2024-04-20 19:31:36, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001199054 2774 bp mRNA linear PRI 07-JUL-2013 DEFINITION Homo sapiens cell death-inducing p53 target 1 (CDIP1), transcript variant 1, mRNA. ACCESSION NM_001199054 VERSION NM_001199054.1 GI:312261260 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2774) AUTHORS Brown-Endres,L., Schoenfeld,D., Tian,F., Kim,H.G., Namba,T., Munoz-Fontela,C., Mandinova,A., Aaronson,S.A. and Lee,S.W. TITLE Expression of the p53 target CDIP correlates with sensitivity to TNFalpha-induced apoptosis in cancer cells JOURNAL Cancer Res. 72 (9), 2373-2382 (2012) PUBMED 22549949 REMARK GeneRIF: CDIP expression correlates with sensitivity of cancer cells with TNFalpha, and CDIP seems to be a regulator of the p53-mediated death versus survival response of cells to TNFalpha. REFERENCE 2 (bases 1 to 2774) AUTHORS Brown,L., Ongusaha,P.P., Kim,H.G., Nuti,S., Mandinova,A., Lee,J.W., Khosravi-Far,R., Aaronson,S.A. and Lee,S.W. TITLE CDIP, a novel pro-apoptotic gene, regulates TNFalpha-mediated apoptosis in a p53-dependent manner JOURNAL EMBO J. 26 (14), 3410-3422 (2007) PUBMED 17599062 REMARK GeneRIF: These findings support a novel p53 --> CDIP --> TNF-alpha apoptotic pathway that directs apoptosis after exposure of cells to genotoxic stress. REFERENCE 3 (bases 1 to 2774) AUTHORS Girard,A., Sachidanandam,R., Hannon,G.J. and Carmell,M.A. TITLE A germline-specific class of small RNAs binds mammalian Piwi proteins JOURNAL Nature 442 (7099), 199-202 (2006) PUBMED 16751776 REFERENCE 4 (bases 1 to 2774) AUTHORS Bhalla,K., Eyre,H.J., Whitmore,S.A., Sutherland,G.R. and Callen,D.F. TITLE C16orf5, a novel proline-rich gene at 16p13.3, is highly expressed in the brain JOURNAL J. Hum. Genet. 44 (6), 383-387 (1999) PUBMED 10570909 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AL833853.1 and AC007606.8. Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). Variants 1 and 2 both encode the same isoform (a). Sequence Note: This RefSeq record was created from transcript and genomic sequence data to make the sequence consistent with the reference genome assembly. The genomic coordinates used for the transcript record were based on transcript alignments. ##Evidence-Data-START## Transcript exon combination :: AL833853.1, AF195661.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025081, ERS025082 [ECO:0000348] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-937 AL833853.1 1-937 938-2774 AC007606.8 59240-61076 c FEATURES Location/Qualifiers source 1..2774 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="16" /map="16p13.3" gene 1..2774 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /note="cell death-inducing p53 target 1" /db_xref="GeneID:29965" /db_xref="HGNC:13234" /db_xref="MIM:610503" exon 1..146 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /inference="alignment:Splign:1.39.8" variation 78 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /replace="c" /replace="g" /db_xref="dbSNP:863501" variation 141 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /replace="c" /replace="t" /db_xref="dbSNP:3992827" exon 147..236 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /inference="alignment:Splign:1.39.8" misc_feature 233..235 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /note="upstream in-frame stop codon" exon 237..335 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /inference="alignment:Splign:1.39.8" CDS 251..877 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /note="isoform a is encoded by transcript variant 1; LITAF-like protein; cell death inducing protein; transmembrane protein I1; cell death-inducing protein; cell death involved p53-target; lipopolysaccharide-induced tumor necrosis factor-alpha-like protein; cell death-inducing p53-target protein 1" /codon_start=1 /product="cell death-inducing p53-target protein 1 isoform a" /protein_id="NP_001185983.1" /db_xref="GI:312261261" /db_xref="CCDS:CCDS42114.1" /db_xref="GeneID:29965" /db_xref="HGNC:13234" /db_xref="MIM:610503" /translation="
MSSEPPPPYPGGPTAPLLEEKSGAPPTPGRSSPAVMQPPPGMPLPPADIGPPPYEPPGHPMPQPGFIPPHMSADGTYMPPGFYPPPGPHPPMGYYPPGPYTPGPYPGPGGHTATVLVPSGAATTVTVLQGEIFEGAPVQTVCPHCQQAITTKISYEIGLMNFVLGFFCCFMGCDLGCCLIPCLINDFKDVTHTCPSCKAYIYTYKRLC
