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2024-04-19 18:31:01, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001168479 2924 bp mRNA linear PRI 17-APR-2013
DEFINITION Homo sapiens armadillo repeat containing, X-linked 5 (ARMCX5),
transcript variant 1, mRNA.
ACCESSION NM_001168479
VERSION NM_001168479.1 GI:274318366
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2924)
AUTHORS Ross,M.T., Grafham,D.V., Coffey,A.J., Scherer,S., McLay,K.,
Muzny,D., Platzer,M., Howell,G.R., Burrows,C., Bird,C.P.,
Frankish,A., Lovell,F.L., Howe,K.L., Ashurst,J.L., Fulton,R.S.,
Sudbrak,R., Wen,G., Jones,M.C., Hurles,M.E., Andrews,T.D.,
Scott,C.E., Searle,S., Ramser,J., Whittaker,A., Deadman,R.,
Carter,N.P., Hunt,S.E., Chen,R., Cree,A., Gunaratne,P., Havlak,P.,
Hodgson,A., Metzker,M.L., Richards,S., Scott,G., Steffen,D.,
Sodergren,E., Wheeler,D.A., Worley,K.C., Ainscough,R.,
Ambrose,K.D., Ansari-Lari,M.A., Aradhya,S., Ashwell,R.I.,
Babbage,A.K., Bagguley,C.L., Ballabio,A., Banerjee,R., Barker,G.E.,
Barlow,K.F., Barrett,I.P., Bates,K.N., Beare,D.M., Beasley,H.,
Beasley,O., Beck,A., Bethel,G., Blechschmidt,K., Brady,N.,
Bray-Allen,S., Bridgeman,A.M., Brown,A.J., Brown,M.J., Bonnin,D.,
Bruford,E.A., Buhay,C., Burch,P., Burford,D., Burgess,J.,
Burrill,W., Burton,J., Bye,J.M., Carder,C., Carrel,L., Chako,J.,
Chapman,J.C., Chavez,D., Chen,E., Chen,G., Chen,Y., Chen,Z.,
Chinault,C., Ciccodicola,A., Clark,S.Y., Clarke,G., Clee,C.M.,
Clegg,S., Clerc-Blankenburg,K., Clifford,K., Cobley,V., Cole,C.G.,
Conquer,J.S., Corby,N., Connor,R.E., David,R., Davies,J., Davis,C.,
Davis,J., Delgado,O., Deshazo,D., Dhami,P., Ding,Y., Dinh,H.,
Dodsworth,S., Draper,H., Dugan-Rocha,S., Dunham,A., Dunn,M.,
Durbin,K.J., Dutta,I., Eades,T., Ellwood,M., Emery-Cohen,A.,
Errington,H., Evans,K.L., Faulkner,L., Francis,F., Frankland,J.,
Fraser,A.E., Galgoczy,P., Gilbert,J., Gill,R., Glockner,G.,
Gregory,S.G., Gribble,S., Griffiths,C., Grocock,R., Gu,Y.,
Gwilliam,R., Hamilton,C., Hart,E.A., Hawes,A., Heath,P.D.,
Heitmann,K., Hennig,S., Hernandez,J., Hinzmann,B., Ho,S., Hoffs,M.,
Howden,P.J., Huckle,E.J., Hume,J., Hunt,P.J., Hunt,A.R.,
Isherwood,J., Jacob,L., Johnson,D., Jones,S., de Jong,P.J.,
Joseph,S.S., Keenan,S., Kelly,S., Kershaw,J.K., Khan,Z.,
Kioschis,P., Klages,S., Knights,A.J., Kosiura,A., Kovar-Smith,C.,
Laird,G.K., Langford,C., Lawlor,S., Leversha,M., Lewis,L., Liu,W.,
Lloyd,C., Lloyd,D.M., Loulseged,H., Loveland,J.E., Lovell,J.D.,
Lozado,R., Lu,J., Lyne,R., Ma,J., Maheshwari,M., Matthews,L.H.,
McDowall,J., McLaren,S., McMurray,A., Meidl,P., Meitinger,T.,
Milne,S., Miner,G., Mistry,S.L., Morgan,M., Morris,S., Muller,I.,
Mullikin,J.C., Nguyen,N., Nordsiek,G., Nyakatura,G., O'Dell,C.N.,
Okwuonu,G., Palmer,S., Pandian,R., Parker,D., Parrish,J.,
Pasternak,S., Patel,D., Pearce,A.V., Pearson,D.M., Pelan,S.E.,
Perez,L., Porter,K.M., Ramsey,Y., Reichwald,K., Rhodes,S.,
Ridler,K.A., Schlessinger,D., Schueler,M.G., Sehra,H.K.,
Shaw-Smith,C., Shen,H., Sheridan,E.M., Shownkeen,R., Skuce,C.D.,
Smith,M.L., Sotheran,E.C., Steingruber,H.E., Steward,C.A.,
Storey,R., Swann,R.M., Swarbreck,D., Tabor,P.E., Taudien,S.,
Taylor,T., Teague,B., Thomas,K., Thorpe,A., Timms,K., Tracey,A.,
Trevanion,S., Tromans,A.C., d'Urso,M., Verduzco,D., Villasana,D.,
Waldron,L., Wall,M., Wang,Q., Warren,J., Warry,G.L., Wei,X.,
West,A., Whitehead,S.L., Whiteley,M.N., Wilkinson,J.E.,
Willey,D.L., Williams,G., Williams,L., Williamson,A.,
Williamson,H., Wilming,L., Woodmansey,R.L., Wray,P.W., Yen,J.,
Zhang,J., Zhou,J., Zoghbi,H., Zorilla,S., Buck,D., Reinhardt,R.,
