2024-04-19 20:52:03, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001168323 1297 bp mRNA linear PRI 17-APR-2013 DEFINITION Homo sapiens CD300 molecule-like family member g (CD300LG), transcript variant 3, mRNA. ACCESSION NM_001168323 VERSION NM_001168323.1 GI:270132795 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1297) AUTHORS Clark,G.J., Ju,X., Tate,C. and Hart,D.N. TITLE The CD300 family of molecules are evolutionarily significant regulators of leukocyte functions JOURNAL Trends Immunol. 30 (5), 209-217 (2009) PUBMED 19359216 REMARK Review article REFERENCE 2 (bases 1 to 1297) AUTHORS Clark,G.J., Ju,X., Azlan,M., Tate,C., Ding,Y. and Hart,D.N. TITLE The CD300 molecules regulate monocyte and dendritic cell functions JOURNAL Immunobiology 214 (9-10), 730-736 (2009) PUBMED 19592130 REMARK Review article REFERENCE 3 (bases 1 to 1297) AUTHORS Lamesch,P., Li,N., Milstein,S., Fan,C., Hao,T., Szabo,G., Hu,Z., Venkatesan,K., Bethel,G., Martin,P., Rogers,J., Lawlor,S., McLaren,S., Dricot,A., Borick,H., Cusick,M.E., Vandenhaute,J., Dunham,I., Hill,D.E. and Vidal,M. TITLE hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes JOURNAL Genomics 89 (3), 307-315 (2007) PUBMED 17207965 REFERENCE 4 (bases 1 to 1297) AUTHORS Takatsu,H., Hase,K., Ohmae,M., Ohshima,S., Hashimoto,K., Taniura,N., Yamamoto,A. and Ohno,H. TITLE CD300 antigen like family member G: A novel Ig receptor like protein exclusively expressed on capillary endothelium JOURNAL Biochem. Biophys. Res. Commun. 348 (1), 183-191 (2006) PUBMED 16876123 REFERENCE 5 (bases 1 to 1297) AUTHORS Umemoto,E., Tanaka,T., Kanda,H., Jin,S., Tohya,K., Otani,K., Matsutani,T., Matsumoto,M., Ebisuno,Y., Jang,M.H., Fukuda,M., Hirata,T. and Miyasaka,M. TITLE Nepmucin, a novel HEV sialomucin, mediates L-selectin-dependent lymphocyte rolling and promotes lymphocyte adhesion under flow JOURNAL J. Exp. Med. 203 (6), 1603-1614 (2006) PUBMED 16754720 REFERENCE 6 (bases 1 to 1297) AUTHORS Zhang,Z. and Henzel,W.J. TITLE Signal peptide prediction based on analysis of experimentally verified cleavage sites JOURNAL Protein Sci. 13 (10), 2819-2824 (2004) PUBMED 15340161 REFERENCE 7 (bases 1 to 1297) AUTHORS Clark,H.F., Gurney,A.L., Abaya,E., Baker,K., Baldwin,D., Brush,J., Chen,J., Chow,B., Chui,C., Crowley,C., Currell,B., Deuel,B., Dowd,P., Eaton,D., Foster,J., Grimaldi,C., Gu,Q., Hass,P.E., Heldens,S., Huang,A., Kim,H.S., Klimowski,L., Jin,Y., Johnson,S., Lee,J., Lewis,L., Liao,D., Mark,M., Robbie,E., Sanchez,C., Schoenfeld,J., Seshagiri,S., Simmons,L., Singh,J., Smith,V., Stinson,J., Vagts,A., Vandlen,R., Watanabe,C., Wieand,D., Woods,K., Xie,M.H., Yansura,D., Yi,S., Yu,G., Yuan,J., Zhang,M., Zhang,Z., Goddard,A., Wood,W.I., Godowski,P. and Gray,A. TITLE The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment JOURNAL Genome Res. 13 (10), 2265-2270 (2003) PUBMED 12975309 REMARK Erratum:[Genome Res. 2003 Dec;13(12):2759] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK298112.1, AC015937.7 and AK309938.1. Summary: Members of the CD300 (see MIM 606786)-like (CD300L) family, such as CD300LG, are widely expressed on hematopoietic cells. All CD300L proteins are type I cell surface glycoproteins that contain a single immunoglobulin (Ig) V-like domain (Takatsu et al., 2006 [PubMed 16876123]).[supplied by OMIM, Mar 2008]. Transcript Variant: This variant (3) has multiple differences in the coding region, compared to variant 1, one of which results in a translational frameshift. The resulting protein (isoform 3) has a distinct C-terminus and is shorter than isoform 1. ##Evidence-Data-START## Transcript exon combination :: AK298112.1 [ECO:0000332] RNAseq introns :: single sample supports all introns ERS025081, ERS025083 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-648 AK298112.1 3-650 649-649 AC015937.7 7811-7811 c 650-1060 AK298112.1 652-1062 1061-1297 AK309938.1 1164-1400 FEATURES Location/Qualifiers source 1..1297 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="17" /map="17q21.31" gene 1..1297 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /note="CD300 molecule-like family member g" /db_xref="GeneID:146894" /db_xref="HGNC:30455" /db_xref="MIM:610520" exon 1..112 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /inference="alignment:Splign:1.39.8" misc_feature 16..18 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /note="upstream in-frame stop codon" variation 41 