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2024-04-27 11:01:07, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001146688 4638 bp mRNA linear PRI 18-APR-2013
DEFINITION Homo sapiens lysine (K)-specific demethylase 3A (KDM3A), transcript
variant 2, mRNA.
ACCESSION NM_001146688
VERSION NM_001146688.1 GI:226442778
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4638)
AUTHORS Cho,H.S., Toyokawa,G., Daigo,Y., Hayami,S., Masuda,K., Ikawa,N.,
Yamane,Y., Maejima,K., Tsunoda,T., Field,H.I., Kelly,J.D.,
Neal,D.E., Ponder,B.A., Maehara,Y., Nakamura,Y. and Hamamoto,R.
TITLE The JmjC domain-containing histone demethylase KDM3A is a positive
regulator of the G1/S transition in cancer cells via
transcriptional regulation of the HOXA1 gene
JOURNAL Int. J. Cancer 131 (3), E179-E189 (2012)
PUBMED 22020899
REMARK GeneRIF: study demonstrates KDM3A is overexpressed in various types
of cancer and directly activates transcription of HOXA1 through
demethylation of histone H3K9 by binding to its promoter region
REFERENCE 2 (bases 1 to 4638)
AUTHORS Mimura,I., Nangaku,M., Kanki,Y., Tsutsumi,S., Inoue,T., Kohro,T.,
Yamamoto,S., Fujita,T., Shimamura,T., Suehiro,J., Taguchi,A.,
Kobayashi,M., Tanimura,K., Inagaki,T., Tanaka,T., Hamakubo,T.,
Sakai,J., Aburatani,H., Kodama,T. and Wada,Y.
TITLE Dynamic change of chromatin conformation in response to hypoxia
enhances the expression of GLUT3 (SLC2A3) by cooperative
interaction of hypoxia-inducible factor 1 and KDM3A
JOURNAL Mol. Cell. Biol. 32 (15), 3018-3032 (2012)
PUBMED 22645302
REMARK GeneRIF: KDM3A is recruited to the SLC2A3 locus in an
HIF1-dependent manner and demethylates H3K9me2 so as to upregulate
its expression.
REFERENCE 3 (bases 1 to 4638)
AUTHORS Yamada,D., Kobayashi,S., Yamamoto,H., Tomimaru,Y., Noda,T.,
Uemura,M., Wada,H., Marubashi,S., Eguchi,H., Tanemura,M., Doki,Y.,
Mori,M. and Nagano,H.
TITLE Role of the hypoxia-related gene, JMJD1A, in hepatocellular
carcinoma: clinical impact on recurrence after hepatic resection
JOURNAL Ann. Surg. Oncol. 19 (SUPPL 3), S355-S364 (2012)
PUBMED 21607773
REMARK GeneRIF: our results suggest that JMJD1A is a sensitive recurrence
marker, and JMJD1A can promote malignant transformation via
epithelial-mesenchymal transition.
REFERENCE 4 (bases 1 to 4638)
AUTHORS Guo,X., Lu,J., Wang,Y., Gui,Y., Duan,X. and Cai,Z.
TITLE Ascorbate antagonizes nickel ion to regulate JMJD1A expression in
kidney cancer cells
JOURNAL Acta Biochim. Biophys. Sin. (Shanghai) 44 (4), 330-338 (2012)
PUBMED 22318714
REMARK GeneRIF: Findings suggest that both Ni(2+) and ascorbate can
regulate the expression of histone demethylase JMJD1A, which is
important for cancer development or inhibition.
REFERENCE 5 (bases 1 to 4638)
AUTHORS Du,Z.M., Hu,L.F., Wang,H.Y., Yan,L.X., Zeng,Y.X., Shao,J.Y. and
Ernberg,I.
TITLE Upregulation of MiR-155 in nasopharyngeal carcinoma is partly
driven by LMP1 and LMP2A and downregulates a negative prognostic
marker JMJD1A
JOURNAL PLoS ONE 6 (4), E19137 (2011)
PUBMED 21541331
REMARK GeneRIF: Up-regulation of miR-155 in nasopharyngeal carcinoma is
partly driven by LMP1 and LMP2A, and results in downregulation of
JMJD1A.
