli,C., Gaunt,T.R., Pallas,J., Lovering,R., Li,K., Casas,J.P., Sofat,R., Kumari,M., Rodriguez,S., Johnson,T., Newhouse,S.J., Dominiczak,A., Samani,N.J., Caulfield,M., Sever,P., Stanton,A., Shields,D.C., Padmanabhan,S., Melander,O., Hastie,C., Delles,C., Ebrahim,S., Marmot,M.G., Smith,G.D., Lawlor,D.A., Munroe,P.B., Day,I.N., Kivimaki,M., Whittaker,J., Humphries,S.E. and Hingorani,A.D. CONSRTM ASCOT investigators; NORDIL investigators; BRIGHT Consortium TITLE Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip JOURNAL Am. J. Hum. Genet. 85 (5), 628-642 (2009) PUBMED 19913121 REMARK GeneRIF: Observational study of gene-disease association. (HuGE Navigator) REFERENCE 6 (bases 1 to 5584) AUTHORS Grassel,S., Timpl,R., Tan,E.M. and Chu,M.L. TITLE Biosynthesis and processing of type XVI collagen in human fibroblasts and smooth muscle cells JOURNAL Eur. J. Biochem. 242 (3), 576-584 (1996) PUBMED 9022684 REFERENCE 7 (bases 1 to 5584) AUTHORS Tillet,E., Mann,K., Nischt,R., Pan,T.C., Chu,M.L. and Timpl,R. TITLE Recombinant analysis of human alpha 1 (XVI) collagen. Evidence for processing of the N-terminal globular domain JOURNAL Eur. J. Biochem. 228 (1), 160-168 (1995) PUBMED 7882999 REFERENCE 8 (bases 1 to 5584) AUTHORS Sires,U.I., Dublet,B., Aubert-Foucher,E., van der Rest,M. and Welgus,H.G. TITLE Degradation of the COL1 domain of type XIV collagen by 92-kDa gelatinase JOURNAL J. Biol. Chem. 270 (3), 1062-1067 (1995) PUBMED 7836360 REFERENCE 9 (bases 1 to 5584) AUTHORS Yamaguchi,N., Kimura,S., McBride,O.W., Hori,H., Yamada,Y., Kanamori,T., Yamakoshi,H. and Nagai,Y. TITLE Molecular cloning and partial characterization of a novel collagen chain, alpha 1(XVI), consisting of repetitive collagenous domains and cysteine-containing non-collagenous segments JOURNAL J. Biochem. 112 (6), 856-863 (1992) PUBMED 1284248 REFERENCE 10 (bases 1 to 5584) AUTHORS Pan,T.C., Zhang,R.Z., Mattei,M.G., Timpl,R. and Chu,M.L. TITLE Cloning and chromosomal location of human alpha 1(XVI) collagen JOURNAL Proc. Natl. Acad. Sci. U.S.A. 89 (14), 6565-6569 (1992) PUBMED 1631157 COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence was derived from BC064839.1, AC114488.3, M92642.1 and S57132.1. On May 25, 2006 this sequence version replaced gi:18641351. Summary: This gene encodes the alpha chain of type XVI collagen, a member of the FACIT collagen family (fibril-associated collagens with interrupted helices). Members of this collagen family are found in association with fibril-forming collagens such as type I and II, and serve to maintain the integrity of the extracellular matrix. High levels of type XVI collagen have been found in fibroblasts and keratinocytes, and in smooth muscle and amnion. [provided by RefSeq, Jul 2008]. Publication Note: This RefSeq record includes a subset of the publications that are available for this gene. Please see the Gene record to access additional publications. ##Evidence-Data-START## RNAseq introns :: mixed/partial sample support ERS025081, ERS025082 [ECO:0000350] ##Evidence-Data-END## COMPLETENESS: full length. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-2866 BC064839.1 153-3018 2867-2903 AC114488.3 118219-118255 c 2904-3845 M92642.1 2689-3630 3846-5331 S57132.1 2227-3712 5332-5584 AC114488.3 87532-87784 c FEATURES Location/Qualifiers source 1..5584 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="1" /map="1p35-p34" gene 1..5584 /gene="COL16A1" /gene_synonym="447AA; FP1572" /note="collagen, type XVI, alpha 1" /db_xref="GeneID:1307" /db_xref="HGNC:2193" /db_xref="MIM:120326" exon 1..331 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 332..438 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" misc_feature 348..350 /gene="COL16A1" /gene_synonym="447AA; FP1572" /note="upstream in-frame stop codon" CDS 366..5180 /gene="COL16A1" /gene_synonym="447AA; FP1572" /note="collagen XVI, alpha-1 polypeptide; collagen alpha-1(XVI) chain; alpha 1 type XVI collagen" /codon_start=1 /product="collagen alpha-1(XVI) chain precursor" /protein_id="NP_001847.3" /db_xref="GI:100913220" /db_xref="CCDS:CCDS41297.1" /db_xref="GeneID:1307" /db_xref="HGNC:2193" /db_xref="MIM:120326" /translation="
