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2024-04-19 16:25:51, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001168485 2805 bp mRNA linear PRI 17-APR-2013
DEFINITION Homo sapiens armadillo repeat containing, X-linked 5 (ARMCX5),
transcript variant 5, mRNA.
ACCESSION NM_001168485
VERSION NM_001168485.1 GI:274318376
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2805)
AUTHORS Ross,M.T., Grafham,D.V., Coffey,A.J., Scherer,S., McLay,K.,
Muzny,D., Platzer,M., Howell,G.R., Burrows,C., Bird,C.P.,
Frankish,A., Lovell,F.L., Howe,K.L., Ashurst,J.L., Fulton,R.S.,
Sudbrak,R., Wen,G., Jones,M.C., Hurles,M.E., Andrews,T.D.,
Scott,C.E., Searle,S., Ramser,J., Whittaker,A., Deadman,R.,
Carter,N.P., Hunt,S.E., Chen,R., Cree,A., Gunaratne,P., Havlak,P.,
Hodgson,A., Metzker,M.L., Richards,S., Scott,G., Steffen,D.,
Sodergren,E., Wheeler,D.A., Worley,K.C., Ainscough,R.,
Ambrose,K.D., Ansari-Lari,M.A., Aradhya,S., Ashwell,R.I.,
Babbage,A.K., Bagguley,C.L., Ballabio,A., Banerjee,R., Barker,G.E.,
Barlow,K.F., Barrett,I.P., Bates,K.N., Beare,D.M., Beasley,H.,
Beasley,O., Beck,A., Bethel,G., Blechschmidt,K., Brady,N.,
Bray-Allen,S., Bridgeman,A.M., Brown,A.J., Brown,M.J., Bonnin,D.,
Bruford,E.A., Buhay,C., Burch,P., Burford,D., Burgess,J.,
Burrill,W., Burton,J., Bye,J.M., Carder,C., Carrel,L., Chako,J.,
Chapman,J.C., Chavez,D., Chen,E., Chen,G., Chen,Y., Chen,Z.,
Chinault,C., Ciccodicola,A., Clark,S.Y., Clarke,G., Clee,C.M.,
Clegg,S., Clerc-Blankenburg,K., Clifford,K., Cobley,V., Cole,C.G.,
Conquer,J.S., Corby,N., Connor,R.E., David,R., Davies,J., Davis,C.,
Davis,J., Delgado,O., Deshazo,D., Dhami,P., Ding,Y., Dinh,H.,
Dodsworth,S., Draper,H., Dugan-Rocha,S., Dunham,A., Dunn,M.,
Durbin,K.J., Dutta,I., Eades,T., Ellwood,M., Emery-Cohen,A.,
Errington,H., Evans,K.L., Faulkner,L., Francis,F., Frankland,J.,
Fraser,A.E., Galgoczy,P., Gilbert,J., Gill,R., Glockner,G.,
Gregory,S.G., Gribble,S., Griffiths,C., Grocock,R., Gu,Y.,
Gwilliam,R., Hamilton,C., Hart,E.A., Hawes,A., Heath,P.D.,
Heitmann,K., Hennig,S., Hernandez,J., Hinzmann,B., Ho,S., Hoffs,M.,
Howden,P.J., Huckle,E.J., Hume,J., Hunt,P.J., Hunt,A.R.,
Isherwood,J., Jacob,L., Johnson,D., Jones,S., de Jong,P.J.,
Joseph,S.S., Keenan,S., Kelly,S., Kershaw,J.K., Khan,Z.,
Kioschis,P., Klages,S., Knights,A.J., Kosiura,A., Kovar-Smith,C.,
Laird,G.K., Langford,C., Lawlor,S., Leversha,M., Lewis,L., Liu,W.,
Lloyd,C., Lloyd,D.M., Loulseged,H., Loveland,J.E., Lovell,J.D.,
Lozado,R., Lu,J., Lyne,R., Ma,J., Maheshwari,M., Matthews,L.H.,
McDowall,J., McLaren,S., McMurray,A., Meidl,P., Meitinger,T.,
Milne,S., Miner,G., Mistry,S.L., Morgan,M., Morris,S., Muller,I.,
Mullikin,J.C., Nguyen,N., Nordsiek,G., Nyakatura,G., O'Dell,C.N.,
Okwuonu,G., Palmer,S., Pandian,R., Parker,D., Parrish,J.,
Pasternak,S., Patel,D., Pearce,A.V., Pearson,D.M., Pelan,S.E.,
Perez,L., Porter,K.M., Ramsey,Y., Reichwald,K., Rhodes,S.,
Ridler,K.A., Schlessinger,D., Schueler,M.G., Sehra,H.K.,
Shaw-Smith,C., Shen,H., Sheridan,E.M., Shownkeen,R., Skuce,C.D.,
Smith,M.L., Sotheran,E.C., Steingruber,H.E., Steward,C.A.,
Storey,R., Swann,R.M., Swarbreck,D., Tabor,P.E., Taudien,S.,
Taylor,T., Teague,B., Thomas,K., Thorpe,A., Timms,K., Tracey,A.,
Trevanion,S., Tromans,A.C., d'Urso,M., Verduzco,D., Villasana,D.,
Waldron,L., Wall,M., Wang,Q., Warren,J., Warry,G.L., Wei,X.,
West,A., Whitehead,S.L., Whiteley,M.N., Wilkinson,J.E.,
Willey,D.L., Williams,G., Williams,L., Williamson,A.,
Williamson,H., Wilming,L., Woodmansey,R.L., Wray,P.W., Yen,J.,