Publication Status: Online-Only
REFERENCE 6 (bases 1 to 4638)
AUTHORS Sar,A., Ponjevic,D., Nguyen,M., Box,A.H. and Demetrick,D.J.
TITLE Identification and characterization of demethylase JMJD1A as a gene
upregulated in the human cellular response to hypoxia
JOURNAL Cell Tissue Res. 337 (2), 223-234 (2009)
PUBMED 19471969
REMARK GeneRIF: Immunohistochemical staining has revealed that JMJD1A is
widely expressed in tissues, even in cells that are not known to
express the androgen receptor, and is significantly increased in
smooth muscle cells upon hypoxia treatment.
REFERENCE 7 (bases 1 to 4638)
AUTHORS Beyer,S., Kristensen,M.M., Jensen,K.S., Johansen,J.V. and
Staller,P.
TITLE The histone demethylases JMJD1A and JMJD2B are transcriptional
targets of hypoxia-inducible factor HIF
JOURNAL J. Biol. Chem. 283 (52), 36542-36552 (2008)
PUBMED 18984585
REMARK GeneRIF: histone demethylases JMJD1A and JMJD2B are transcriptional
targets of hypoxia-inducible factor HIF
REFERENCE 8 (bases 1 to 4638)
AUTHORS Pollard,P.J., Loenarz,C., Mole,D.R., McDonough,M.A., Gleadle,J.M.,
Schofield,C.J. and Ratcliffe,P.J.
TITLE Regulation of Jumonji-domain-containing histone demethylases by
hypoxia-inducible factor (HIF)-1alpha
JOURNAL Biochem. J. 416 (3), 387-394 (2008)
PUBMED 18713068
REMARK GeneRIF: Results show that many genes regulated by hypoxia and
HIF-1alpha show patterns of induction with JMJD (Jumonji-domain
containing)1A and JMJD2B demonstrating robust, and JMJD2C more
modest, up-regulation by hypoxia.
REFERENCE 9 (bases 1 to 4638)
AUTHORS Wellmann,S., Bettkober,M., Zelmer,A., Seeger,K., Faigle,M.,
Eltzschig,H.K. and Buhrer,C.
TITLE Hypoxia upregulates the histone demethylase JMJD1A via HIF-1
JOURNAL Biochem. Biophys. Res. Commun. 372 (4), 892-897 (2008)
PUBMED 18538129
REMARK GeneRIF: These findings demonstrate that JMJD1A can be stimulated
by hypoxia both in vitro and in vivo involving binding of HIF-1 to
a specific HRE in the JMJD1A promoter.
REFERENCE 10 (bases 1 to 4638)
AUTHORS Yamane,K., Toumazou,C., Tsukada,Y., Erdjument-Bromage,H.,
Tempst,P., Wong,J. and Zhang,Y.
TITLE JHDM2A, a JmjC-containing H3K9 demethylase, facilitates
transcription activation by androgen receptor
JOURNAL Cell 125 (3), 483-495 (2006)
PUBMED 16603237
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from BX648841.1, BX647271.1 and
AB018285.2.
Summary: This gene encodes a zinc finger protein that contains a
jumonji domain and may play a role in hormone-dependent
transcriptional activation. Alternative splicing results in
multiple transcript variants. [provided by RefSeq, Apr 2009].