Poustka,A., Rosenthal,A., Lehrach,H., Meindl,A., Minx,P.J.,
Hillier,L.W., Willard,H.F., Wilson,R.K., Waterston,R.H., Rice,C.M.,
Vaudin,M., Coulson,A., Nelson,D.L., Weinstock,G., Sulston,J.E.,
Durbin,R., Hubbard,T., Gibbs,R.A., Beck,S., Rogers,J. and
Bentley,D.R.
TITLE The DNA sequence of the human X chromosome
JOURNAL Nature 434 (7031), 325-337 (2005)
PUBMED 15772651
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AK096692.1, BI765968.1 and BC000792.1.
Transcript Variant: This variant (1) represents the longest
transcript. Variants 1-6 all encode the same protein.
##Evidence-Data-START##
Transcript exon combination :: BI765968.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
ERS025084, ERS025088 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-112 AK096692.1 1-112
113-510 BI765968.1 65-462
511-2901 AK096692.1 505-2895
2902-2924 BC000792.1 1192-1214
FEATURES Location/Qualifiers
source 1..2924
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="X"
/map="Xq22.1-q22.3"
gene 1..2924
/gene="ARMCX5"
/note="armadillo repeat containing, X-linked 5"
/db_xref="GeneID:64860"
/db_xref="HGNC:25772"
exon 1..99
/gene="ARMCX5"
/inference="alignment:Splign:1.39.8"
variation 95
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:186923749"
exon 100..324
/gene="ARMCX5"
/inference="alignment:Splign:1.39.8"
variation 219
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:143986897"
variation 233
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:191379211"
exon 325..466
/gene="ARMCX5"
/inference="alignment:Splign:1.39.8"
variation 429
/gene="ARMCX5"
/replace="a"
/replace="t"
/db_xref="dbSNP:113654543"
exon 467..579
/gene="ARMCX5"
/inference="alignment:Splign:1.39.8"
exon 580..625
/gene="ARMCX5"
/inference="alignment:Splign:1.39.8"
exon 626..2905
/gene="ARMCX5"
/inference="alignment:Splign:1.39.8"
variation 665
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:180686160"
variation 748
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:187431863"
variation 754
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:150456888"
variation 846
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:371888083"
misc_feature 876..878
/gene="ARMCX5"
/note="upstream in-frame stop codon"
CDS 888..2564
/gene="ARMCX5"
/codon_start=1
/product="armadillo repeat-containing X-linked protein 5"
/protein_id="NP_001161951.1"
/db_xref="GI:274318367"
/db_xref="CCDS:CCDS14500.1"
/db_xref="GeneID:64860"
/db_xref="HGNC:25772"
/translation="
MVDSGTEARARGKAEAGLQDGISGPATARVNGKTQAEAVAEAELKTESVTQAKAGDGAMTRTHTVTYREAMAVTREVIKVEDTTKTRVMVETKTKPLAERSIVPQTKSKAMPMSRVSTVTKSEVKVVAVIEANIRSYAKSHDKANTGSRPDRREETSIGMKSSDEDEENICSWFWTGEEPSVGSWFWPEEETSLQVYKPLPKIQEKPKPTHKPTLTIKQKVIAWSRARYIVLVPVEGGEQSLPPEGNWTLVETLIETPLGIRPLTKIPPYHGPYYQTLAEIKKQIRQREKYGPNPKACHCKSRGFSLEPKEFDKLVALLKLTKDPFIHEIATMIMGISPAYPFTQDIIHDVGITVMIENLVNNPNVKEHPGALSMVDDSSESSEEPKSGESYIHQVCKGIISCPLNSPVQLAGLKLLGHLSIKFEDHYVITSYIPDFLTLLNKGSVKTKFYVLKVFSCLSKNHANTRELISAKVLSSLVAPFNKNESKANILNIIEIFENINFQFKTKAKLFTKEKFTKSELISIFQEAKQFGQKLQDLAEHSDPEVRDKVIRLILKL
"
misc_feature 1779..2543
/gene="ARMCX5"
/note="Armadillo-like; Region: Arm_2; pfam04826"
/db_xref="CDD:191105"
misc_feature 1785..1904
/gene="ARMCX5"
/experiment="experimental evidence, no additional details
recorded"
/note="propagated from UniProtKB/Swiss-Prot (Q6P1M9.1);
Region: ARM 1"
misc_feature 2151..2270
/gene="ARMCX5"
/experiment="experimental evidence, no additional details
recorded"
/note="propagated from UniProtKB/Swiss-Prot (Q6P1M9.1);
Region: ARM 2"