Zhang,J., Zhou,J., Zoghbi,H., Zorilla,S., Buck,D., Reinhardt,R.,
Poustka,A., Rosenthal,A., Lehrach,H., Meindl,A., Minx,P.J.,
Hillier,L.W., Willard,H.F., Wilson,R.K., Waterston,R.H., Rice,C.M.,
Vaudin,M., Coulson,A., Nelson,D.L., Weinstock,G., Sulston,J.E.,
Durbin,R., Hubbard,T., Gibbs,R.A., Beck,S., Rogers,J. and
Bentley,D.R.
TITLE The DNA sequence of the human X chromosome
JOURNAL Nature 434 (7031), 325-337 (2005)
PUBMED 15772651
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AK096692.1, DN991222.1 and BC064983.1.
Transcript Variant: This variant (5) differs in the 5' UTR compared
to variant 1. Variants 1-6 all encode the same protein.
##Evidence-Data-START##
Transcript exon combination :: BY798721.2 [ECO:0000332]
RNAseq introns :: single sample supports all introns
ERS025084, ERS025088 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-325 AK096692.1 1-325
326-735 DN991222.1 43-452
736-2805 BC064983.1 894-2963
FEATURES Location/Qualifiers
source 1..2805
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="X"
/map="Xq22.1-q22.3"
gene 1..2805
/gene="ARMCX5"
/note="armadillo repeat containing, X-linked 5"
/db_xref="GeneID:64860"
/db_xref="HGNC:25772"
exon 1..99
/gene="ARMCX5"
/inference="alignment:Splign:1.39.8"
variation 95
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:186923749"
exon 100..324
/gene="ARMCX5"
/inference="alignment:Splign:1.39.8"
variation 219
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:143986897"
variation 233
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:191379211"
exon 325..460
/gene="ARMCX5"
/inference="alignment:Splign:1.39.8"
variation 423
/gene="ARMCX5"
/replace="a"
/replace="t"
/db_xref="dbSNP:113654543"
exon 461..506
/gene="ARMCX5"
/inference="alignment:Splign:1.39.8"
exon 507..2786
/gene="ARMCX5"
/inference="alignment:Splign:1.39.8"
variation 546
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:180686160"
variation 629
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:187431863"
variation 635
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:150456888"
variation 727
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:371888083"
misc_feature 757..759
/gene="ARMCX5"
/note="upstream in-frame stop codon"
CDS 769..2445
/gene="ARMCX5"
/codon_start=1
/product="armadillo repeat-containing X-linked protein 5"
/protein_id="NP_001161957.1"
/db_xref="GI:274318377"
/db_xref="CCDS:CCDS14500.1"
/db_xref="GeneID:64860"
/db_xref="HGNC:25772"
/translation="
MVDSGTEARARGKAEAGLQDGISGPATARVNGKTQAEAVAEAELKTESVTQAKAGDGAMTRTHTVTYREAMAVTREVIKVEDTTKTRVMVETKTKPLAERSIVPQTKSKAMPMSRVSTVTKSEVKVVAVIEANIRSYAKSHDKANTGSRPDRREETSIGMKSSDEDEENICSWFWTGEEPSVGSWFWPEEETSLQVYKPLPKIQEKPKPTHKPTLTIKQKVIAWSRARYIVLVPVEGGEQSLPPEGNWTLVETLIETPLGIRPLTKIPPYHGPYYQTLAEIKKQIRQREKYGPNPKACHCKSRGFSLEPKEFDKLVALLKLTKDPFIHEIATMIMGISPAYPFTQDIIHDVGITVMIENLVNNPNVKEHPGALSMVDDSSESSEEPKSGESYIHQVCKGIISCPLNSPVQLAGLKLLGHLSIKFEDHYVITSYIPDFLTLLNKGSVKTKFYVLKVFSCLSKNHANTRELISAKVLSSLVAPFNKNESKANILNIIEIFENINFQFKTKAKLFTKEKFTKSELISIFQEAKQFGQKLQDLAEHSDPEVRDKVIRLILKL
"
misc_feature 1660..2424
/gene="ARMCX5"
/note="Armadillo-like; Region: Arm_2; pfam04826"
/db_xref="CDD:191105"
misc_feature 1666..1785
/gene="ARMCX5"
/experiment="experimental evidence, no additional details
recorded"
/note="propagated from UniProtKB/Swiss-Prot (Q6P1M9.1);
Region: ARM 1"
misc_feature 2032..2151
/gene="ARMCX5"
/experiment="experimental evidence, no additional details
recorded"
/note="propagated from UniProtKB/Swiss-Prot (Q6P1M9.1);