Transcript Variant: This variant (2) differs in the 5' UTR compared
to variant 1. Both variants 1 and 2 encode the same protein.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: BX648841.1 [ECO:0000332]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-691 BX648841.1 2-692
692-2374 BX647271.1 730-2412
2375-4620 AB018285.2 2407-4652
4621-4638 BX648841.1 4622-4639
FEATURES Location/Qualifiers
source 1..4638
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="2"
/map="2p11.2"
gene 1..4638
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/note="lysine (K)-specific demethylase 3A"
/db_xref="GeneID:55818"
/db_xref="HGNC:20815"
/db_xref="MIM:611512"
exon 1..28
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
exon 29..244
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 42
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:367622060"
variation 44
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:371719009"
CDS 59..4024
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/note="testis-specific protein A; jumonji C
domain-containing histone demethylase 2A; jumonji domain
containing 1A; jumonji domain-containing protein 1A; jmjC
domain-containing histone demethylation protein 2A"
/codon_start=1
/product="lysine-specific demethylase 3A"
/protein_id="NP_001140160.1"
/db_xref="GI:226442779"
/db_xref="CCDS:CCDS1990.1"
/db_xref="GeneID:55818"
/db_xref="HGNC:20815"
/db_xref="MIM:611512"
/translation="
MVLTLGESWPVLVGRRFLSLSAADGSDGSHDSWDVERVAEWPWLSGTIRAVSHTDVTKKDLKVCVEFDGESWRKRRWIEVYSLLRRAFLVEHNLVLAERKSPEISERIVQWPAITYKPLLDKAGLGSITSVRFLGDQQRVFLSKDLLKPIQDVNSLRLSLTDNQIVSKEFQALIVKHLDESHLLKGDKNLVGSEVKIYSLDPSTQWFSATVINGNPASKTLQVNCEEIPALKIVDPSLIHVEVVHDNLVTCGNSARIGAVKRKSSENNGTLVSKQAKSCSEASPSMCPVQSVPTTVFKEILLGCTAATPPSKDPRQQSTPQAANSPPNLGAKIPQGCHKQSLPEEISSCLNTKSEALRTKPDVCKAGLLSKSSQIGTGDLKILTEPKGSCTQPKTNTDQENRLESVPQALTGLPKECLPTKASSKAELEIANPPELQKHLEHAPSPSDVSNAPEVKAGVNSDSPNNCSGKKVEPSALACRSQNLKESSVKVDNESCCSRSNNKIQNAPSRKSVLTDPAKLKKLQQSGEAFVQDDSCVNIVAQLPKCRECRLDSLRKDKEQQKDSPVFCRFFHFRRLQFNKHGVLRVEGFLTPNKYDNEAIGLWLPLTKNVVGIDLDTAKYILANIGDHFCQMVISEKEAMSTIEPHRQVAWKRAVKGVREMCDVCDTTIFNLHWVCPRCGFGVCVDCYRMKRKNCQQGAAYKTFSWLKCVKSQIHEPENLMPTQIIPGKALYDVGDIVHSVRAKWGIKANCPCSNRQFKLFSKPASKEDLKQTSLAGEKPTLGAVLQQNPSVLEPAAVGGEAASKPAGSMKPACPASTSPLNWLADLTSGNVNKENKEKQPTMPILKNEIKCLPPLPPLSKSSTVLHTFNSTILTPVSNNNSGFLRNLLNSSTGKTENGLKNTPKILDDIFASLVQNKTTSDLSKRPQGLTIKPSILGFDTPHYWLCDNRLLCLQDPNNKSNWNVFRECWKQGQPVMVSGVHHKLNSELWKPESFRKEFGEQEVDLVNCRTNEIITGATVGDFWDGFEDVPNRLKNEKEPMVLKLKDWPPGEDFRDMMPSRFDDLMANIPLPEYTRRDGKLNLASRLPNYFVRPDLGPKMYNAYGLITPEDRKYGTTNLHLDVSDAANVMVYVGIPKGQCEQEEEVLKTIQDGDSDELTIKRFIEGKEKPGALWHIYAAKDTEKIREFLKKVSEEQGQENPADHDPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAVAMLKASESSFGKP
"
misc_feature 848..850
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/experiment="experimental evidence, no additional details
recorded"
/note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
(Q9Y4C1.4); phosphorylation site"
misc_feature 1391..1393
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/experiment="experimental evidence, no additional details
recorded"
/note="Phosphoserine; propagated from UniProtKB/Swiss-Prot
(Q9Y4C1.4); phosphorylation site"
misc_feature 2711..2725
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/experiment="experimental evidence, no additional details
recorded"
/note="propagated from UniProtKB/Swiss-Prot (Q9Y4C1.4);
Region: LXXLL motif"
misc_feature 2741..2743
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/experiment="experimental evidence, no additional details
recorded"
/note="N6-acetyllysine; propagated from
UniProtKB/Swiss-Prot (Q9Y4C1.4); acetylation site"
misc_feature 3248..3460
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/note="A domain family that is part of the cupin
metalloenzyme superfamily; Region: JmjC; smart00558"
/db_xref="CDD:197789"
misc_feature 3509..3850
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/note="JmjC domain, hydroxylase; Region: JmjC; pfam02373"
/db_xref="CDD:202224"
variation 82
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:146747408"
variation 127
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:376742455"
variation 175
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:202106084"
variation 182
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:140350293"
variation 195
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369307421"
variation 196
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201831015"
variation 224
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:373486115"
exon 245..400
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 247
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:61750270"
variation 313
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369893289"
variation 333
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201066011"
variation 345
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200567558"
variation 367
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:201724307"
variation 377
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:150111816"
variation 378
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:370041213"
exon 401..511
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 408
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:147119313"