misc_feature 2274..2396
/gene="ARMCX5"
/experiment="experimental evidence, no additional details
recorded"
/note="propagated from UniProtKB/Swiss-Prot (Q6P1M9.1);
Region: ARM 3"
variation 897
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:376521671"
variation 913
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:147081834"
variation 1043
/gene="ARMCX5"
/replace="a"
/replace="c"
/db_xref="dbSNP:17854978"
variation 1082
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:369765869"
variation 1138
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:138502487"
variation 1145
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:142005126"
variation 1185
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:12013441"
variation 1186
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:112989637"
variation 1192
/gene="ARMCX5"
/replace="g"
/replace="t"
/db_xref="dbSNP:374726828"
variation 1196
/gene="ARMCX5"
/replace="g"
/replace="t"
/db_xref="dbSNP:191839863"
variation 1236
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:112318694"
variation 1242
/gene="ARMCX5"
/replace="g"
/replace="t"
/db_xref="dbSNP:41307379"
variation 1343
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:150705414"
variation 1353
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:35450554"
variation 1359
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:369047406"
variation 1364
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:149447145"
variation 1376
/gene="ARMCX5"
/replace="g"
/replace="t"
/db_xref="dbSNP:201641747"
variation 1395
/gene="ARMCX5"
/replace="a"
/replace="t"
/db_xref="dbSNP:375887903"
variation 1477
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:370774795"
variation 1496
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:55673173"
variation 1568
/gene="ARMCX5"
/replace="c"
/replace="g"
/db_xref="dbSNP:146343503"
variation 1576
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:373013040"
variation 1615
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:139851001"
variation 1633
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:377411016"
variation 1641
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:375842205"
variation 1664
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:371062313"
variation 1686
/gene="ARMCX5"
/replace="a"
/replace="t"
/db_xref="dbSNP:143305512"
variation 1716
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:139067925"
variation 1771
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:376270648"
variation 1804
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:377359903"
variation 1819
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:113918916"
variation 1885
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:370182133"
variation 2021
/gene="ARMCX5"
/replace="c"
/replace="g"
/db_xref="dbSNP:200145435"
variation 2036
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:374899022"
variation 2057
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:149355875"
variation 2072
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:148467545"
variation 2113
/gene="ARMCX5"
/replace="g"
/replace="t"
/db_xref="dbSNP:142617709"
variation 2126
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:35168882"
variation 2235
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:201473675"
variation 2250
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:186882890"
variation 2275
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:140890801"
variation 2288