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:369652830" variation 63 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="g" /replace="t" /db_xref="dbSNP:372766024" CDS 70..891 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /note="isoform 3 precursor is encoded by transcript variant 3; CD300 antigen like family member G; CD300 molecule like family member g; CMRF35-like molecule 9; triggering receptor expressed on myeloid cells 4; CD300 antigen-like family member G" /codon_start=1 /product="CMRF35-like molecule 9 isoform 3 precursor" /protein_id="NP_001161795.1" /db_xref="GI:270132796" /db_xref="CCDS:CCDS54132.1" /db_xref="GeneID:146894" /db_xref="HGNC:30455" /db_xref="MIM:610520" /translation="
MRLLVLLWGCLLLPGYEALEGPEEISGFEGDTVSLQCTYREELRDHRKYWCRKGGILFSRCSGTIYAEEEGQETMKGRVSIRDSRQELSLIVTLWNLTLQDAGEYWCGVEKRGPDESLLISLFVFPASPGLYPAATTAKQGKTGAEAPPLPGTSQYGHERTSQYTGTSPHPATSPPAGSSRPPMQLDSTSAEDTSPALSSGSSKPRVSIPMVRILAPVLVLLSLLSAAGLIAFCSHLLLWRKEAQQATETQRNEKFCLSRLNSLMFSLSLPWL
" sig_peptide 70..123 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 133..396 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /note="Immunoglobulin V-set domain; Region: V-set; pfam07686" /db_xref="CDD:203725" misc_feature 139..408 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /note="Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR); Region: Ig_pIgR; cd05716" /db_xref="CDD:143193" misc_feature 205..213 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /note="CDR1-dIgA binding residues; other site" /db_xref="CDD:143193" variation 88 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:368854095" variation 102 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:200812399" exon 113..448 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /inference="alignment:Splign:1.39.8" variation 124 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="" /replace="c" /db_xref="dbSNP:35373935" variation 133 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:146351601" variation 147 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:373515876" variation 149 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="g" /db_xref="dbSNP:139674731" variation 169 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:144430828" variation 208 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:187296668" variation 209 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:115182680" variation 245 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="g" /db_xref="dbSNP:371238467" variation 248 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="g" /db_xref="dbSNP:373847576" variation 281 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:140028124" variation 304 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:367991783" variation 313 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:72836561" variation 314 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:145473485" variation 323 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:148841815" variation 328 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:201803597" variation 337 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:370617554" variation 372 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:374785527" variation 396 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:145115383" variation 414 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:367773909" variation 415 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:372637400" variation 430 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="g" /replace="t" /db_xref="dbSNP:200503531" variation 441 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:147596228" variation 448 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:202070685" exon 449..686 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /inference="alignment:Splign:1.39.8" variation 459 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="g" /replace="t" /db_xref="dbSNP:201969253" variation 468 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:140396225" variation 496 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="c" /db_xref="dbSNP:150185239" variation 511 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="c" /db_xref="dbSNP:138728662" variation 516 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:9911625" variation 537 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:149330626" variation 557 