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2024-04-25 15:26:26, GGRNA : RefSeq release 60 (20130726)
LOCUS NM_001145434 2285 bp mRNA linear PRI 17-APR-2013
DEFINITION Homo sapiens zinc finger protein 880 (ZNF880), mRNA.
ACCESSION NM_001145434 XR_039381 XR_039390 XR_039621
VERSION NM_001145434.1 GI:224177532
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2285)
AUTHORS Jia,L., Young,M.F., Powell,J., Yang,L., Ho,N.C., Hotchkiss,R.,
Robey,P.G. and Francomano,C.A.
TITLE Gene expression profile of human bone marrow stromal cells:
high-throughput expressed sequence tag sequencing analysis
JOURNAL Genomics 79 (1), 7-17 (2002)
PUBMED 11827452
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
DC419753.1, AK297834.1, AF086165.1 and AI754748.1.
On or before Feb 28, 2009 this sequence version replaced
gi:169214039, gi:169213413, gi:169214453.
##Evidence-Data-START##
Transcript exon combination :: AK297834.1, BU930278.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
ERS025081, ERS025082 [ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-34 DC419753.1 1-34
35-1861 AK297834.1 1-1827
1862-2146 AF086165.1 134-418
2147-2285 AI754748.1 1-139 c
FEATURES Location/Qualifiers
source 1..2285
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="19"
/map="19q13.41"
gene 1..2285
/gene="ZNF880"
/note="zinc finger protein 880"
/db_xref="GeneID:400713"
/db_xref="HGNC:37249"
exon 1..61
/gene="ZNF880"
/inference="alignment:Splign:1.39.8"
variation 22
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:143869886"
variation 33
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:374952867"
variation 45
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:369052443"
variation 49
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:140336647"
CDS 50..1783
/gene="ZNF880"
/note="zinc finger protein LOC400713"
/codon_start=1
/product="zinc finger protein 880"
/protein_id="NP_001138906.1"
/db_xref="GI:224177533"
/db_xref="CCDS:CCDS46164.1"
/db_xref="GeneID:400713"
/db_xref="HGNC:37249"
/translation="
MLRRGHLAFRDVAIEFPQEEWKCLDPAQRTLYREVMVENYRNLVFLGICLPDLSVISMLEQRRDPRNLQSEVKIANNPGGRECIKGVNAESSSKLGSNAGNKSLKNQLGLTFQLHLSELQLFQAERNISGCKHVEKPINNSLVSPLQKIYSSVKSHILNKYRNDFDDSPFLPQEQKAQIREKPCECNEHGKAFRVSSRLANNQVIHTADNPYKCNECDKVFSNSSNLVQHQRIHTGEKPYKCHECGKLFNRISLLARHQRIHTGEKPYKCHECGKVFTQNSHLANHHRIHTGEKPYKCNECGKVFNRNAHLARHQKIHSGEKPYKCKECGKAFSGGSGLTAHLVIHTGEKLYKCNKCGKVFNRNAHLTRHQRIHTGEKPYECKECGKVFRHKFCLTNHHRMHTGEQPYKCNECGKAFRDCSGLTAHLLIHTGEKPYKCKECAKVFRHRLSLSNHQRFHTGEKPYRCDECGKDFTRNSNLANHHRIHTGEKPYKCSECHKVFSHNSHLARHRQIHTGEKSYKCNECGKVFSHKLYLKKHERIHTGEKPYRCHECGKDFTRNSNLANHHRIHTGEKPYR
"
misc_feature 68..244
/gene="ZNF880"
/note="krueppel associated box; Region: KRAB; smart00349"
/db_xref="CDD:197671"
misc_feature 68..187
/gene="ZNF880"
/note="KRAB (Kruppel-associated box) domain -A box;
Region: KRAB_A-box; cd07765"
/db_xref="CDD:143639"
misc_feature 548..1753
/gene="ZNF880"
/note="FOG: Zn-finger [General function prediction only];
Region: COG5048"
/db_xref="CDD:34653"
misc_feature 725..802
/gene="ZNF880"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:205643"
misc_feature 812..886
/gene="ZNF880"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:205643"
misc_feature 893..970
/gene="ZNF880"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:205643"
misc_feature 977..1051
/gene="ZNF880"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:205643"
misc_feature 1106..1171
/gene="ZNF880"
/note="Zinc finger, C2H2 type; Region: zf-C2H2; cl15478"
/db_xref="CDD:210117"
misc_feature 1145..1222
/gene="ZNF880"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:205643"
misc_feature 1232..1300
/gene="ZNF880"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:205643"
misc_feature 1397..1474
/gene="ZNF880"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:205643"
misc_feature 1481..1558
/gene="ZNF880"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:205643"
misc_feature 1565..1642
/gene="ZNF880"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:205643"
misc_feature 1649..1726
/gene="ZNF880"
/note="Zinc-finger double domain; Region: zf-H2C2_2;
pfam13465"
/db_xref="CDD:205643"
exon 62..188
/gene="ZNF880"
/inference="alignment:Splign:1.39.8"
variation 73
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:374062914"
variation 82
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:7256752"
variation 83
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:14048"
variation 92
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:375671601"
variation 98
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:7256760"
variation 102
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:369606256"
variation 143
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:201475417"
variation 145
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:372343871"
