GGRNA Home | Help | Advanced search

2020-10-24 07:32:29, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_001265610            3260 bp    mRNA    linear   PRI 20-APR-2013
DEFINITION  Homo sapiens trafficking protein, kinesin binding 1 (TRAK1),
            transcript variant 5, mRNA.
ACCESSION   NM_001265610
VERSION     NM_001265610.1  GI:388490363
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 3260)
  AUTHORS   van Spronsen,M., Mikhaylova,M., Lipka,J., Schlager,M.A., van den
            Heuvel,D.J., Kuijpers,M., Wulf,P.S., Keijzer,N., Demmers,J.,
            Kapitein,L.C., Jaarsma,D., Gerritsen,H.C., Akhmanova,A. and
            Hoogenraad,C.C.
  TITLE     TRAK/Milton motor-adaptor proteins steer mitochondrial trafficking
            to axons and dendrites
  JOURNAL   Neuron 77 (3), 485-502 (2013)
   PUBMED   23395375
  REMARK    GeneRIF: The results of this study established a key role for
            mammalian TRAK1 proteins in axonal and dendritic targeting of
            mitochondria.
REFERENCE   2  (bases 1 to 3260)
  AUTHORS   Fox,C.S., Liu,Y., White,C.C., Feitosa,M., Smith,A.V.,
            Heard-Costa,N., Lohman,K., Johnson,A.D., Foster,M.C.,
            Greenawalt,D.M., Griffin,P., Ding,J., Newman,A.B., Tylavsky,F.,
            Miljkovic,I., Kritchevsky,S.B., Launer,L., Garcia,M.,
            Eiriksdottir,G., Carr,J.J., Gudnason,V., Harris,T.B., Cupples,L.A.
            and Borecki,I.B.
  CONSRTM   GIANT Consortium; MAGIC Consortium; GLGC Consortium
  TITLE     Genome-wide association for abdominal subcutaneous and visceral
            adipose reveals a novel locus for visceral fat in women
  JOURNAL   PLoS Genet. 8 (5), E1002695 (2012)
   PUBMED   22589738
REFERENCE   3  (bases 1 to 3260)
  AUTHORS   An,Y., Zhou,Y., Ren,G., Tian,Q., Lu,Y., Li,H., Li,K., Su,T., Xu,B.,
            Chen,S., Wang,T., Zhang,X., Nie,Y., Wang,X. and Zhao,Q.
  TITLE     Elevated expression of MGb2-Ag/TRAK1 is correlated with poor
            prognosis in patients with colorectal cancer
  JOURNAL   Int J Colorectal Dis 26 (11), 1397-1404 (2011)
   PUBMED   21573901
  REMARK    GeneRIF: MGb2-Ag/TRAK1 may play an important role in the
            development of colorectal cancer (CRC) and may be a valuable
            prognostic indicator of CRC.
REFERENCE   4  (bases 1 to 3260)
  AUTHORS   Xu,B., Roos,J.L., Dexheimer,P., Boone,B., Plummer,B., Levy,S.,
            Gogos,J.A. and Karayiorgou,M.
  TITLE     Exome sequencing supports a de novo mutational paradigm for
            schizophrenia
  JOURNAL   Nat. Genet. 43 (9), 864-868 (2011)
   PUBMED   21822266
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3260)
  AUTHORS   Koutsopoulos,O.S., Laine,D., Osellame,L., Chudakov,D.M.,
            Parton,R.G., Frazier,A.E. and Ryan,M.T.
  TITLE     Human Miltons associate with mitochondria and induce
            microtubule-dependent remodeling of mitochondrial networks
  JOURNAL   Biochim. Biophys. Acta 1803 (5), 564-574 (2010)
   PUBMED   20230862
REFERENCE   6  (bases 1 to 3260)
  AUTHORS   Ozyildirim,A.M., Wistow,G.J., Gao,J., Wang,J., Dickinson,D.P.,
            Frierson,H.F. Jr. and Laurie,G.W.
  TITLE     The lacrimal gland transcriptome is an unusually rich source of
            rare and poorly characterized gene transcripts
  JOURNAL   Invest. Ophthalmol. Vis. Sci. 46 (5), 1572-1580 (2005)
   PUBMED   15851553
REFERENCE   7  (bases 1 to 3260)
  AUTHORS   Brickley,K., Smith,M.J., Beck,M. and Stephenson,F.A.