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:148274740"
variation 2443
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:367941873"
variation 2466
/gene="ARMCX5"
/replace="c"
/replace="g"
/db_xref="dbSNP:200184974"
variation 2522
/gene="ARMCX5"
/replace="a"
/replace="g"
/db_xref="dbSNP:35897621"
variation 2576
/gene="ARMCX5"
/replace="c"
/replace="t"
/db_xref="dbSNP:374272924"
STS 2689..2832
/gene="ARMCX5"
/standard_name="A002R08"
/db_xref="UniSTS:60223"
polyA_signal 2876..2881
/gene="ARMCX5"
polyA_site 2905
/gene="ARMCX5"
ORIGIN
gaacttcgaaagactggaacacttccgcctgtcaggccagaagagatttcctgacaccacagctggaaacccatgtgcatttcagttcaggaaagaatgcgccgttttccctatatccggaattcgtccctgcgcattccaatacctgaagcggccacagggtacaggacagggagccctccgacagaaaagagtcgcggcgctaaacaaagcctgatatcactccgcttccataagccggatccccataaactacgctctagctcctcccactgccgttgtgggtaacgcggacgtggaagaacctcgtctgcggaggaaaagtcccaggtgccgagtcaatccccatacacagccgccgccattgcctcgagtccttgtgtctgactgtctgttcctgctgctgtatgacacagcacctcgaggcaaggaaataagaaaactgcctctgatccaagcagagaaggtagatctgtccccaggtctgtggaactgtcagttgtgaagttttgtaaaatggtcacccaacttaaaactaggaaattacgaagaagagaaaattgccctgtatctgttaaggtctgcctgtagatctgctgtagggcttgtcaccattggaagcaaggtcctacttcagtggcagatctggtggccttggagtggctgaagaccaccaccctccacagggctgggcccatgcacagccatccttccctaccttgagtgagcttcctctgcatgttttctatatcactggcagagcctgtagttggaaaggggacagagtgactactggactttgtgtgaaaacaccaaccgggacaaaacttcagtcaaggctgagacgggtgggggtatataacttgtccttacgttaaacttggaacatggttgactctgggacagaagcaagggctagaggaaaggctgaggctggcctgcaagatggaatcagtggtcctgccactgctagagtgaatggtaaaacccaggccgaggcagtggctgaggcagaactgaaaacagaatcagtgacccaggccaaagctggtgatggagcaatgaccaggacacatacagtgacctacagggaggctatggctgtgacaagggaagtgatcaaggtggaagatacaactaagactagagtcatggttgagactaagacaaaacccctggcagaacgcagtatagtgccacaaaccaagtcaaaggccatgcctatgtctagggtcagtactgtaaccaagtctgaagtcaaggttgttgctgtcattgaggcaaatattaggtcctatgccaagtcacatgataaggccaatactgggtccagacctgacagaagggaagagaccagcattgggatgaaatccagtgatgaggatgaagaaaatatatgctcctggttctggactggagaagagcctagtgtagggtcctggttctggcctgaagaagagacctctcttcaagtttataagcccctacctaagatccaggaaaagcccaagcccacacacaaacccacacttactataaaacaaaaggtaatagcatggtcaagggccaggtatattgtcctagttccagttgaaggaggggagcaatccttgcctccagaaggaaactggaccctggttgagaccttgattgaaactcctctggggattcgacctttgaccaagatcccaccttatcatgggccttattaccagaccttagctgagatcaaaaaacagattaggcaaagggaaaagtatgggcctaatccgaaggcctgccactgcaaatcacgtggctttagtttagagcctaaagagtttgataaacttgttgccctccttaagttaactaaggatcctttcattcatgaaatagctacaatgataatgggcatcagtcctgcttatccatttactcaagatataattcatgatgtaggtattactgttatgattgaaaacttggtcaataatcccaatgttaaagaacaccctggagctttaagtatggtggatgacagctctgagtcttccgaagaaccaaaatcaggggagtcatatatacatcaagtttgtaaaggcataatctcttgccccttgaactcccctgtgcagctggctggactgaaattactagggcacttgagtataaaatttgaagatcactatgtgattaccagttatattccagatttcctcaccttgttaaacaagggaagtgtcaaaaccaagttttatgttttaaaagtgttttcgtgtttgtctaaaaatcacgccaatacaagagaattgatcagtgccaaagtactgtcatcattggttgcaccctttaacaagaatgagtcaaaggccaatattcttaatattattgaaatatttgagaatataaattttcagttcaaaacaaaggcaaagctatttaccaaggaaaagttcactaaatctgagcttatttcaatattccaggaagcaaaacagtttggtcagaaactccaagacttagcagagcacagtgatcccgaagtgagagataaagtcatacgattaatactaaaactctgaatacccctctgttctcataaagcctcaaacagttttttggagttgcaatatgaaaccaatgcatattgtaattataaattcaatacttatgttttccatgttgattgagggaggcaattttatggataccaattaatcttgagatcctgaacatgtgctgatttttattgtgctatatagtatataaattgagatatttttggtatttctgcaacgtgacctgataatgaatctattcatcctgagtaagctatacttctgtgctttatattgatatgtgtattcttttgagattttatttacatgttgttaataaagttgcatgctaaaactggtgaaaaaaaaaaaaaaaaaaaaaaa
//
by
@meso_cacase at
DBCLS
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