variation 410
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:149635248"
variation 496
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:201247647"
exon 512..614
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 528
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:371044560"
variation 540
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:144363423"
variation 568
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:149847163"
exon 615..739
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 616
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:201676265"
variation 619
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:199889240"
variation 638
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:13424350"
variation 658
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:371468714"
variation 692
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:2030259"
variation 696
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:149956438"
variation 721
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:145028659"
variation 729
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:142114358"
exon 740..812
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 744
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:141140085"
variation 799
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:147562032"
variation 808
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:138895230"
exon 813..901
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 847
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:112037053"
exon 902..1065
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 932
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:142836097"
variation 941
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:146075276"
variation 976
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:12714187"
variation 985
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:34507616"
variation 990
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369252210"
variation 1032
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200618359"
variation 1058
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:141469380"
exon 1066..1577
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 1067
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:369600731"
variation 1084
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:144371910"
variation 1106
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200135960"
variation 1115
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:372801997"
variation 1127
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:190266151"
variation 1129
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:370857741"
variation 1143
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:147819585"
variation 1154
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:375678230"
variation 1224
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:147565471"
variation 1282
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:377687083"
variation 1308
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:143405154"
variation 1309
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:151317388"
variation 1322
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:371235991"
variation 1340
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:375633577"
variation 1353
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:202001552"
variation 1356
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:145828031"
variation 1376
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:201238111"
variation 1397
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:34605051"
variation 1431
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:200322891"
variation 1435
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:367637779"
variation 1444
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:371865986"
variation 1467
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:149342312"
variation 1482
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:201713531"
variation 1505
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:376984244"
variation 1524
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:370074952"
variation 1545
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:148699286"
variation 1563
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:114134559"
exon 1578..1782
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 1611
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:368056764"
variation 1617
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:186664065"
variation 1618
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:189936092"
variation 1625
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:145137870"
variation 1645
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:371780877"
variation 1651
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:377529059"
variation 1658
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369654648"
variation 1667
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:149675674"
variation 1715
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:372242978"
variation 1716
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:145449611"