  TITLE     GRIF-1 and OIP106, members of a novel gene family of coiled-coil
            domain proteins: association in vivo and in vitro with kinesin
  JOURNAL   J. Biol. Chem. 280 (15), 14723-14732 (2005)
   PUBMED   15644324
  REMARK    GeneRIF: GRIF-1 and OIP106 have roles in protein and/or organelle
            transport in excitable cells in a manner analogous to glutamate
            receptor-interacting-protein 1
REFERENCE   8  (bases 1 to 3260)
  AUTHORS   Colland,F., Jacq,X., Trouplin,V., Mougin,C., Groizeleau,C.,
            Hamburger,A., Meil,A., Wojcik,J., Legrain,P. and Gauthier,J.M.
  TITLE     Functional proteomics mapping of a human signaling pathway
  JOURNAL   Genome Res. 14 (7), 1324-1332 (2004)
   PUBMED   15231748
REFERENCE   9  (bases 1 to 3260)
  AUTHORS   Iyer,S.P. and Hart,G.W.
  TITLE     Roles of the tetratricopeptide repeat domain in O-GlcNAc
            transferase targeting and protein substrate specificity
  JOURNAL   J. Biol. Chem. 278 (27), 24608-24616 (2003)
   PUBMED   12724313
REFERENCE   10 (bases 1 to 3260)
  AUTHORS   Iyer,S.P., Akimoto,Y. and Hart,G.W.
  TITLE     Identification and cloning of a novel family of coiled-coil domain
            proteins that interact with O-GlcNAc transferase
  JOURNAL   J. Biol. Chem. 278 (7), 5399-5409 (2003)
   PUBMED   12435728
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            DA193280.1, AL713787.1 and AC018358.20.
            
            Transcript Variant: This variant (5) differs in the 5' and 3' UTRs
            and initiates translation at an alternate start codon, compared to
            variant 1. The encoded isoform (5) is shorter and has distinct N-
            and C-termini, compared to isoform 1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AL713787.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           ERS025082, ERS025084 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-99                DA193280.1         1-99
            100-621             AL713787.1         4-525
            622-622             AC018358.20        81771-81771         c
            623-1548            AL713787.1         527-1452
            1549-3260           AC018358.20        65689-67400         c
FEATURES             Location/Qualifiers
     source          1..3260
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="3"
                     /map="3p22.1"
     gene            1..3260
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /note="trafficking protein, kinesin binding 1"
                     /db_xref="GeneID:22906"
                     /db_xref="HGNC:29947"
                     /db_xref="MIM:608112"
     exon            1..365
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       33
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146233510"
     variation       52
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:186891711"
     variation       53
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:376699150"
     misc_feature    176..178
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /note="upstream in-frame stop codon"
     variation       193
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:41286050"
     variation       206
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:192013055"
     CDS             302..1972
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /note="isoform 5 is encoded by transcript variant 5;
                     OGT(O-Glc-NAc transferase)-interacting protein 106 KDa;
                     106 kDa O-GlcNAc transferase-interacting protein; milton
                     homolog 1; O-linked N-acetylglucosamine transferase
                     interacting protein 106"
                     /codon_start=1
                     /product="trafficking kinesin-binding protein 1 isoform 5"
                     /protein_id="NP_001252539.1"
                     /db_xref="GI:388490364"
                     /db_xref="CCDS:CCDS58826.1"
                     /db_xref="GeneID:22906"
                     /db_xref="HGNC:29947"
                     /db_xref="MIM:608112"
                     /translation="
MQKFIEADYYELDWYYEECSDVLCAERVGQMTKTYNDIDAVTRLLEEKERDLELAARIGQSLLKKNKTLTERNELLEEQVEHIREEVSQLRHELSMKDELLQFYTSAAEESEPESVCSTPLKRNESSSSVQNYFHLDSLQKKLKDLEEENVVLRSEASQLKTETITYEEKEQQLVNDCVKELRDANVQIASISEELAKKTEDAARQQEEITHLLSQIVDLQKKAKACAVENEELVQHLGAAKDAQRQLTAELRELEDKYAECMEMLHEAQEELKNLRNKTMPNTTSRRYHSLGLFPMDSLAAEIEGTMRKELQLEEAESPDITHQKRVFETVRNINQVVKQRSLTPSPMNIPGSNQSSAMNSLLSSCVSTPRSSFYGSDIGNVVLDNKTNSIILETEAADLGNDERSKKPGTPGTPGSHDLETALRRLSLRRENYLSERRFFEEEQERKLQELAEKGELRSGSLTPTESIMSLGTHSRFSEFTGFSGMSFSSRSYLPEKLQIVKPLEGDHAGPRPLSVLLGDSLWSLIHLRKAGHLCHAYSFFFRDSHPRCWFEFL
"
     misc_feature    365..1141
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /note="HAP1 N-terminal conserved region; Region: HAP1_N;
                     pfam04849"
                     /db_xref="CDD:191111"
     misc_feature    <869..1147
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /note="ATP synthase B/B' CF(0); Region: ATP-synt_B;
                     cl07975"
                     /db_xref="CDD:212286"
     misc_feature    1310..1825
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /note="Kinesin associated protein; Region: Milton;
                     pfam12448"
                     /db_xref="CDD:152882"
     variation       319
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376792946"
     variation       349
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369295512"
     exon            366..442
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       412
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368078209"
     variation       419
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:113672596"
     exon            443..559
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       466
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:377073086"
     variation       481
