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2024-03-29 07:06:25, GGRNA : RefSeq release 60 (20130726)

LOCUS       NM_001204210            2509 bp    mRNA    linear   PRI 28-JAN-2013
DEFINITION  Homo sapiens transmembrane protein 235 (TMEM235), transcript
            variant 1, mRNA.
ACCESSION   NM_001204210
VERSION     NM_001204210.1  GI:323633424
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Maher,G.J., Hilton,E.N., Urquhart,J.E., Davidson,A.E.,
            Spencer,H.L., Black,G.C. and Manson,F.D.
  TITLE     The cataract-associated protein TMEM114, and TMEM235, are
            glycosylated transmembrane proteins that are distinct from claudin
            family members
  JOURNAL   FEBS Lett. 585 (14), 2187-2192 (2011)
   PUBMED   21689651
  REMARK    GeneRIF: Data demonstrate that TMEM114, and the closely related
            TMEM235, are closely related to members of the voltage dependent
            calcium channel gamma subunit family.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC042066.1, AC087645.19, BI757060.1 and BI757981.1.
            
            Transcript Variant: This variant (1) represents the longest
            transcript and encodes the longest isoform (1).
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-607               BC042066.1         1-607
            608-608             AC087645.19        110118-110118       c
            609-662             BC042066.1         609-662
            663-950             BI757060.1         1-288
            951-1322            BI757981.1         221-592
            1323-2376           BC042066.1         1104-2157
            2377-2377           AC087645.19        101252-101252       c
            2378-2509           BC042066.1         2159-2290
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="17"
                     /map="17q25.3"
     gene            1..2509
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /note="transmembrane protein 235"
                     /db_xref="GeneID:283999"
                     /db_xref="HGNC:27563"
     exon            1..32
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /inference="alignment:Splign:1.39.8"
     exon            33..814
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /inference="alignment:Splign:1.39.8"
     variation       102
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:373457945"
     variation       208
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:8068282"
     misc_feature    277..279
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /note="upstream in-frame stop codon"
     variation       310
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:190468765"
     variation       454
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:182291436"
     variation       566
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:28758682"
     variation       568
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:186093980"
     variation       608
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:8068943"
     CDS             625..1296
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /note="isoform 1 precursor is encoded by transcript
                     variant 1; transmembrane protein ENSP00000364084"
                     /codon_start=1
                     /product="transmembrane protein 235 isoform 1 precursor"
                     /protein_id="NP_001191139.1"
                     /db_xref="GI:323633425"
                     /db_xref="CCDS:CCDS56046.1"
                     /db_xref="GeneID:283999"
                     /db_xref="HGNC:27563"
                     /translation="
MARLGALLLAAALGALLSFALLAAAVASDYWYILEVADAGNGSAWPGRAELLSSHSGLWRICEGQNGCIPLVDPFASESLDVSTSVQHLILLHRAVIVVLPLSLVLLVCGWICGLLSSLAQSVSLLLFTGCYFLLGSVLTLAGVSIYISYSHLAFAETVQQYGPQHMQGVRVSFGWSMALAWGSCALEAFSGTLLLSAAWTLSLSPPICGHLSPQQVGGRGGD
"
     sig_peptide     625..708
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /note="Potential; propagated from UniProtKB/Swiss-Prot
                     (A6NFC5.3)"
     misc_feature    706..1185
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /note="PMP-22/EMP/MP20/Claudin tight junction; Region:
                     Claudin_2; pfam13903"
                     /db_xref="CDD:206074"
     mat_peptide     709..1293
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /product="Transmembrane protein 235"
                     /experiment="experimental evidence, no additional details
                     recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (A6NFC5.3)"
     misc_feature    910..972
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (A6NFC5.3);
                     transmembrane region"
     misc_feature    1000..1062
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (A6NFC5.3);
                     transmembrane region"
     misc_feature    1150..1212
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /inference="non-experimental evidence, no additional
                     details recorded"
                     /note="propagated from UniProtKB/Swiss-Prot (A6NFC5.3);
                     transmembrane region"
     exon            815..895
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /inference="alignment:Splign:1.39.8"
     variation       822
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:61730389"
     variation       831
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:375739797"
     variation       864
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:9894186"
     variation       867
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:372588474"
     variation       869..870
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:35761771"
     exon            896..1033
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /inference="alignment:Splign:1.39.8"
     variation       915
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:79885699"
     variation       945
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:187765975"
     variation       951
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:11077350"
     variation       1011
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:75864177"
     exon            1034..1283
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /inference="alignment:Splign:1.39.8"
     variation       1076
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:373064807"
     variation       1077
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:375022647"
     variation       1091
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:200061211"
     variation       1092
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:61742450"
     variation       1098
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:377630810"
     variation       1132
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:200805574"