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:374685266" variation 570 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:201288918" variation 579 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="g" /db_xref="dbSNP:146326351" variation 600 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:201495676" variation 624 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:138369136" variation 628 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:17852267" variation 643 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:368997901" variation 649 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:12453522" variation 674 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="g" /db_xref="dbSNP:370495086" exon 687..799 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /inference="alignment:Splign:1.39.8" variation 697 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="c" /db_xref="dbSNP:146125903" variation 698 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:373605771" variation 707 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:376813399" variation 733 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:71383001" variation 734 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:148790025" variation 751 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:184299869" variation 762 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:367591100" variation 783 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="g" /db_xref="dbSNP:142466794" exon 800..852 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /inference="alignment:Splign:1.39.8" variation 828 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="g" /db_xref="dbSNP:142790995" variation 829 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:139013710" variation 846 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:145078684" variation 847 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:368815612" exon 853..1297 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /inference="alignment:Splign:1.39.8" variation 950 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:61043089" variation 966 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:116794877" variation 971 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:180930587" variation 1001 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:140257747" variation 1086 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:73985466" variation 1179 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="a" /replace="g" /db_xref="dbSNP:150377704" variation 1196 /gene="CD300LG" /gene_synonym="CLM-9; CLM9; NEPMUCIN; TREM-4; TREM4" /replace="c" /replace="t" /db_xref="dbSNP:186024985" ORIGIN
aaagacccgtgtgactgaagaggagctcacagttcccagcgtctgctcccacggtgtccagcgcccagaatgcggcttctggtcctgctatggggttgcctgctgctcccaggttatgaagccctggagggcccagaggaaatcagcgggttcgaaggggacactgtgtccctgcagtgcacctacagggaagagctgagggaccaccggaagtactggtgcaggaagggtgggatcctcttctctcgctgctctggcaccatctatgcagaagaagaaggccaggagacaatgaagggcagggtgtccatccgtgacagccgccaggagctctcgctcattgtgaccctgtggaacctcaccctgcaagacgctggggagtactggtgtggggtcgaaaaacggggccccgatgagtctttactgatctctctgttcgtctttccagcttctcctgggctctacccggcagccaccacagccaagcaggggaagacaggggctgaggcccctccattgccagggacttcccagtacgggcacgaaaggacttctcagtacacaggaacctctcctcacccagcgacctctcctcctgcagggagctcccgcccccccatgcagctggactccacctcagcagaggacaccagtccagctctcagcagtggcagctctaagcccagggtgtccatcccgatggtccgcatactggccccagtcctggtgctgctgagccttctgtcagccgcaggcctgatcgccttctgcagccacctgctcctgtggagaaaggaagctcaacaggccacggagacacagaggaacgagaagttctgcctctcacgcttgaactccctgatgttttctctgagcctgccttggctctgagaccaaggtggtgtggctgctctgggacccaggctgagggtggtgctctggggaccaggggcaagagaataagggtccctgtgcccattgtctggagctgggaacctgccccaaggctactgctgcaagaagagactgtgccctccgaggccagcactccaacggagggggctgcagcatcgcacttcaggcaacagaagcccctcctggcccctcctccctctgctgtttactgagatgcctccactccattcctttaaacacaagggcaggaaagcggagctaccattgccttctttcctggcgccagtgaggacaaaagactcaggcctggtcaccccaaggagggtctggggtggaaatgggactttgggctgtggcttaggaagcagctgttgttgtctca
//
ANNOTATIONS from NCBI Entrez Gene (20130726): GeneID:146894 -> Cellular component: GO:0016021 [integral to membrane] evidence: IEA GeneID:146894 -> Cellular component: GO:0016323 [basolateral plasma membrane] evidence: IEA GeneID:146894 -> Cellular component: GO:0016324 [apical plasma membrane] evidence: IEA GeneID:146894 -> Cellular component: GO:0032585 [multivesicular body membrane] evidence: IEA
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