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:138576547"
     variation       484
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:141558684"
     variation       488
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369716330"
     variation       502
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:145771761"
     variation       511
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:11544368"
     variation       512
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:376036345"
     variation       521
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:373262345"
     exon            560..660
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       572
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200488500"
     variation       573
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:139582244"
     variation       583
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:377117839"
     variation       619
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:41289564"
     variation       640
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368331030"
     exon            661..769
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       699
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:145279682"
     variation       707
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:144666749"
     variation       710
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:371843104"
     variation       766
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:141503991"
     exon            770..848
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       796
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:375344264"
     variation       835
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:151106971"
     exon            849..979
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       856
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:150238883"
     variation       894
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:199959935"
     variation       900
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368794100"
     variation       937
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201576814"
     variation       945
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:145303759"
     variation       966
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:137886266"
     variation       973
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:188394460"
     exon            980..1054
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       982
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:144162412"
     variation       1005
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:376442996"
     variation       1009
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:60098029"
     variation       1015
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:369469560"
     variation       1021
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201397120"
     exon            1055..1192
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       1110
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:144731827"
     variation       1130
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:370668547"
     variation       1152
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:139261502"
     variation       1173
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374334482"
     variation       1174
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:9851455"
     variation       1190
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:144710739"
     exon            1193..1269
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       1210
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376778379"
     variation       1227
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:370150047"
     variation       1241
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:146849711"
     variation       1252
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:140638437"
     variation       1253
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200860677"
     variation       1257
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:372269973"
     exon            1270..1506
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       1281
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:371113304"
     variation       1323
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:137919210"
     variation       1337
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374216835"
     variation       1357
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:376316651"
     variation       1362
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:370414753"
     variation       1369
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201859615"
     variation       1374
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:138673537"
     variation       1378
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:41289572"
     variation       1381
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:71315528"
     variation       1402
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368017667"
     variation       1403
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200470888"
     variation       1412
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:148528290"
     variation       1429
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374390537"
     variation       1443
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:77593921"
     variation       1451
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:368474947"
     variation       1456
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:34458401"
     variation       1495
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:201574981"
     variation       1498
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:143049389"
     variation       1499