MWVSWAPGLWLLGLWATFGHGANTGAQCPPSQQEGLKLEHSSSLPANVTGFNLIHRLSLMKTSAIKKIRNPKGPLILRLGAAPVTQPTRRVFPRGLPEEFALVLTLLLKKHTHQKTWYLFQVTDANGYPQISLEVNSQERSLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVAGRVASVHVDCSSASSQPLGPRRPMRPVGHVFLGLDAEQGKPVSFDLQQVHIYCDPELVLEEGCCEILPAGCPPETSKARRDTQSNELIEINPQSEGKVYTRCFCLEEPQNSEVDAQLTGRISQKAERGAKVHQETAADECPPCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASGDVGSPGFGLPGLPGRAGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGPQGPPGIPGPPGPPGVPGLQGVPGNNGLPGQPGLTAELGSLPIEQHLLKSICGDCVQGQRAHPGYLVEKGEKGDQGIPGVPGLDNCAQCFLSLERPRAEEARGDNSEGDPGCVGSPGLPGPPGLPGQRGEEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGATGPPGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGPPGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGEKGRAGMPGGPGKSGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDERMAYYTSRMQFPMEMAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQGPPGYGKMGATGPMGQQGIPGIPGPPGPMGQPGKAGHCNPSDCFGAMPMEQQYPPMKTMKGPFG
" sig_peptide 366..428 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 513..1058 /gene="COL16A1" /gene_synonym="447AA; FP1572" /note="Thrombospondin N-terminal -like domains; Region: TSPN; smart00210" /db_xref="CDD:128506" misc_feature 1059..1487 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Nonhelical region 10 (NC10)" misc_feature 1488..1883 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Triple-helical region 9 (COL9) with 3 imperfections" misc_feature 1884..1928 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Nonhelical region 9 (NC9)" misc_feature 1929..2030 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Triple-helical region 8 (COL8) with 1 imperfection" misc_feature 1983..1991 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Cell attachment site (Potential)" misc_feature 2031..2081 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Nonhelical region 8 (NC8)" misc_feature 2082..2258 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Triple-helical region 7 (COL7) with 1 imperfection" misc_feature 2259..2321 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Nonhelical region 7 (NC7)" misc_feature 2322..2534 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Triple-helical region 6 (COL6) with 1 imperfection" misc_feature 2535..2579 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Nonhelical region 6 (NC6)" misc_feature 2580..2993 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Triple-helical region 5 (COL5) with 3 imperfections" misc_feature 2994..3026 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Nonhelical region 5 (NC5)" misc_feature 3027..3182 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Triple-helical region 4 (COL4) with 2 imperfections" misc_feature 3183..3284 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Nonhelical region 4 (NC4)" misc_feature 3285..3329 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Triple-helical region 3 (COL3)" misc_feature 3330..3398 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Nonhelical region 3 (NC3)" misc_feature 3381..3389 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Cell attachment site (Potential)" misc_feature 3399..4664 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Triple-helical region 2 (COL2) with 2 imperfections" misc_feature 4044..4052 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="non-experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Cell attachment site (Potential)" misc_feature 4665..4781 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Nonhelical region 2 (NC2)" misc_feature 4782..5099 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Triple-helical region 1 (COL1) with 2 imperfections" misc_feature 5100..5177 /gene="COL16A1" /gene_synonym="447AA; FP1572" /experiment="experimental evidence, no additional details recorded" /note="propagated from UniProtKB/Swiss-Prot (Q07092.2); Region: Nonhelical region 1 (NC1)" exon 439..513 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" variation 446 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="a" /replace="t" /db_xref="dbSNP:2229802" exon 514..631 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" variation 550 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="a" /replace="c" /db_xref="dbSNP:2228552" exon 632..755 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" variation 633 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="a" /replace="c" /db_xref="dbSNP:2228550" variation 656 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="a" /replace="g" /db_xref="dbSNP:2228551" variation 712 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="c" /replace="t" /db_xref="dbSNP:34091659" exon 756..1022 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1023..1103 