Region: ARM 2"
misc_feature 2155..2277
/gene="ARMCX5"
/experiment="experimental evidence, no additional details
recorded"
/note="propagated from UniProtKB/Swiss-Prot (Q6P1M9.1);
Region: ARM 3"
variation 778
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:376521671"
variation 794
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:147081834"
variation 924
/gene="ARMCX5"
/replace="a"
/replace="c"
/db_xref="dbSNP:17854978"
variation 963
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:369765869"
variation 1019
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:138502487"
variation 1026
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:142005126"
variation 1066
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:12013441"
variation 1067
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:112989637"
variation 1073
/gene="ARMCX5"
/replace="g"
/replace="t"
/db_xref="dbSNP:374726828"
variation 1077
/gene="ARMCX5"
/replace="g"
/replace="t"
/db_xref="dbSNP:191839863"
variation 1117
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:112318694"
variation 1123
/gene="ARMCX5"
/replace="g"
/replace="t"
/db_xref="dbSNP:41307379"
variation 1224
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:150705414"
variation 1234
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:35450554"
variation 1240
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:369047406"
variation 1245
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:149447145"
variation 1257
/gene="ARMCX5"
/replace="g"
/replace="t"
/db_xref="dbSNP:201641747"
variation 1276
/gene="ARMCX5"
/replace="a"
/replace="t"
/db_xref="dbSNP:375887903"
variation 1358
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:370774795"
variation 1377
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:55673173"
variation 1449
/gene="ARMCX5"
/replace="c"
/replace="g"
/db_xref="dbSNP:146343503"
variation 1457
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:373013040"
variation 1496
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:139851001"
variation 1514
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:377411016"
variation 1522
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:375842205"
variation 1545
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:371062313"
variation 1567
/gene="ARMCX5"
/replace="a"
/replace="t"
/db_xref="dbSNP:143305512"
variation 1597
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:139067925"
variation 1652
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:376270648"
variation 1685
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:377359903"
variation 1700
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:113918916"
variation 1766
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:370182133"
variation 1902
/gene="ARMCX5"
/replace="c"
/replace="g"
/db_xref="dbSNP:200145435"
variation 1917
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:374899022"
variation 1938
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:149355875"
variation 1953
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:148467545"
variation 1994
/gene="ARMCX5"
/replace="g"
/replace="t"
/db_xref="dbSNP:142617709"
variation 2007
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:35168882"
variation 2116
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:201473675"
variation 2131
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:186882890"
variation 2156
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:140890801"