     variation       1146
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:61742094"
     variation       1176
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:370152360"
     variation       1192
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:370270314"
     variation       1197
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:373537642"
     variation       1227
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:373500178"
     variation       1246
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:201651781"
     variation       1259
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="t"
                     /db_xref="dbSNP:56319950"
     variation       1265
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:201037898"
     exon            1284..2491
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /inference="alignment:Splign:1.39.8"
     variation       1307
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:370508383"
     variation       1335
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:374568034"
     variation       1378
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:367858964"
     variation       1385
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:140627927"
     variation       1411..1412
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace=""
                     /replace="g"
                     /db_xref="dbSNP:35192751"
     variation       1437
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:370495709"
     variation       1608
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:142931529"
     variation       1609
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:147426172"
     variation       1690
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:74880921"
     variation       1704
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="g"
                     /db_xref="dbSNP:376042034"
     variation       1759
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:117797315"
     variation       1817
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="g"
                     /replace="t"
                     /db_xref="dbSNP:370651751"
     variation       1881..1882
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace=""
                     /replace="c"
                     /db_xref="dbSNP:35326777"
     variation       1900
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:7211670"
     variation       1915
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:139709610"
     variation       1946
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:111622843"
     variation       1989
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="g"
                     /db_xref="dbSNP:375124947"
     variation       2076
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368312826"
     variation       2119
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:149927936"
     variation       2170
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:74963848"
     variation       2206
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace=""
                     /replace="g"
                     /db_xref="dbSNP:35317789"
     variation       2318
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:182459585"
     variation       2377
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="a"
                     /replace="c"
                     /db_xref="dbSNP:7211218"
     variation       2486
                     /gene="TMEM235"
                     /gene_synonym="ARGM1"
                     /replace="c"
                     /replace="t"
                     /db_xref="dbSNP:368970365"
ORIGIN      
gtcctagaaggttctttctgcctgttttctccccccccgcccggctgtggggcccagccactgcacttcaccggatgccgtctggttggtcctcaggactgatacagaccaggaccccagggccagcccgtgccaggctcctatgcttccaggagcacgggtgggtggtcctgctgcctggccggccatcctcctggggtcggtctctggccgatcctccctcctcctctcaagccctgcacagcccggccaggcaggtgcatcttgtttggctgctgaggagccgggggttcagggaaattaaggaacgtgcccagggacccggggccagcccgtggggacgctgggattggagcccaagccccaggttcgccgcgcggctctcgacttcctctcctttcccccaggggcgagctcagcgaccgcagagaggtggggtcgatctccctgcgaccccagggggcccgcgaggccagtgcgcgggcaggagcggggacgtgctcagaagagccgggcgccgccgcgcccgcccgccccccgtcccccggctcccggctccgcgcgccccccgccgcccccggggccctgctacccccgacccgtcccctcccgccggccgcccccatggcccggctgggcgcgctgctcctggccgccgccctgggtgcactgctcagcttcgcgctcctggccgccgcggtcgccagcgactactggtacatcctggaggtggcggacgccggcaatggcagcgcctggcccgggcgcgcagagctgctctcctcgcactcggggctctggcgcatctgcgaagggcagaacggctgcatcccgctggtcgacccttttgccagtgagagcctggacgtctccacctcggtgcagcacctcatcttgctgcaccgtgcagtcattgtggtcctgcccctgagcctggtccttctcgtgtgtggctggatctgcggcctgctcagctccctggcccagagcgtgtctctgctgcttttcaccggctgctacttcctgctggggagtgtcctgacactggcgggggtcagcatctacatcagctactcgcacctggcctttgcggagacggtgcagcagtatggcccgcagcacatgcagggcgtccgcgtcagcttcggctggtccatggccctggcctggggctcctgtgccttggaggcattcagcggaaccctcctgctctcagctgcctggaccctcagcctgagccccccaatctgtggtcatctgagtccccagcaggtgggagggagagggggagactgaggcccagagcggcagagggacccacccagatcgcctggcgccagagagatgccgtctcaggccaaggcctccctggcctctgttctgtccactctccccgaagggcaggcttggtggagaagaggctgatgagagggcccgagagcccctccgatttgcaggggtggggggcaaggagctgagcgatccagatgtacccctctgccccctcccttgttctcaagcctgctaggtacttttcactgagcacttccgggaagagcaggcacccagatctctgtccttgtcctggcacaggctgctgctgcttccggcccccgacccttcctctctgcagcaacccgggggaggtatgccactgtgagtgccctggtgggcacactgagctggcagagatggaagtcccagaagggtggggtgggggtgtcatgccatggtggaggagtttggggccactccttgcctgcctcaaagggggcctggctgagggtgcttcttgaccacaggggccagggctgcctagggtggcgcagggctgggcctggagtttgggatgcaggcttgttaaacacagggcagaaccccaggttgggaggggctcagtttgcaggcccaggcccgcaggcccactgctggtcccagggtgagacaggtgagaagagggatggccagcacacacttgagtccccttgggccacaaaggctggggcacgcccaccgttatgcagatggacagttgaggtggctgcaggagaagggttcccagggcctgtacaacacgtggaagcactaaacggccccgtttggggtttgggggcccttcccgagtcttgagaggtcttgagaggtgtgctggggaaggtggcagcctcttgtagcttgatcttcctccaccctgccccacccctaggtctctttattgattcaaaggttaaggaagctcctgggggcttgagggggtggcacagttttggtggggcccagtgaggacaaatctggggggtgagcagggcctcctcttcctcctggtgtttgaacgtttaccattccatgtgggaccattgtgccaatttgtccttaagtaaatcacttgtgctgtgtgcagtataagccttttatttttcttagaacttttcaaaataggtaacacatgcctgtctgtcataaacagtacaaacgtgagcaaacactgtcaaaaaaaaaaaaaaaaaaa
//

Annotations:

ANNOTATIONS from NCBI Entrez Gene (20130726):
            GeneID:283999 -> Molecular function: GO:0005198 [structural molecule activity] evidence: IEA
            GeneID:283999 -> Cellular component: GO:0005783 [endoplasmic reticulum] evidence: IEA
            GeneID:283999 -> Cellular component: GO:0005923 [tight junction] evidence: IEA
            GeneID:283999 -> Cellular component: GO:0016021 [integral to membrane] evidence: IEA
            GeneID:283999 -> Cellular component: GO:0016324 [apical plasma membrane] evidence: IEA

by @meso_cacase at DBCLS
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