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1104..1229 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1230..1283 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1284..1310 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1311..1346 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1347..1373 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1374..1436 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1437..1478 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" variation 1462 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="c" /replace="t" /db_xref="dbSNP:2229803" variation 1472 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="a" /replace="g" /db_xref="dbSNP:3818788" exon 1479..1523 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1524..1559 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1560..1622 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1623..1667 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1668..1763 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1764..1802 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1803..1847 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" variation 1810 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="c" /replace="t" /db_xref="dbSNP:34531794" exon 1848..1874 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 1875..1985 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" variation 1960 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="a" /replace="g" /db_xref="dbSNP:35791190" exon 1986..2021 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2022..2132 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2133..2168 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2169..2204 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2205..2249 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2250..2381 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2382..2417 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2418..2525 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2526..2648 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" variation 2598 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="a" /replace="g" /db_xref="dbSNP:34770879" variation 2637 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="c" /replace="g" /db_xref="dbSNP:34976864" exon 2649..2702 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2703..2744 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2745..2780 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2781..2834 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2835..2903 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2904..2948 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2949..2975 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 2976..3035 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3036..3083 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3084..3137 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" variation 3091 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="c" /replace="t" /db_xref="dbSNP:2229804" exon 3138..3191 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3192..3224 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3225..3341 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3342..3383 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" variation 3381 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="c" /replace="t" /db_xref="dbSNP:35986497" exon 3384..3470 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" variation 3442 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="c" /replace="t" /db_xref="dbSNP:2228553" exon 3471..3515 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3516..3560 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3561..3614 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3615..3668 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3669..3722 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" variation 3685 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="a" /replace="g" /db_xref="dbSNP:34013895" exon 3723..3767 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3768..3821 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3822..3857 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3858..3920 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3921..3992 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 