" misc_feature 659..868 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /note="LITAF-like zinc ribbon domain; Region: zf-LITAF-like; pfam10601" /db_xref="CDD:204526" exon 336..491 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /inference="alignment:Splign:1.39.8" exon 492..765 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /inference="alignment:Splign:1.39.8" exon 766..2774 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /inference="alignment:Splign:1.39.8" STS 1209..1336 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /standard_name="SHGC-60771" /db_xref="UniSTS:77968" STS 1757..2018 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /standard_name="SHGC-60849" /db_xref="UniSTS:58310" variation 1856 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /replace="g" /replace="t" /db_xref="dbSNP:200555498" STS 1921..2094 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /standard_name="D16S2655" /db_xref="UniSTS:152395" variation 1974 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /replace="g" /replace="t" /db_xref="dbSNP:17137100" STS 2614..2719 /gene="CDIP1" /gene_synonym="C16orf5; CDIP; I1; LITAFL" /standard_name="SHGC-61112" /db_xref="UniSTS:51490" ORIGIN
ctctgggcggtggggtgggcggtgggttggggggtttcgttgtgcgcgcaaagccgcgcggggctgagggtcttgttctgccggcgcctgtccggacccgggcccctctccgctttcggccggcctcgggcaccgggcttctggagctcccggagccctgcctgttccctgtccatccaggccagcagctgaaggagcctcacctgcctcccttctctgagtagcacggatttgaggagaagcagcgaagatgtccagcgagcctccccctccttatcctgggggccccacagccccacttctggaagagaaaagtggagccccgcccaccccaggccgttcctccccagctgtgatgcagccccctccaggcatgccactgccccctgcggacattggccccccaccctatgagccgccgggtcacccaatgccccagcctggcttcatcccaccacacatgagtgcagatggcacctacatgcctccgggtttctaccctcctccaggcccccacccacccatgggctactaccccccagggccctacacgccagggccctaccctggccctgggggccacacagccacagtcctggtcccttcaggagctgccaccacggtgacagtgctgcagggagagatctttgagggagcgcctgtgcagacggtgtgtccccactgccagcaggccatcaccaccaagatctcctacgagattggcttgatgaatttcgtgctgggtttcttctgttgcttcatgggatgtgatctgggctgctgcctgatcccctgcctcatcaatgacttcaaggatgtgacgcacacatgccccagctgcaaagcctacatctacacgtacaagcgcctgtgctaacggagctgggactcgggactcccccgcctgtcagtctggccccctgtgctttgctccctgtgctcagtggtcactttcccgctcccacttggggctgggagccgtgccaccatcccctagaagtcctgtcctcttcaccctgccctacctgagccgctgactcttctggcaaaaattctgttgggatttaaggccaagggtcagtgggtggcagggggctgacaatgagcttgtgtgttgttggtctgcttggtgtgtgtgatcgggaagataagctgggaggggtctcctgctggggtcctgatgcctctgtttccaaacaaggtacaggttcagtccagactctttccccctgggaccaacagcagccagagcagttagccagttagtccccaggcctgtggccacaggcgtttctgacctgctgggccgagaatgggtaagttgtctggagtcaggtgggcccacgtaggacagggtcacaaagcctgggtttgtttctgggtactttgcgcctctggggtgctagaggtggggcatggtggctggaagtaaaactgccaactctggccctcagaactctcaggtatagaagcccaggatgtctaataccctgtcccagtgcccgagagctgcctggtgtcaggtagagaggacactgtacctgggtgaatgatcagaccctggtagctaagaaggaacttgtccctttgagtcagtgtgcagaccccctttcaggccatgcctctgtgaaccctgtattgctggggccggaaggagcccctgagcctagccccttcccgtctgccctgtgtcctcactgcgtgtgggtatgacctctgcctggtggctggtgtatcccaactgggcaagagatggcagagggtcccccttgtgggtgcgcttggatgtgcagagccttctccatggattttcttccctgtaagtgccgggcccctcaccccagctgacaggctgttgctgtgcctgctcacacctgctcctgcaggcacactgggctagggacgaggaaggagcagccacaagtggtagaactgccttggtggacaccagcctcgccctgtctttatttcctgaatggtttgtgaacttgctcacctggaccactgtatcctgccactgtccttcctggtctcgcactgccactgcatggcctcctgtcactgtgaatcgtggcccagtctcagtttgtagtttctcattaaattggccctttcactcccccgccctgggcctctgctctcttgcctggcttccttcttttttgagggaaagagggtggggctgcaggcagtctactggcaggacgggaggctgagtcctcagggtctcacaccctcagtgctgatgccatgccaactgcctgggacaacaccaacacgtaaggacctaattaaaccaaaccagagtcgggtgtagaccagccctgggatttccagctgtgactgggccagggcacacgttggtctcggcagtggctgtaaggtcaccttccttcctctgatgctggtttcaaccatctatatatggcatccacgcatgggatctgcaagctggagccctcctacccgcaggcttgagcacagcatcatccagccctggggaggcgcacccttaagcaacacagactgggctgaggctgacaggcagaagactaacagagcgcagtctgcacacgcaggttctgggcgacctctggccctggccatctctgcactaactcatctgaattatgaaggtggcagtcttggtcagtagtttaaagagtttccctactttttaaccctttttgaaataaaacttttacaggtagtagattcctattaataaaattatttaagttcatgtttctcttttagagaatgaattgtttaaa
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ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:29965 -> Molecular function: GO:0003674 [molecular_function] evidence: ND GeneID:29965 -> Biological process: GO:0006915 [apoptotic process] evidence: IGI GeneID:29965 -> Biological process: GO:0006917 [induction of apoptosis] evidence: IDA GeneID:29965 -> Biological process: GO:0033209 [tumor necrosis factor-mediated signaling pathway] evidence: IGI GeneID:29965 -> Biological process: GO:0042771 [intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator] evidence: IMP GeneID:29965 -> Cellular component: GO:0005634 [nucleus] evidence: IDA GeneID:29965 -> Cellular component: GO:0005634 [nucleus] evidence: NAS
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