variation 162
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:73934441"
variation 181
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:11396"
exon 189..317
/gene="ZNF880"
/inference="alignment:Splign:1.39.8"
variation 220
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:199978957"
variation 236
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:372723926"
variation 251
/gene="ZNF880"
/replace="c"
/replace="g"
/db_xref="dbSNP:377551335"
variation 313
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:375204197"
variation 314
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:79588580"
exon 318..2264
/gene="ZNF880"
/inference="alignment:Splign:1.39.8"
variation 346
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:138397253"
variation 347
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:115277571"
variation 362
/gene="ZNF880"
/replace=""
/replace="a"
/db_xref="dbSNP:34470614"
variation 407
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:370330395"
variation 462..466
/gene="ZNF880"
/replace=""
/replace="caa"
/db_xref="dbSNP:34678014"
variation 463..464
/gene="ZNF880"
/replace=""
/replace="caa"
/db_xref="dbSNP:71836013"
variation 498
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:324125"
variation 510
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:56370398"
variation 514
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:60702513"
variation 554
/gene="ZNF880"
/replace="c"
/replace="g"
/db_xref="dbSNP:370680033"
variation 598
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:74256648"
variation 606
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:114874361"
variation 610
/gene="ZNF880"
/replace="g"
/replace="t"
/db_xref="dbSNP:371078972"
variation 617
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:374700549"
variation 643
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:8104808"
variation 653
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:8104812"
variation 680
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:374769015"
variation 701
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:201416528"
variation 800
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:201241467"
variation 817..819
/gene="ZNF880"
/replace=""
/replace="acg"
/db_xref="dbSNP:148392772"
variation 819
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:78052167"
variation 842
/gene="ZNF880"
/replace="c"
/replace="g"
/db_xref="dbSNP:371701046"
variation 865
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:191209878"
variation 867
/gene="ZNF880"
/replace="c"
/replace="g"
/db_xref="dbSNP:199840726"
variation 942
/gene="ZNF880"
/replace="c"
/replace="g"
/db_xref="dbSNP:142974612"
variation 981
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:183216835"
variation 987
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:200583515"
variation 1030
/gene="ZNF880"
/replace="g"
/replace="t"
/db_xref="dbSNP:201995005"
variation 1101
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:200144736"
variation 1113
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:201096971"
variation 1115
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:77734828"
variation 1116
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:373613901"
variation 1117
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:202025044"
variation 1120
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:2042913"
variation 1126
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:78555351"
variation 1134
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:200089722"
variation 1141
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:376008555"
variation 1148
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:370101970"
variation 1162
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:79401361"
variation 1166
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:200887529"
variation 1168
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:77886189"
variation 1182
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:201873676"
variation 1185
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:374316173"
variation 1189
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:78729874"
variation 1213
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:77312997"
variation 1226..1227
/gene="ZNF880"
/replace=""
/replace="t"
/db_xref="dbSNP:36133100"
variation 1239
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:377421505"
variation 1245
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:187542042"
variation 1246
/gene="ZNF880"
/replace="a"
/replace="t"
/db_xref="dbSNP:80047366"
variation 1250
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:77864636"
variation 1252
/gene="ZNF880"
/replace="g"
/replace="t"
/db_xref="dbSNP:79685438"
