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2024-04-20 00:44:34, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001204180 1542 bp mRNA linear PRI 08-JUL-2013
DEFINITION Homo sapiens ZHX1-C8ORF76 readthrough (ZHX1-C8ORF76), mRNA.
ACCESSION NM_001204180
VERSION NM_001204180.1 GI:323510673
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1542)
AUTHORS Prakash,T., Sharma,V.K., Adati,N., Ozawa,R., Kumar,N., Nishida,Y.,
Fujikake,T., Takeda,T. and Taylor,T.D.
TITLE Expression of conjoined genes: another mechanism for gene
regulation in eukaryotes
JOURNAL PLoS ONE 5 (10), E13284 (2010)
PUBMED 20967262
REMARK Publication Status: Online-Only
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AC018992.6, BP340117.1, BC012379.2 and CA424676.1.
Summary: This locus represents naturally occurring read-through
transcription between the neighboring zinc fingers and homeoboxes 1
(ZHX1) and chromosome 8 open reading frame 76 (C8orf76) genes. The
read-through transcript encodes a protein that shares sequence
identity with the downstream gene, but it has a distinct N-terminus
encoded by exon structure from the upstream gene. [provided by
RefSeq, Feb 2011].
Sequence Note: This RefSeq record was created from transcript and
genomic sequence data to make the sequence consistent with the
reference genome assembly. The genomic coordinates used for the
transcript record were based on transcript alignments.
##Evidence-Data-START##
CDS exon combination :: BC012379.2 [ECO:0000331]
RNAseq introns :: single sample supports all introns
ERS025084, ERS025088 [ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
readthrough transcript :: includes exons from GeneID 11244, 84933
##RefSeq-Attributes-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-203 AC018992.6 32585-32787
204-271 BP340117.1 2-69
272-1525 BC012379.2 2-1255
1526-1542 CA424676.1 1-17 c
FEATURES Location/Qualifiers
source 1..1542
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="8"
/map="8q"
gene 1..1542
/gene="ZHX1-C8ORF76"
/note="ZHX1-C8ORF76 readthrough"
/db_xref="GeneID:100533106"
/db_xref="HGNC:42975"
exon 1..271
/gene="ZHX1-C8ORF76"
/inference="alignment:Splign:1.39.8"
variation complement(201)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:112845368"
exon 272..385
/gene="ZHX1-C8ORF76"
/inference="alignment:Splign:1.39.8"
misc_feature 332..334
/gene="ZHX1-C8ORF76"
/note="upstream in-frame stop codon"
variation complement(338)
/gene="ZHX1-C8ORF76"
/replace="g"
/replace="t"
/db_xref="dbSNP:188841471"
CDS 365..1243
/gene="ZHX1-C8ORF76"
/note="ZHX1-C8orf76 readthrough transcript protein"
/codon_start=1
/product="zinc fingers and homeoboxes protein 1, isoform
2"
/protein_id="NP_001191109.1"
/db_xref="GI:323510674"
/db_xref="CCDS:CCDS56552.1"
/db_xref="GeneID:100533106"
/db_xref="HGNC:42975"
/translation="
MLRKLWQWFYEETESSDDVEVLTLKKFKGDLAYRRQEYQKALQEYSSISEKLSSTNFAMKRDVQEGQARCLAHLGRHMEALEIAANLENKATNTDHLTTVLYLQLAICSSLQNLEKTIFCLQKLISLHPFNPWNWGKLAEAYLNLGPALSAALASSQKQHSFTSSDKTIKSFFPHSGKDCLLCFPETLPESSLFSVEANSSNSQKNEKALTNIQNCMAEKRETVLIETQLKACASFIRTRLLLQFTQPQQTSFALERNLRTQQEIEDKMKGFSFKEDTLLLIAEVSVSLGFM
"
misc_feature 458..>865
/gene="ZHX1-C8ORF76"
/note="poly-beta-1,6 N-acetyl-D-glucosamine export porin
PgaA; Region: PGA_TPR_OMP; TIGR03939"
/db_xref="CDD:188454"
exon 386..481
/gene="ZHX1-C8ORF76"
/inference="alignment:Splign:1.39.8"
variation complement(436)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="g"
/db_xref="dbSNP:374843957"
variation complement(466)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:371410196"
variation complement(467)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:187067978"
variation complement(468)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:34535722"
exon 482..625
/gene="ZHX1-C8ORF76"
/inference="alignment:Splign:1.39.8"
variation complement(506)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:375777926"
variation complement(584)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:371278312"
variation complement(621)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:111248288"
exon 626..1083
/gene="ZHX1-C8ORF76"
/inference="alignment:Splign:1.39.8"
variation complement(633..634)
/gene="ZHX1-C8ORF76"
/replace=""
/replace="g"
/db_xref="dbSNP:35816159"
variation complement(661)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:370613823"
variation complement(687)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="g"
/db_xref="dbSNP:147625869"
variation complement(693)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:189931490"
variation complement(702)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="t"
/db_xref="dbSNP:199631843"
variation complement(727)
/gene="ZHX1-C8ORF76"
/replace="g"
/replace="t"
/db_xref="dbSNP:111843338"
variation complement(760)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:200399778"
variation complement(774)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:372472316"
variation complement(776)
/gene="ZHX1-C8ORF76"
/replace="g"
/replace="t"
