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2024-04-20 02:55:28, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001253790 1032 bp mRNA linear PRI 25-JUN-2013
DEFINITION Homo sapiens small integral membrane protein 22 (SMIM22),
transcript variant 1, mRNA.
ACCESSION NM_001253790 NR_029453 XM_001722191 XM_002343413 XM_002343414
XM_002344947 XM_002344948 XM_002347585 XM_002347586 XM_935391
XM_945742
VERSION NM_001253790.1 GI:359385720
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1032)
AUTHORS Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
CONSRTM Mammalian Gene Collection Program Team
TITLE Generation and initial analysis of more than 15,000 full-length
human and mouse cDNA sequences
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 99 (26), 16899-16903 (2002)
PUBMED 12477932
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
BC035868.1 and CK903133.1.
On Dec 6, 2011 this sequence version replaced gi:262073050.
Transcript Variant: This variant (1) represents the longest
transcript and encodes isoform (1). Both variants 1 and 3 encode
the same isoform (1).
##Evidence-Data-START##
Transcript exon combination :: BC035868.1, AA675917.1 [ECO:0000332]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-822 BC035868.1 1-822
823-1032 CK903133.1 320-529
FEATURES Location/Qualifiers
source 1..1032
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="16"
/map="16p13.3"
gene 1..1032
/gene="SMIM22"
/note="small integral membrane protein 22"
/db_xref="GeneID:440335"
/db_xref="HGNC:48329"
exon 1..375
/gene="SMIM22"
/inference="alignment:Splign:1.39.8"
variation 68
/gene="SMIM22"
/replace="c"
/replace="t"
/db_xref="dbSNP:181863512"
variation 98
/gene="SMIM22"
/replace="a"
/replace="g"
/db_xref="dbSNP:759992"
variation 113
/gene="SMIM22"
/replace="c"
/replace="t"
/db_xref="dbSNP:138720230"
variation 220
/gene="SMIM22"
/replace="c"
/replace="t"
/db_xref="dbSNP:3747608"
variation 224
/gene="SMIM22"
/replace="c"
/replace="t"
/db_xref="dbSNP:186426582"
variation 288
/gene="SMIM22"
/replace="a"
/replace="g"
/db_xref="dbSNP:190181867"
variation 293
/gene="SMIM22"
/replace="c"
/replace="t"
/db_xref="dbSNP:181844875"
variation 324
/gene="SMIM22"
/replace="c"
/replace="t"
/db_xref="dbSNP:79151406"
exon 376..500
/gene="SMIM22"
/inference="alignment:Splign:1.39.8"
variation 383
/gene="SMIM22"
/replace="a"
/replace="g"
/db_xref="dbSNP:74829349"
STS 408..827
/gene="SMIM22"
/db_xref="UniSTS:486182"
variation 420
/gene="SMIM22"
/replace="a"
/replace="g"
/db_xref="dbSNP:183293353"
variation 426
/gene="SMIM22"
/replace="a"
/replace="g"
/db_xref="dbSNP:187592886"
misc_feature 431..433
/gene="SMIM22"
/note="upstream in-frame stop codon"
exon 501..644
/gene="SMIM22"
/inference="alignment:Splign:1.39.8"
CDS 521..772
/gene="SMIM22"
/note="isoform 1 is encoded by transcript variant 1"
/codon_start=1
/product="uncharacterized protein LOC440335 isoform 1"
/protein_id="NP_001240719.1"
/db_xref="GI:359385721"
/db_xref="CCDS:CCDS59258.1"
/db_xref="GeneID:440335"
/db_xref="HGNC:48329"
/translation="
MAVSTEELEATVQEVLGRLKSHQFFQSTWDTVAFIVFLTFMGTVLLLLLLVVAHCCCCSSPGPRRESPRKERPKGVDNLALEP
"
variation 590
/gene="SMIM22"
/replace="g"
/replace="t"
/db_xref="dbSNP:73513279"
variation 624
/gene="SMIM22"
/replace="c"
/replace="t"
/db_xref="dbSNP:118018626"
exon 645..730
/gene="SMIM22"
/inference="alignment:Splign:1.39.8"
variation 649
/gene="SMIM22"
/replace="c"
/replace="g"
/db_xref="dbSNP:377225414"
variation 674
/gene="SMIM22"
/replace="a"
/replace="g"
/db_xref="dbSNP:192561106"
exon 731..1032
/gene="SMIM22"
/inference="alignment:Splign:1.39.8"
variation 787
/gene="SMIM22"
/replace="c"
/replace="t"
/db_xref="dbSNP:375411283"
variation 812
/gene="SMIM22"
/replace="a"
/replace="g"
/db_xref="dbSNP:184373341"
variation 836
/gene="SMIM22"
/replace="c"
/replace="g"
/db_xref="dbSNP:189079794"
variation 866
/gene="SMIM22"
/replace="c"
/replace="t"
/db_xref="dbSNP:181264433"
variation 868
/gene="SMIM22"
/replace="c"
/replace="t"
/db_xref="dbSNP:185044021"
variation 876
/gene="SMIM22"
/replace="a"
/replace="g"
/db_xref="dbSNP:62036088"
variation 878
/gene="SMIM22"
/replace="c"
/replace="t"
/db_xref="dbSNP:189109189"
variation 936
/gene="SMIM22"
/replace="c"
/replace="g"
/db_xref="dbSNP:141585095"
variation 965
/gene="SMIM22"
/replace="c"
/replace="g"
/db_xref="dbSNP:150874528"
variation 984
/gene="SMIM22"
/replace="a"
/replace="c"
/db_xref="dbSNP:139374328"
variation 985
/gene="SMIM22"
/replace="a"
/replace="g"
/db_xref="dbSNP:373556979"
variation 1017
/gene="SMIM22"
/replace="c"
/replace="g"
/db_xref="dbSNP:145436548"
ORIGIN
gcacttgctgtgacccccacctggaggcttctctgcagcaggagcaggagctgttacccttctaatccccacaatgaccccagcctaataatacaataatccccaagtagaaccaggggcccaaggccccctcgtcagctgggctcccacctccaagctgacgccctcaaccactctgctggggtgagcaaacccaggccccacagctggctagcgggatatccgtgtccacgattggcgccatgtgttttaagttgcagcgtcaaaaacatgaagagattgctttagcaaatatttacccagtcctgactctgcacatggcatcgttctaggagcccaaagatgttaacttgtttaataatcaagccctgtgaaggagtttatagcatctgtggattttggtacccacggaggtgctggaaccaatcgttgaggattccaaggacaactctatgatgcaggcacacctgtcctagctgctcaagggtcgtgggatgcaggtggcacggtgcacgccaagatggctgtgtccacagaggagctggaggccacggttcaggaagtcctggggagactgaagagccaccagtttttccagtccacatgggacactgttgccttcattgttttcctcaccttcatgggcaccgtgctgctcctgctgctgctggtcgtcgcccactgctgctgctgcagctcccccgggccccgcagggaaagccccaggaaggaaagacccaagggagtggataacttggccctggaaccctgaccctgtgtctcctgcccggtggcagtaacaaagccttctgtctgcccagagcctgagtctgcagtgtcttccagtccccgtctgggtgggtgacgcgggactcgccgccccactcaggtggccacctggcctctccaagccttcagtcagcacgactgtgccaggtcatcctcagtcacctagctgggaggggagctggtctcaggccgggcgcggtggctcacacctataatcccagcactttgggaggccgaggtggg
//
by
@meso_cacase at
DBCLS
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