variation 1257
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:373891575"
variation 1258
/gene="ZNF880"
/replace="g"
/replace="t"
/db_xref="dbSNP:75507701"
variation 1264
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:324124"
variation 1265
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:75346003"
variation 1266
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:76053634"
variation 1287
/gene="ZNF880"
/replace="g"
/replace="t"
/db_xref="dbSNP:12975097"
variation 1426
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:56151179"
variation 1461
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:55748277"
variation 1472
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:375150120"
variation 1531
/gene="ZNF880"
/replace="c"
/replace="g"
/db_xref="dbSNP:368213080"
variation 1556
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:371557702"
variation 1623
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:374483230"
variation 1702
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:375348796"
variation 1725
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:184977847"
variation 1765
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:188096553"
variation 1774
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:146141677"
variation 1806
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:368424455"
variation 1836
/gene="ZNF880"
/replace="g"
/replace="t"
/db_xref="dbSNP:3170100"
variation 1837
/gene="ZNF880"
/replace="a"
/replace="c"
/db_xref="dbSNP:148798804"
variation 1861
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:377282146"
variation 2032..2033
/gene="ZNF880"
/replace=""
/replace="atcccaaag"
/db_xref="dbSNP:371978669"
variation 2057
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:56955135"
variation 2089
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:115603968"
variation 2194
/gene="ZNF880"
/replace="c"
/replace="t"
/db_xref="dbSNP:141602552"
variation 2229
/gene="ZNF880"
/replace="a"
/replace="g"
/db_xref="dbSNP:369722694"
ORIGIN
gcgcgcagtttcctggagacccggaagcagattacgtggagtgacggtcatgctgcggcgtggacacttggcattcagggacgtggccatagaattccctcaggaggagtggaaatgtctggaccctgctcagaggactttatacagggaagtgatggtggagaactacaggaacctggtctttctgggaatctgtcttcctgacctgagtgttatctccatgttggagcaaaggagagatccccggaatctgcagagtgaagtgaaaatagcaaacaatccaggtggcagggagtgcatcaaaggtgtgaacgcagagagcagctctaaattgggaagcaatgccggaaacaagtctcttaaaaatcaacttggattaacctttcagttacatctgagtgaactgcagctatttcaagctgaaaggaatatttctggatgtaaacatgtcgaaaaacctatcaacaattccttagtttcaccacttcaaaaaatttattctagtgtcaaatcccacattttaaataaatacagaaatgattttgatgattctccatttctcccacaagaacaaaaagcacaaataagggaaaaaccgtgtgaatgtaatgagcatggcaaagcctttagagtgtcttcaagacttgctaacaatcaagtaatccacactgcagataacccttacaaatgtaatgaatgtgacaaggtcttcagtaacagttcaaaccttgtacaacatcaaagaattcatactggagagaagccttacaagtgtcatgaatgtggcaagctcttcaatcgaatttcactccttgcacgacatcagagaatacatactggagagaaaccttacaaatgtcatgagtgtggcaaagtcttcactcaaaattctcaccttgcaaatcatcacagaatccacactggagagaaaccttacaaatgtaatgagtgtggcaaggtcttcaacagaaatgcacaccttgcacgacatcagaaaattcatagtggagagaaaccttacaaatgtaaggaatgtggcaaagcattttcagggggttcaggccttactgctcatcttgtaattcacactggagagaaactttacaaatgtaataaatgtggcaaggtcttcaatcgaaatgcacaccttaccagacatcaaagaatccatactggagagaaaccttatgaatgtaaagaatgtggcaaggtcttcaggcacaagttttgtctaaccaatcatcatagaatgcacacgggagagcaaccttacaaatgtaatgaatgtggcaaagcatttagagactgttcaggccttactgcccatctactaattcacactggagagaaaccttacaaatgtaaagaatgtgccaaggtcttcaggcatagattatccctaagcaatcatcagagatttcatactggagagaaaccttacagatgtgatgaatgtggcaaggacttcactcgaaattcaaaccttgcaaatcatcacagaatccatactggagagaaaccttacaaatgcagtgaatgtcacaaagtctttagtcacaattcacaccttgcacgacataggcaaattcatactggagagaagtcttacaaatgcaatgaatgtggcaaggtcttcagccacaagttatacctaaaaaaacatgagagaattcatactggggagaaaccgtacagatgtcatgaatgtggtaaggacttcactcgaaattcaaacctggcaaatcatcacagaatccatactggagagaaaccgtacagatgaaatgtgtgtggtaagatctttagtaataattcacaccttgcacagcatgagataattcattcatgagagagttcttacaaactgagtatggcaaactcttcatgctaagttctagcattaatcaacatcagagattccatactaaagagaaatcatagcaatgtatgtgaatcaggtctcttgaggcctgccaaatgactagatatcaaaacatacatcttggatgaaaccatacagatggattatgtatgctgaggctattattcaaggaccattactatggaacatgataagatttacacaagcgataattcagtctctagttctccaatatttatgatactgcatgctgcagaaaagtcacagctccaaatacgttgaatctcatgacgcgatgcatgtcgaaggtccaagggcatgtggaaatggtcagttatattcaggcaattaaaaaacctaattatatggggttttttgaaaaaaaaaaaaaaaaaaaaaaaaa
//
ANNOTATIONS from NCBI Entrez Gene (20130726):
GeneID:400713 -> Molecular function: GO:0003676 [nucleic acid binding] evidence: IEA
GeneID:400713 -> Molecular function: GO:0046872 [metal ion binding] evidence: IEA
GeneID:400713 -> Biological process: GO:0006355 [regulation of transcription, DNA-dependent] evidence: IEA
GeneID:400713 -> Cellular component: GO:0005622 [intracellular] evidence: IEA
by
@meso_cacase at
DBCLS
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