variation 1721
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200245801"
variation 1756
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:182665349"
exon 1783..1997
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 1810
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:376795532"
variation 1816
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:368909599"
variation 1848
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:145066068"
variation 1857
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:148315398"
variation 1898
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:199499006"
variation 1932
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200823669"
variation 1943
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:373103393"
variation 1952..1953
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace=""
/replace="a"
/db_xref="dbSNP:35743643"
variation 1975
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:143719053"
exon 1998..2150
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2002
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:150409704"
variation 2098
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:142904861"
exon 2151..2246
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2177
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:199927808"
variation 2187
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:11677451"
exon 2247..2374
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2286
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:138136575"
variation 2324
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:199709370"
variation 2329
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:148645702"
variation 2347
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:369494425"
variation 2361
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:142113352"
exon 2375..2570
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2398
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:61748134"
variation 2409
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:199893416"
variation 2428
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200548258"
variation 2448
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:200297487"
variation 2486
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:370225146"
variation 2492
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:373927646"
variation 2512
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201206984"
variation 2515
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:184960310"
variation 2517
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:368070515"
variation 2533
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:35269985"
variation 2534
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:145200665"
variation 2541
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:200464865"
variation 2548
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:143689515"
variation 2550
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:147014991"
exon 2571..2743
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2573
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:138225856"
variation 2585
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:150575235"
variation 2608
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:375164766"
variation 2659
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:144469383"
variation 2714
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:142313434"
variation 2733
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:145935155"
exon 2744..2980
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2758
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:372748418"
variation 2772
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:142454847"
variation 2814
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:78049080"
variation 2837
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:139335286"
variation 2867
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:34673273"
variation 2874
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:190315429"
variation 2896
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:36101015"
exon 2981..3152
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 2983
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201396988"
variation 2993
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:191697909"
variation 3049
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:72932308"
variation 3052
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:373584625"
variation 3076
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:199894923"
variation 3100
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:373357673"
exon 3153..3240
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3169
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:148246875"
variation 3230
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:376473342"
exon 3241..3371
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3261
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:150326959"
variation 3274
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:193250409"
exon 3372..3491
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3384