variation 2169
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:148274740"
variation 2324
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:367941873"
variation 2347
/gene="ARMCX5"
/replace="c"
/replace="g"
/db_xref="dbSNP:200184974"
variation 2403
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:35897621"
variation 2457
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:374272924"
STS 2570..2713
/gene="ARMCX5"
/standard_name="A002R08"
/db_xref="UniSTS:60223"
polyA_signal 2757..2762
/gene="ARMCX5"
polyA_site 2786
/gene="ARMCX5"
ORIGIN
gaacttcgaaagactggaacacttccgcctgtcaggccagaagagatttcctgacaccacagctggaaacccatgtgcatttcagttcaggaaagaatgcgccgttttccctatatccggaattcgtccctgcgcattccaatacctgaagcggccacagggtacaggacagggagccctccgacagaaaagagtcgcggcgctaaacaaagcctgatatcactccgcttccataagccggatccccataaactacgctctagctcctcccactgccgttgtgggtaacgcggacgtggaagaacctcgtctgcggaggaaaaggtgccgagtcaatccccatacacagccgccgccattgcctcgagtccttgtgtctgactgtctgttcctgctgctgtatgacacagcacctcgaggcaaggaaataagaaaactgcctctgatccaagcagagaaggtctgcctgtagatctgctgtagggcttgtcaccattggaagcaaggtcctacttcagtggcagatctggtggccttggagtggctgaagaccaccaccctccacagggctgggcccatgcacagccatccttccctaccttgagtgagcttcctctgcatgttttctatatcactggcagagcctgtagttggaaaggggacagagtgactactggactttgtgtgaaaacaccaaccgggacaaaacttcagtcaaggctgagacgggtgggggtatataacttgtccttacgttaaacttggaacatggttgactctgggacagaagcaagggctagaggaaaggctgaggctggcctgcaagatggaatcagtggtcctgccactgctagagtgaatggtaaaacccaggccgaggcagtggctgaggcagaactgaaaacagaatcagtgacccaggccaaagctggtgatggagcaatgaccaggacacatacagtgacctacagggaggctatggctgtgacaagggaagtgatcaaggtggaagatacaactaagactagagtcatggttgagactaagacaaaacccctggcagaacgcagtatagtgccacaaaccaagtcaaaggccatgcctatgtctagggtcagtactgtaaccaagtctgaagtcaaggttgttgctgtcattgaggcaaatattaggtcctatgccaagtcacatgataaggccaatactgggtccagacctgacagaagggaagagaccagcattgggatgaaatccagtgatgaggatgaagaaaatatatgctcctggttctggactggagaagagcctagtgtagggtcctggttctggcctgaagaagagacctctcttcaagtttataagcccctacctaagatccaggaaaagcccaagcccacacacaaacccacacttactataaaacaaaaggtaatagcatggtcaagggccaggtatattgtcctagttccagttgaaggaggggagcaatccttgcctccagaaggaaactggaccctggttgagaccttgattgaaactcctctggggattcgacctttgaccaagatcccaccttatcatgggccttattaccagaccttagctgagatcaaaaaacagattaggcaaagggaaaagtatgggcctaatccgaaggcctgccactgcaaatcacgtggctttagtttagagcctaaagagtttgataaacttgttgccctccttaagttaactaaggatcctttcattcatgaaatagctacaatgataatgggcatcagtcctgcttatccatttactcaagatataattcatgatgtaggtattactgttatgattgaaaacttggtcaataatcccaatgttaaagaacaccctggagctttaagtatggtggatgacagctctgagtcttccgaagaaccaaaatcaggggagtcatatatacatcaagtttgtaaaggcataatctcttgccccttgaactcccctgtgcagctggctggactgaaattactagggcacttgagtataaaatttgaagatcactatgtgattaccagttatattccagatttcctcaccttgttaaacaagggaagtgtcaaaaccaagttttatgttttaaaagtgttttcgtgtttgtctaaaaatcacgccaatacaagagaattgatcagtgccaaagtactgtcatcattggttgcaccctttaacaagaatgagtcaaaggccaatattcttaatattattgaaatatttgagaatataaattttcagttcaaaacaaaggcaaagctatttaccaaggaaaagttcactaaatctgagcttatttcaatattccaggaagcaaaacagtttggtcagaaactccaagacttagcagagcacagtgatcccgaagtgagagataaagtcatacgattaatactaaaactctgaatacccctctgttctcataaagcctcaaacagttttttggagttgcaatatgaaaccaatgcatattgtaattataaattcaatacttatgttttccatgttgattgagggaggcaattttatggataccaattaatcttgagatcctgaacatgtgctgatttttattgtgctatatagtatataaattgagatatttttggtatttctgcaacgtgacctgataatgaatctattcatcctgagtaagctatacttctgtgctttatattgatatgtgtattcttttgagattttatttacatgttgttaataaagttgcatgctaaaactggtgaaaaaaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
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