3993..4046 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4047..4091 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4092..4136 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4137..4190 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4191..4244 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4245..4295 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4296..4385 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4386..4421 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4422..4466 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4467..4655 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4656..4722 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4723..4899 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4900..4977 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" exon 4978..5584 /gene="COL16A1" /gene_synonym="447AA; FP1572" /inference="alignment:Splign:1.39.8" STS 5084..5297 /gene="COL16A1" /gene_synonym="447AA; FP1572" /standard_name="STS-W96115" /db_xref="UniSTS:25967" STS 5131..5256 /gene="COL16A1" /gene_synonym="447AA; FP1572" /standard_name="RH69199" /db_xref="UniSTS:73013" variation 5189 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="a" /replace="c" /db_xref="dbSNP:1061389" STS 5198..5428 /gene="COL16A1" /gene_synonym="447AA; FP1572" /standard_name="STS-M92642" /db_xref="UniSTS:73133" STS 5200..5418 /gene="COL16A1" /gene_synonym="447AA; FP1572" /standard_name="SHGC-35321" /db_xref="UniSTS:45868" polyA_signal 5219..5224 /gene="COL16A1" /gene_synonym="447AA; FP1572" polyA_site 5243 /gene="COL16A1" /gene_synonym="447AA; FP1572" variation 5272 /gene="COL16A1" /gene_synonym="447AA; FP1572" /replace="g" /replace="t" /db_xref="dbSNP:1061392" polyA_signal 5314..5319 /gene="COL16A1" /gene_synonym="447AA; FP1572" polyA_site 5331 /gene="COL16A1" /gene_synonym="447AA; FP1572" polyA_signal 5549..5554 /gene="COL16A1" /gene_synonym="447AA; FP1572" polyA_signal 5556..5561 /gene="COL16A1" /gene_synonym="447AA; FP1572" polyA_signal 5563..5568 /gene="COL16A1" /gene_synonym="447AA; FP1572" polyA_site 5584 /gene="COL16A1" /gene_synonym="447AA; FP1572" ORIGIN
agtctagccgcctctggtgccgctggagccccctctaggccctcctcctcctcctccctggcgggccggtccagctgtgttccattagtgtccctggcaggcccccagccccctggaaccgcctctcttcccccacccggagtggccggcagtccccggcaggcgtgcgccgggcagcagacagccgggagagctcgagcgccaggaagctggggacccgtgaccgtcacggagagatagagaacccctagcggacctgaggaacctgggctctgcttcctccgcctgctgcctggactgctcagtgaggtggggggatccccggccaccggtgctgtggctgtagctgacctctttggaccgggatgtgggtatcctgggctcctggcctgtggctgctcggtctttgggctaccttcggccatggggcaaatacaggtgcacaatgcccaccttcacagcaggaaggactcaaattggaacacagtagtagcctgccagccaacgtgactggcttcaacctcatccaccgactcagcctcatgaagacgtctgccatcaagaagatccgcaaccccaaggggcctctcatcctgcgcctgggggcggcccccgtgacccagcccacgcgaagagtattccctcggggtctcccggaggagtttgccctggtgctgacactactgctgaagaaacacacccaccagaagacgtggtatctgtttcaagtgaccgatgcaaatgggtatccacagatatccctggaagtcaacagccaagagcggagcctggagctcagggcccagggccaggatggcgactttgtgtcctgcatcttcccagtgccccagctcttcgacttgcgttggcacaagctgatgctgagtgtggctggacgtgtggcctctgtgcacgtggactgcagctcagcctcctcccagcctctggggccccgacgacccatgaggcctgtgggccatgtatttctaggcttggatgctgagcagggcaagcctgtctcgtttgaccttcagcaggtgcacatctactgtgacccggagctcgtgctggaggagggctgctgtgagattttaccagcagggtgccccccagagacctccaaggcccgccgggacacccagagcaatgagctcattgagatcaatccacagtctgaaggcaaggtctacacccgctgcttctgcctggaggagcctcaaaacagcgaggtggatgcccagctgacgggaagaatcagccagaaggcagaaaggggagcaaaggtccatcaggagacagcagccgatgagtgtccgccctgtgtccatggtgcccgggacagcaatgtcacacttgctccctctggccccaagggagggaaaggtgagcggggcctgcctggtccaccaggctccaagggagagaagggagcacggggcaatgactgtgttcgaatctccccggatgccccacttcagtgtgcagaaggcccgaagggagagaagggggagtcaggagctctgggaccctcaggactcccaggctcaacaggcgagaagggccagaaaggcgagaagggcgacggaggcatcaagggcgtgccgggaaagccaggccgggacggccggccaggagagatctgtgtcattgggcccaaagggcagaagggagaccctggctttgttgggcctgaggggctggcaggagagcctgggccccccggcctccctggaccccctgggataggactgcctgggaccccgggggatccaggtggcccaccaggccccaagggagacaagggcagctcggggatcccaggaaaggaaggccctggtgggaaacctgggaagccaggtgtgaagggagagaagggtgacccctgtgaagtgtgcccaacactgcctgaagggttccagaactttgttggacttcctggaaagccagggcccaaaggggagcctggtgatcctgtaccagccaggggagaccctggcatccaaggcatcaaaggagagaagggggagccctgcttgtcctgcagctcggttgtaggggcccagcatcttgtgtcctccacaggggccagtggagatgtgggttcccctggctttggtctgcctggccttccgggtagagctggggttccagggctgaaaggagagaagggtaacttcggggaggcagggccagctggcagtccagggccaccaggaccagtggggccagcaggcatcaaaggggcgaagggggagccctgtgagccgtgcccagccctgtccaaccttcaggatggggatgtccgtgtggtggccttgcctggcccatccggagagaagggggaacctgggcctccaggctttggcttgccaggaaaacagggcaaggctggagagcgtggactgaaggggcagaagggtgatgctgggaatcctggagaccctggaacgccgggcaccacagggcggccaggactgtcaggagagcctggagttcagggccccgcggggccaaaaggagaaaagggtgatggctgcactgcctgccccagcctgcaggggacagtgacagacatggcaggacggcctgggcagcccggccccaaaggagagcagggccccgaaggcgtgggccgacctggtaaacccggccaacccggtctaccaggagttcaagggcccccaggactgaagggcgtgcagggagagccagggcctccaggaaggggagtccagggaccccagggggagcctggagccccgggtttgcctggcattcagggacttccgggacctcggggaccacctggccccactggagagaagggtgcccagggatctccaggggtgaaaggagccaccggacctgtgggacctcctggggccagtgtctctgggcctccgggccgtgatgggcagcaaggacagacgggactcagaggaacaccaggtgaaaaaggaccacgaggagagaagggtgagccaggggagtgctcctgcccctctcaaggagacctcatcttctctggcatgccgggtgctccgggactttggatgggcagctcctggcagccgggcccgcagggtccaccaggtattcccggaccaccaggcccccctggagtacctgggctgcagggagtgcctggaaacaacggtttgccaggacagcctgggctcactgcagaactgggatccttaccaattgaacagcacctccttaagagtatctgcggggactgtgtccaggggcagagggcccacccagggtacctcgtggagaagggagagaagggagaccagggcatccctggtgtgccaggcctcgacaactgcgcccagtgctttttgtcactggagcgcccaagagccgaggaggcccggggtgacaacagtgagggagatcctggctgtgttgggagcccaggcctacctggtcctccgggattgccaggccagagaggagaagagggtccgcctggcatgaggggctccccgggtcctccaggccctatcggccccccaggttttcctggtgctgttggctcccccggattgcctggccttcaaggagagcgaggtctcacgggcctgactggagacaagggggagccgggtcctccagggcaaccaggttacccaggtgccacgggccccccaggactgcctggcatcaagggggagcgtggctacaccgggtcagcgggagagaaaggagagccgggccccccaggatctgaaggcctcccaggccccccaggcccagcgggtcccagaggagagcgaggaccccaaggtaactccggtgagaagggcgaccagggatttcaaggccagccaggctttccgggcccaccgggtccccctggattcccaggcaaagttggatcacctggcccacctggccctcaagcagagaagggcagcgaagggattcgaggcccatcaggcctgcctggctcccctgggccaccgggacctcctgggattcagggccccgccggtctggatggtttggatgggaaggacggcaagcctggcttgaggggggaccctggtcctgctggcccccctggactcatgggaccaccgggctttaaggggaaaacaggacatcctggcctcccaggacctaagggtgactgtggcaaaccaggtccccctggcagcactggccggcctggcgcagagggtgaacctggtgccatgggaccccagggaagacccggtcccccgggacacgttgggccaccagggcctccaggccagccaggaccagctgggatctctgcagtgggtctgaaaggagaccgaggagccaccggagaaaggggccttgcaggcctcccaggccagcccggcccccctggacaccctggccccccaggcgaacctggtacggatggtgcagctggcaaagagggaccccctggaaagcagggattctatggacctcctggtcccaagggtgatccaggagctgcaggacagaagggccaggcaggagagaaggggagagccggcatgcctggtggacctggcaagagtggttccatggggcctgttgggccaccgggccctgcaggagagagaggccaccctggagctccggggccttcggggagccctggcttgcctggtgtgcctggctccatgggagacatggtgaattatgatgaaatcaagaggttcatcagacaagagatcattaaaatgtttgatgagagaatggcttactacacctccaggatgcagttccccatggagatggcggcagctccgggacgaccagggcctccagggaaggatggtgctccgggcaggccaggtgctccagggtcacctgggctccctggtcagattggcagagaaggacggcagggcttgccaggagtaagaggattgcctggtaccaaaggtgaaaaaggggacattggtattggcattgcaggagaaaatggtcttcccggccccccaggtcctcaaggtcctccaggctatggcaagatgggtgcaacaggaccaatgggccagcaaggcatccctggcatccctgggcccccgggtcccatgggccagccaggcaaggctggccactgtaatccctctgactgctttggggccatgccgatggagcagcagtacccacccatgaaaaccatgaaggggccttttggctgaaattccccacctgcctttggatgaaagactccgttgggaataaatggccaaagcttataggactctgtgacaggttgtgaatgttttttttgttgttgttgttgtttttaattgctgttaatattttttaaataataaagaaacaaaactatctgccctttcccttccagtgggttcctctggtgctgcagccagagctccctgttgccctccttttcccgtttagtcccaggaacaaaaaagggcattttgggtacaggggcatatacctgtaatcctagctattcaaggggctgaggtgggaggatcgcctgagcccaggagtttgagaccagtctaagcaacataatgagactcagtctccgaaaaataaaaattaaaaaataaagggtatttccctcctt
//
ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:1307 -> Molecular function: GO:0005178 [integrin binding] evidence: IDA GeneID:1307 -> Molecular function: GO:0005515 [protein binding] evidence: IPI GeneID:1307 -> Biological process: GO:0007155 [cell adhesion] evidence: IDA GeneID:1307 -> Biological process: GO:0007229 [integrin-mediated signaling pathway] evidence: TAS GeneID:1307 -> Biological process: GO:0007565 [female pregnancy] evidence: TAS GeneID:1307 -> Biological process: GO:0022617 [extracellular matrix disassembly] evidence: TAS GeneID:1307 -> Biological process: GO:0030198 [extracellular matrix organization] evidence: TAS GeneID:1307 -> Biological process: GO:0030574 [collagen catabolic process] evidence: TAS GeneID:1307 -> Biological process: GO:0071230 [cellular response to amino acid stimulus] evidence: IEA GeneID:1307 -> Cellular component: GO:0005576 [extracellular region] evidence: TAS GeneID:1307 -> Cellular component: GO:0005597 [collagen type XVI] evidence: TAS GeneID:1307 -> Cellular component: GO:0005788 [endoplasmic reticulum lumen] evidence: TAS
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