/db_xref="dbSNP:142676768"
variation complement(809)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="g"
/db_xref="dbSNP:148489515"
variation complement(824)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="g"
/db_xref="dbSNP:144219967"
variation complement(825)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="g"
/replace="t"
/db_xref="dbSNP:149988027"
variation complement(835..836)
/gene="ZHX1-C8ORF76"
/replace=""
/replace="g"
/db_xref="dbSNP:34480451"
variation complement(852)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:139580952"
variation complement(897)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:184220228"
variation complement(913)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:146334735"
variation complement(924)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="g"
/db_xref="dbSNP:200532140"
variation complement(937)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:367616509"
variation complement(940)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:199703332"
variation complement(958)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:142084336"
variation complement(963)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:138956285"
variation complement(1002)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:376195153"
variation complement(1020)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:369375046"
variation complement(1033)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:201158151"
variation complement(1034)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:150676502"
variation complement(1041)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:141996688"
variation complement(1045)
/gene="ZHX1-C8ORF76"
/replace="g"
/replace="t"
/db_xref="dbSNP:113006115"
variation complement(1060)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="c"
/db_xref="dbSNP:148173181"
variation complement(1064)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:370984961"
variation complement(1071)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:373491057"
variation complement(1077)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:369018257"
variation complement(1082)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:375819680"
exon 1084..1527
/gene="ZHX1-C8ORF76"
/inference="alignment:Splign:1.39.8"
variation complement(1084)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:59113457"
variation complement(1119)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:374975138"
variation complement(1185)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:61752957"
variation complement(1213)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:375438334"
variation complement(1222)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:373314640"
variation complement(1231)
/gene="ZHX1-C8ORF76"
/replace="c"
/replace="t"
/db_xref="dbSNP:369663764"
variation complement(1255)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:375161190"
variation complement(1302)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:371521088"
STS 1322..1470
/gene="ZHX1-C8ORF76"
/standard_name="RH93745"
/db_xref="UniSTS:85818"
variation complement(1502)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:367808105"
variation complement(1505)
/gene="ZHX1-C8ORF76"
/replace="a"
/replace="g"
/db_xref="dbSNP:374694438"
ORIGIN
gacgcgcgcgcgggagggccccgccttggccggctctctcccttccccctccgcccccggacggccgctggggcgcgcgcctctcctcgcacccccaccctgagtccccacactccgcggggccaccgagctgctgaggcccctttgcgggcccgccgagcggttccgggtttagggttcacaggtcagagttgactccctgaaaagtgcagccggtttgaaatgcaagatggcggcggcgtggcgctgagaggcgcggcggcccctgcaggagaagacagactgctgctttggacctgttggtaatgatggcctgagctaaacatctaactagaagggatacccttccatttcaaagaacagaatgctaaggaagctgtggcaatggttttatgaagaaacagaaagcagtgatgatgttgaagtgctgactctcaagaaattcaaaggagacctggcctacagacgacaagagtatcagaaagcactgcaggagtattccagtatctctgaaaaattgtcatcaaccaattttgccatgaaaagggatgtccaggaaggtcaggctcggtgtctggctcacctgggtaggcatatggaggcgctggagattgctgcaaacttggaaaataaagcaaccaacacagaccatttaaccacggtactctacctccagcttgctatttgttcaagtttgcagaacttggagaaaacaattttctgcctgcagaaactgatttctttgcatccttttaatccttggaactggggcaaattggcagaggcttacctgaatctggggccagctctttcagcagcacttgcgtcatctcagaaacagcacagtttcacctcaagtgacaaaactatcaaatccttctttccacactcaggaaaagactgtcttttgtgttttcctgaaaccttgcctgagagctctttattttctgtggaagcgaatagcagtaatagccagaaaaatgagaaagctctgacaaatatccaaaactgtatggcagaaaagagagaaacagtgttgatagagactcagctgaaagcatgtgcctcttttatacgaaccaggcttctgcttcagtttacccaacctcagcaaacatcgtttgctttggagaggaacttaaggactcagcaggaaattgaagataaaatgaaagggttcagcttcaaagaagacactttgctgttgatagctgaggtgagtgtatccctcgggtttatgtgaaacgaagcatcatagatattttccctggctctgatagcattttttataaagcagggccaaatttaatctactgaaggacttgtctccctcctctgtgtgccttttgatcactcagcaatcaccaaggcggcctcttgatcggcattcccctgcagcgtgcgggaccgcaggggctgtgtttcatgtacttgtcagtgcttgttagcacctgcctgcctgaacatcatcaatgcccaataattgtttgtttcagtgctgaataaatgaatgaatgaatgcttacaaaaaaaaaaaaaaaa
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@meso_cacase at
DBCLS
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