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:202218940"
variation 3393
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201485490"
variation 3397
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201006430"
variation 3448
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369390153"
variation 3449
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:113985244"
variation 3474
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:145953450"
variation 3476
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:201986485"
variation 3478
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:201046362"
variation 3484
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:370871158"
exon 3492..3631
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3522
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:149432098"
variation 3619
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:76610646"
exon 3632..3808
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3632
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:201909544"
variation 3636
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:17853822"
variation 3660
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/db_xref="dbSNP:142941230"
variation 3670
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:147714531"
variation 3697
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:369677697"
variation 3705
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:144713807"
variation 3759
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:140420657"
variation 3763
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:202133365"
exon 3809..3943
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3821
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:201570782"
variation 3841
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="g"
/replace="t"
/db_xref="dbSNP:61748136"
variation 3865
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:145484412"
variation 3869
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:376556978"
variation 3904
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:142497993"
variation 3905
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:61750310"
variation 3928
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:376277877"
variation 3941
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:367630615"
exon 3944..4621
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/inference="alignment:Splign:1.39.8"
variation 3999
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:111516806"
variation 4015
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:34633400"
variation 4024
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:79419435"
variation 4025
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:80197631"
variation 4036
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:369643667"
variation 4061
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="c"
/replace="t"
/db_xref="dbSNP:193258446"
variation 4115
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="t"
/db_xref="dbSNP:139722069"
variation 4286
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:147187367"
variation 4315
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="t"
/db_xref="dbSNP:183629545"
variation 4343
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace=""
/replace="g"
/db_xref="dbSNP:71739016"
variation 4352..4353
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace=""
/replace="caa"
/db_xref="dbSNP:113795219"
variation 4388
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="a"
/replace="g"
/db_xref="dbSNP:112355084"
polyA_signal 4602..4607
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
variation 4613
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace="c"
/replace="g"
/db_xref="dbSNP:149690355"
variation 4615..4616
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
/replace=""
/replace="ata"
/db_xref="dbSNP:374550598"
polyA_site 4621
/gene="KDM3A"
/gene_synonym="JHDM2A; JHMD2A; JMJD1; JMJD1A; TSGA"
ORIGIN
ctcggctgcggggagaggggagagaaagggaggagctcttcctgcaggcgtggaaaccatggtgctcacgctcggagaaagttggccggtattggtggggaggaggtttctcagtctgtccgcagccgacggcagcgatggcagccacgacagctgggacgtggagcgcgtcgccgagtggccctggctctccgggaccattcgagctgtttcccacaccgacgttaccaagaaggatctgaaggtgtgtgtggaatttgatggggaatcttggaggaaaagaagatggatagaagtctacagccttctaaggagagcatttttagtagaacataatttggttttagctgaacgaaagtcacctgaaatttctgaacgaattgtacagtggcctgcaataacgtacaaacctctgttggacaaagctggtttgggatccataacttctgttcgctttctgggagatcaacaaagagtatttctttctaaagaccttttgaagcctatacaggatgtaaacagtcttcgactttctcttacggataatcagattgtcagtaaagaatttcaagctttgattgtgaagcatttagatgaaagccatcttttaaaaggtgacaaaaacttagttggttcagaagtaaaaatttatagcttggacccatctactcagtggttttcagcaaccgttataaatggaaacccagcatcaaaaactcttcaagtcaactgtgaggagattccagcactgaaaattgttgatccgtcactgattcatgttgaagttgtacacgataaccttgtgacatgtggtaattctgcaagaattggagctgtaaaacgcaagtcttctgagaataatggaaccctggtttccaaacaagcaaaatcttgctctgaggcctctcccagtatgtgtcctgtgcagtctgtacctacaacagtttttaaggagatactgcttggctgtactgcggcaactccacctagtaaggacccaagacagcaaagtactccccaggctgccaactctccacctaaccttggagcaaaaattcctcaaggatgtcataaacaaagtttaccagaggaaatttcttcctgtctaaatacaaagtctgaagctctgagaacaaaaccagatgtctgcaaagcagggttgctctcaaagtcctctcagattggaactggagacttgaaaattctgactgagccaaaaggcagctgtactcagcctaagacaaacactgatcaggaaaacagattggagtctgttccacaagcattgactggccttcctaaggagtgcttacctacaaaggcttcttctaaggcagaattggaaattgccaatcctcctgaactgcagaagcacctagaacatgcaccttccccatcggatgtttcaaatgcaccagaagtgaaagcaggtgtcaatagtgatagccctaataactgttcaggaaaaaaggtagaaccttcagctttagcttgccgatcacagaatttaaaggaatcttcagtaaaagtagataatgaaagctgttgttcaagaagcaacaataaaatccagaatgccccatccaggaagtcggttttgacagacccagctaaactcaaaaagctgcaacagagtggcgaggccttcgtacaggatgattcttgtgtgaacatcgtggcacagttgcctaaatgccgagagtgtcgcttggacagtctccgcaaggataaggagcaacagaaggactcacctgtgttttgccgcttctttcacttcaggaggttacaattcaacaaacatggtgtgttgcgggtagaaggcttcttaacaccaaacaagtatgacaatgaagcaattggcttgtggttacctttaaccaaaaacgttgtggggattgatttggacacagcaaagtacatcttggccaacattggagaccacttctgtcaaatggtgatttctgaaaaggaagctatgtcaactattgagccacacagacaggttgcttggaagcgagctgtcaaaggtgttcgagaaatgtgtgatgtgtgcgacaccaccatcttcaacctgcactgggtgtgtcctcggtgtgggtttggagtatgtgtggactgctaccggatgaagagaaagaattgccaacagggtgctgcttacaagactttctcttggctaaaatgtgtgaagagtcagatacatgaaccagagaacttaatgcccacacagatcattcctggaaaagcactctatgatgttggagacattgttcattctgtaagagcgaaatggggaataaaggcaaactgcccttgttcaaacaggcaattcaaactcttttcaaagccagcctcaaaggaagacctaaaacagacttctttagctggagaaaaaccgactcttggtgcagtgctccagcagaatccctcagtgttggagccagcagctgtgggtggggaagcagcctccaagccagccggcagcatgaagcctgcctgtccagccagcacatctcctctaaactggctggccgacctaaccagcgggaatgtcaacaaggaaaacaaggaaaaacaaccaacaatgccaattttaaagaatgaaatcaaatgccttccacccctcccacctttaagcaaatccagcacagtcctccatacgtttaacagcacaattttgacacccgtaagcaacaacaattctggtttcctccggaatctcttgaattcttctacaggaaagacagaaaatggactcaagaatacaccaaaaatccttgatgacatctttgcctctttggtgcaaaataagacgacttctgatttatctaagaggcctcaaggactaaccatcaagcccagcattctgggctttgacactcctcactattggctttgtgataatcgcttgctgtgcttgcaagaccccaacaataagagcaactggaatgtgtttagggagtgctggaaacaagggcagccagtgatggtgtctggagtgcatcataaattgaactctgaactttggaaacctgaatccttcaggaaagagtttggtgagcaggaagtagacctagttaattgtaggaccaatgaaatcatcacaggagccacagtaggagacttctgggatggatttgaagatgttccaaatcgtttgaaaaatgaaaaagaaccaatggtgttgaaacttaaggactggccaccaggagaagattttagagatatgatgccttccaggtttgatgatctgatggccaacattccactgcccgagtacacaaggcgagatggcaaactgaatttggcctctaggctgccaaactactttgttcggccagatctgggccccaagatgtataatgcttatggattaatcactcctgaagatcggaaatatggaacaacaaatcttcacttagatgtatctgatgcagctaatgtcatggtctatgtgggaattcccaaaggacagtgtgagcaagaagaagaagtccttaagaccatccaagatggagattctgacgaactcacaataaagcgatttattgaaggaaaagagaagccaggagcactgtggcacatatatgctgcaaaggacacggagaagataagggaatttcttaaaaaggtatcagaagagcaaggtcaagaaaacccagcagaccacgatcctattcatgatcaaagctggtatttagaccgatcattaagaaaacgtcttcatcaagagtatggagttcaaggctgggctattgtacagtttcttggggatgtggtgtttatcccggcaggagctccacatcaggttcataacttatatagctgcatcaaagtggctgaagattttgtttctccagagcatgttaaacactgcttctggcttactcaggaattccgatatctgtcacagactcataccaatcacgaagataaattacaggtgaagaatgttatctaccatgcagtgaaagatgcagttgctatgctgaaagccagtgaatccagttttggcaaaccttaatctccctgcacattggaaatgaattacaggcagctgttcaaactcttcaggcaggattcctgtggactttgagattcatgttacctcatcttcttttttaaactgtacccaacttgtgagggtactctgtctaatgtatatttctagtgtttacagacagtaaatgtgtatatgtagtaactatttacagaacatgcatccttaaactgtgacttctcacctagtgcagaacttttaccaggctgtaaaagcaaaacctcgtatcagctctggaacaatacctgcagttattcttcagctgtttggacaacttagattgggtttataactattaggaatcactgcacagtttatttgggttgtgttttgtgtctgagtcccctccctcatcccttagggtccagaagagcaatggaggaagtgacagctaatgttgcagttcttattgtatggcataggactggcattatatagcagaaatcaactactgtacaatttcttggggttaaccatctttagttaaatggaattttaatttaaatgacgctttgctaattttaagtgttaagcattttgcattaaaatattcatataataaaaaaaaaaaaaaaaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:55818 -> Molecular function: GO:0000976 [transcription regulatory region sequence-specific DNA binding] evidence: IEA
GeneID:55818 -> Molecular function: GO:0001047 [core promoter binding] evidence: IEA
GeneID:55818 -> Molecular function: GO:0003700 [sequence-specific DNA binding transcription factor activity] evidence: IEA
GeneID:55818 -> Molecular function: GO:0005506 [iron ion binding] evidence: IMP
GeneID:55818 -> Molecular function: GO:0016702 [oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen] evidence: IEA
GeneID:55818 -> Molecular function: GO:0050681 [androgen receptor binding] evidence: IDA
GeneID:55818 -> Biological process: GO:0006351 [transcription, DNA-dependent] evidence: IEA
GeneID:55818 -> Biological process: GO:0007290 [spermatid nucleus elongation] evidence: IEA
GeneID:55818 -> Biological process: GO:0009755 [hormone-mediated signaling pathway] evidence: IDA
GeneID:55818 -> Biological process: GO:0030521 [androgen receptor signaling pathway] evidence: IDA
GeneID:55818 -> Biological process: GO:0033169 [histone H3-K9 demethylation] evidence: IDA
GeneID:55818 -> Biological process: GO:0036123 [histone H3-K9 dimethylation] evidence: IEA
GeneID:55818 -> Biological process: GO:0045893 [positive regulation of transcription, DNA-dependent] evidence: IMP
GeneID:55818 -> Biological process: GO:0045944 [positive regulation of transcription from RNA polymerase II promoter] evidence: IEA
GeneID:55818 -> Biological process: GO:0046293 [formaldehyde biosynthetic process] evidence: IDA
GeneID:55818 -> Biological process: GO:0051573 [negative regulation of histone H3-K9 methylation] evidence: IEA
GeneID:55818 -> Cellular component: GO:0005634 [nucleus] evidence: IDA
GeneID:55818 -> Cellular component: GO:0005737 [cytoplasm] evidence: IEA
by
@meso_cacase at
DBCLS
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