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:148568284"
     variation       1500
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376148227"
     exon            1507..3260
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /inference="alignment:Splign:1.39.8"
     variation       1518
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:370817285"
     variation       1520
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:377190225"
     variation       1530
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:138190882"
     variation       1534
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:367869302"
     variation       1540
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:370176823"
     variation       1572
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:143656268"
     variation       1594
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:138239150"
     variation       1611
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:148722617"
     variation       1612
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201849317"
     variation       1628
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:146404227"
     variation       1630
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:139748722"
     variation       1663
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:369449368"
     variation       1673
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:151087421"
     variation       1679
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:372408014"
     variation       1682
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372066516"
     variation       1684
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375194394"
     variation       1685
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:369505744"
     variation       1713
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:199801758"
     variation       1715
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:372573676"
     variation       1725
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:377046178"
     variation       1734
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:149693845"
     variation       1748
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:116570962"
     variation       1751
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:112579771"
     variation       1753
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:146070004"
     variation       1763
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372868771"
     variation       1832
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:34248438"
     variation       1833
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201520832"
     variation       1834
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:376172950"
     variation       1841
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368165578"
     variation       1853
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:372427225"
     variation       1867
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:113748092"
     variation       1870
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:369613464"
     variation       1900
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:9311309"
     variation       1935
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:369941061"
     variation       1957
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:183752746"
     variation       2050
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:76462969"
     variation       2198
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:79500038"
     variation       2201
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:9311310"
     variation       2237
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:139090851"
     variation       2272..2274
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace=""
                     /replace="t"
                     /db_xref="dbSNP:35921270"
     variation       2272
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:79408169"
     variation       2298
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:149915818"
     variation       2380
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:79948485"
     variation       2399
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:188179659"
     variation       2407
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:193260353"
     variation       2525
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:115650099"
     variation       2535
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:9829097"
     variation       2566..2567
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace=""
                     /replace="tt"
                     /db_xref="dbSNP:145667231"
     variation       2566
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace=""
                     /replace="t"
                     /replace="ttt"
                     /replace="tttt"
                     /db_xref="dbSNP:34602604"
     variation       2576
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace=""
                     /replace="tt"
                     /replace="ttt"
                     /db_xref="dbSNP:66997507"
     variation       2577
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace=""
                     /replace="tt"
                     /replace="tttt"
                     /db_xref="dbSNP:67007447"
     variation       2584
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace=""
                     /replace="aa"
                     /replace="aaa"
                     /db_xref="dbSNP:71078425"
     variation       2586
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace=""
                     /replace="ttt"
                     /db_xref="dbSNP:60498260"
     variation       2588..2592
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace=""
                     /replace="attta"
                     /db_xref="dbSNP:74935366"
     variation       2677
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:375797814"
     variation       2703
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:56347833"
     variation       2718
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:144939326"
     variation       2734
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:73831718"
     variation       2837
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:59419342"
     variation       2842
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:200762079"
     variation       2857
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:1129295"
     variation       2982
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:149091247"
     variation       2996
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:11294121"
     variation       3001
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:367678182"
     variation       3094
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:9853735"
     variation       3107..3108
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace=""
                     /replace="ta"
                     /db_xref="dbSNP:371500558"
     STS             3114..3238
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /standard_name="WI-15128"
                     /db_xref="UniSTS:81442"
     variation       3188
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377241812"
     variation       3246
                     /gene="TRAK1"
                     /gene_synonym="MILT1; OIP106"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:184049215"
ORIGIN      
attcagggctgctgtccagtgctgctttattggcagtgctgccagggtctccgttagctctctgcaaattgccttcctttctgctcctcctactccctccttcccccatagaatttttcttttcattgcccactttactgttttggctccagactgtcgttaagaatgtacagcctaattctggtgtgtttcgggatattcttctgtccagtattctggaagggcggggaggcatggcagcgttttacttgacgttgatggtgctgtgaagtccattctttcctctgcaagactactgactatgcagaaatttatcgaagcggattattatgaactagactggtattatgaagaatgctcggatgttttatgtgctgaaagagttggccagatgactaagacatataatgacatagatgctgtcactcggcttcttgaggagaaagagcgggatttagaattggccgctcgcatcggccagtcgttgttgaagaagaacaagaccctaaccgagaggaacgagctgctggaggagcaggtggaacacatcagggaggaggtgtctcagctccggcatgagctgtccatgaaggatgagctgcttcagttctacaccagcgctgcggaggagagtgagcccgagtccgtttgctcaaccccgttgaagaggaatgagtcgtcctcctcagtccagaattactttcatttggattctcttcaaaagaagctgaaagaccttgaagaggagaatgttgtacttcgatccgaggccagccagctgaagacagagaccatcacctatgaggagaaggagcagcagctggtcaatgactgcgtgaaggagctgagggatgccaatgtccagattgctagtatctcagaggaactggccaagaagacggaagatgctgcccgccagcaagaggagatcacacacctgctatcgcaaatagttgatttgcagaaaaaggcaaaagcttgcgcagtggaaaatgaagaacttgtccagcatctgggggctgctaaggatgcccagcggcagctcacagccgagctgcgtgagctggaggacaagtacgcagagtgcatggagatgctgcatgaggcgcaggaggagctgaagaacctccggaacaaaaccatgcccaataccacgtctcggcgctaccactcactgggcctgtttcccatggattccttggcagcagagattgagggaacgatgcgcaaggagctgcagttggaagaggccgagtctccagacatcactcaccagaagcgtgtctttgagacagtaagaaacatcaaccaggttgtcaagcagagatctctgaccccttctcccatgaacatccccggctccaaccagtcctcggccatgaactccctcctgtccagctgcgtcagcaccccccggtccagcttctacggcagcgacataggcaacgtcgtcctcgacaacaagaccaacagcatcattctggaaacagaggcagccgacctgggaaacgatgagcggagtaagaagccggggacgccgggcaccccaggctcccacgacctggagacggcgctgaggcggctgtccctgcgccgggagaactacctctcggagaggaggttctttgaggaggagcaagagaggaagctccaggagctggcggagaagggcgagctgcgcagcggctccctcacacccactgagagcatcatgtccctgggcacgcactcccgcttctccgagttcaccggcttctctggcatgtccttcagcagccgctcctacctgcctgagaagctccagatcgtgaagccgctggaaggtgatcacgcggggcctcggcccctctctgtcctcctgggggactccctttggtccctgatccacctgcggaaggcggggcacctctgtcacgcctactcctttttcttccgcgacagccacccgcgctgctggtttgagttcctctgagggtggtgctcagcctaggcctccgtccctcccctctggctggcaggtgtgacaatgcacacataggccatgaaactcgccgaggaaagacaagcatgtgcactgtggtcttctagttctttcctttgcctttagaaccttagaaataaaaacttttgtggcggtagaggcactgctaactgattcaaaaattaattaggttttgcctgtgggtgtgaggaatgcagaaaattaatgctttagcttttctgcagttttggtgtcggggagaggttccaagcaaactctattaaatggggatttttttttccccataaccacctgaatgtgatttgtgggcttatgtgttctgatttgaacttcatatagcaaggttgtggcttttggcagatgcagtatgttctgagcgcggctcctagagtctacaatttggagtccaggaaggggtggctgtggagacaagtgagttttgtacctccgtaagccaccctttttcagggtcagttcatgtgttagtatcaggggcatctcagatgattaaactcatgggaaaaacttcctccttccctctctccctcttgccctcctgcctctttttttttttttttttttttaatttaggcacttataaaatgttttccctctacctgctgctactctgccaagagccaccaagtgcttatatttttcattttttactcctttagtttggaaagccatatacgtttgagaaggtgttttaaaactctgtgttacacttacgatgcaaagccaaatcagaacttctgtaaggcagaactttcccaactttaaaaaaattattgtcccctctaaggagccttcttagacgttttttcctaatcaccccccaaagacattttaataccacatatatattgtttatgtactatatgtatatacataaacaatacataagcaatacatctgtggtattaaaattaaaaagaatccaattatgtttacctcaaaagaacctgtttttgcttcttgggagcaatattgcccctgtgagactgcatgctataaggtaaggttgtgcttgttaaagacccaagacatgactgggttccacagtctccaaaggaagagggtgggctagtttgtttttattattattttaaaattgtataattggggtctttcttagagttcagaaaaggtatagcttactcttttttaattgtttatttagttgtaagcttggtgattgttttctgatccacattgtgtgtgttcttcaataaaatctttcatttctgcaatttta
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:22906 -> Molecular function: GO:0005515 [protein binding] evidence: IPI
            GeneID:22906 -> Molecular function: GO:0050811 [GABA receptor binding] evidence: IEA
            GeneID:22906 -> Biological process: GO:0006357 [regulation of transcription from RNA polymerase II promoter] evidence: ISS
            GeneID:22906 -> Biological process: GO:0006493 [protein O-linked glycosylation] evidence: ISS
            GeneID:22906 -> Biological process: GO:0006605 [protein targeting] evidence: ISS
            GeneID:22906 -> Biological process: GO:0008333 [endosome to lysosome transport] evidence: IDA
            GeneID:22906 -> Cellular component: GO:0005634 [nucleus] evidence: ISS
            GeneID:22906 -> Cellular component: GO:0005737 [cytoplasm] evidence: IDA
            GeneID:22906 -> Cellular component: GO:0005739 [mitochondrion] evidence: IDA
            GeneID:22906 -> Cellular component: GO:0005769 [early endosome] evidence: IDA

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 2.1 Japan License.